Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,492,268 | C→A | 8.6% | intergenic (+29/+66) | cysNC → / ← imm | sulfate adenylyltransferase subunit 1/adenylyl‑sulfate kinase/colicin‑E7 immunity protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,492,268 | 0 | C | A | 8.6% | 165.1 / 4.0 | 54 | intergenic (+29/+66) | cysNC/imm | sulfate adenylyltransferase subunit 1/adenylyl‑sulfate kinase/colicin‑E7 immunity protein |
Reads supporting (aligned to +/- strand): ref base C (24/25); new base A (3/2); total (27/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TTCCCGTTCGATGTGCCGCTGGATGCTGATCTTGTGATCGACACCCAGGCCACCAGCGTGGACGAAGGCGTGAAACAGGTGCTGGACGTGCTGCGTCAGCGTGGCGCGATCTAAGCGCTAGCCTGCAAGGAAAACCCCGCTTCGGCGGGGTTTTTTCTATTGCTCAGTTCGGGTGAAAAGGCCCTCAGAGTTCAGGGCCTTGCTCGTGTTAGCTGGGCTTGAAACCGTCTTTACCGTTGGCTAGCCGCCATTGCTTGACTATTTCTAGTACTTTTTCAGGTTTACC > NC_002947/1492126‑1492411 | ttCCCGTTCGATGTGCCGCTGGATGCTGATCTTGAGATCGACACCCACGCCACCAGAGTGGAAGAAGGAGTGAAACACGTGCTGGAAGTGCTGCGTCACCGTGGCGCGATCAAAGACCATGCCTACAAGCAAAACCCCGCTAAGGCggg > 8:122044/1‑149 (MQ=255) cGTTCGATGTGCCGCTGGATGCTGATCTTGTGATCGACACCCAGGCCACCAGCGTGGACGAAGGCGTGAAACAGGTGCTGGACGTGCTGCGTCAGCGTGGCGCGATCTAAGCGCTAGCCTGCAAGGAAAACCCCGCTTCGGCGGGGttt > 4:247895/1‑149 (MQ=255) cGTTCGATGTGCCGCTGGATGCTGATCTTGTGATCGACACCCAGGCCACCAGCGTGGACGAAGGCGTGAAACAGGTGCTGGACGTGCTGCGTCAGCGTGGCGCGATCTAAGCGCTAGCCTGCAAGG‑AAACCCCGCCGAAGCGGGGtttt < 2:199843/149‑1 (MQ=255) gTTCGATGTGCCGCTGGATGCTGATCTAGTGATCGACACCCAGCCCACCAGCGTGGACGAACGCGTCAAACAGCTGCTGGACGTGCTGAGTCAGCGTGGAGCGATCTAAGCGCTACCCAGCAAGGAAAACCACCCTTCCGCGGGGtata > 6:267255/1‑146 (MQ=255) cGATGTGCCGCTGGATGCTGATCTTGTGATCGACACCCAGGCCACCAGCGTGGACGAAGGCGTGAAACAGGTGCTGGACGTGCTGCGTCAGCGTGGCGCGATCTAAGCGCTTGCCTGCAAGGAAAACCCCGCTTCGGCGGGGtttttt < 7:122044/148‑1 (MQ=255) cGATGTGCCGCTGGATGCTGATCTTGTGATCGACACCCAGGCCACCAGCGTGGACGAAGGAGTGAAACATGTGCTGGACGTGCTGCGTCAGCGTGGCGCGATCTAAGCGCTAGCCTGCAAGGAAAACCCCGCTTCGGCGGGGtttttt < 6:149051/148‑1 (MQ=255) aTGTGCCGCTGGATGCTGATCTTGTGATCGACACCCAGGCCACCAGCGTGGACGAAGGCGTGAAACAGGTGCTGGACGTGCTGCGTCAGCGTGGCGCGATCTAAGCGCTAGCCTGCAAGGTAAACCCCGCTTCGGCGGGGtttttt < 2:166132/146‑1 (MQ=255) aTGTGCCGCTGGATGCTGATCTTGTGATCGACACCCAGGCCACCAGCGTGGACGAAGGCGTGAAACAGGTGCTGGACGTGCTGCGTCAGCGTGGCGCGATCTAAGCGCTAGCCTGCAAGGGAAACCCCGCTTCGGCGGGGtttttt > 1:166132/1‑146 (MQ=255) aTGTGCCGCTGGATGCTGATCTTGTGATCGACACCCAGGCCACCAGCGTGGACGAAGGCGTGAAACAGGTGCTGGACGTGCTGCGTCAGCGTGGCGCGATCTAAGCGCTAGCCTGCAAGGAAAACCCCGCTTCGGCGGGGTTTTTTCTa < 5:52892/149‑1 (MQ=255) tgCCGCTGGATGCTGATCTTGTGATCGACACCCAGGCCACCAGCGTGGACGAAGGCGTGAAACAGGTGCTGGACGTGCTGCGTCAGCGTGGCGCGATCTAAGCGCTAGCCTGCAAGGAAAACCCCGCCGAAGCGGGGttttccttgca < 5:112579/148‑8 (MQ=255) ccGCTGGATGCTGATCTTGTGATCGACACCCAGGCCACCAGCGTGGACGAAGGCGTGAAACAGGTGCTGGACGTGCTGCGTCAGCGTGGCGCGATCTAAGCGCTAGCCTGCAAGGAAAACCCCGCTTCGGCGGGGTTTTTTCTATTGCt < 6:145058/149‑1 (MQ=255) cGCTGGATGCTGATCTTGTGATCGACACCCAGGCCACCAGCGTGGACGAAGGCGTGAAAGAGGTGCTGGACGTGCTGCGTCAGCGTGGCGCGATCTTAGCGCTAGCCTGCTAGGAAAACCCCGCGTCGGCGGGGGGTTTTGTATTGGTc > 8:201576/1‑149 (MQ=255) aTGCTGATCTTGTGATCGACACCCAGGCCACCAGCGTGGACGAAGGCGTGAAACAGGTGCTGGACGTGCTGCGTCAGCGTGGCGCGATCTAAGCGCTAGCCTGCAAGGAAAACCCCGCTTCGGCGGGGTTTTTTCTATTGCTCAGTTCg < 7:201576/149‑1 (MQ=255) cTGTTCTTGTGATCGACACCCAGGCCACGAGCGTGGACGAAGGCGTGAAACAGGTGCTGGACGTGCTGCGTCAGGGTGGCGCGATCTAAGCGCTAGCCTGCAAGGAAAACCCCGCTTCGGCGGGGTTTTTTCTATTGCTCAGTTCggg < 3:62118/148‑1 (MQ=255) tGATCTTGTGATCGACACCCAGGCCACCAGCGTGGACGAAGGCGTGAAACAGGTGCTGGACGTGCTGCGTCAGCGTGGCGCGATCTAAGCGCTAGCCTGCAAGGAAAACCCCGCTTCGGCGGGGTTTTTTCTATTGCTCAGTTCGGGt > 5:223588/1‑148 (MQ=255) tGATCTTGTGATCGACACCCAGGCCACCAGCGTGGACGAAGGCGTGAAACAGGTGCTGGACGTGCTGCGTCAGCGTGGCGCGATCTAAGCGCTAGCCTGCAAGGAAAACCCCGCTTCGGCGGGGTTTTTTCTATTGCTCAGTTCGGGt > 8:150024/1‑148 (MQ=255) aTCTTGTGATCGACACCCAGGCCACCAGCGTGGACGAAGGCGTGAAACAGGTGCTGGACGTGCTGCGTCAGCGTGGCGCGATCTAAGCGCTAGCCTGCAAGGAAAACCCCGCTTCGGCGGGGTTTTTTCTATTGCTCAGTTCGGGt < 6:223588/146‑1 (MQ=255) tCTTGTGATCGACACCCAGGCCACCAGCGTGGACGAAGGCGTGAAACAGGTGCTGGACGTGCTGCGTCAGCGTGGCGCGATCTAAGCGCTAGCCTGCAAGGAAAACCCCGCCGAAGCGGGGttttccttgc > 8:217052/1‑125 (MQ=255) gACACCCAGGCCACCAGCGTGGACGAAGGCGTGAAACAGGTGCTGGACGTGCTGCGTCAGCGTGGCGCGATCTAAGCGCTAGCCTGCAAGGAAAACCCCGCTTCGGCGGGGTTTTTTCTATTGCTCAGTTCGGGTGAAAAGGCCCTCa < 7:91612/148‑1 (MQ=255) acacCCAGGCCACCAGCGTGGACGAAGGCGTGAAACAGGTGCTGGACGTGCTGCGTCAGCGTGGCGCGATCTAAGCGCTAGCCTGCAAGGAAAACCCCGCTTCGGCGGGGTTTTTTCTATTGCTCAGTTCGGGTGAAAAGGCCCTCaga < 8:74665/149‑1 (MQ=255) ccAGGCCACCAGCGTGGACGAAGGCGTGAAACAGGTGCTGGACGTGCTGCGTCAGCGTGGCGCGATCTAAGCGCTAGCCTGCAAGGAAAACCCCGCTTCGGCGGGGTTTTTTCTATTGCTCAGTTCgg > 8:230934/1‑128 (MQ=255) ccAGGCCACCAGCGTGGACGAAGGCGTGAAACAGGTGCTGGACGTGCTGCGTCAGCGTGGCGCGATCTAAGCGCTAGCCTGCAAGGAAAACCCCGCTTCGGCGGGGTTTTTTCTATTGCTCAGTTCgg < 7:230934/128‑1 (MQ=255) ccAGGCCACCAGCGTGGACGAAGGCGTGAAACAGGTGCTGGACGTGCTGCGTCAGCGTGGCGCGATCTAAGCGCTAGCCTGCAAGGAAAACCCCGCTTCGGCGGGGTTTTTTCTATTGCTCAGTTCGGGTGAAAAGGCCCTCAGAGtt > 1:258734/1‑148 (MQ=255) ccAGGCCACCAGCGTGGACGAAGGCGTGAAACAGGTGCTGGACGTGCTGCGTCAGCGTGGCGCGATCTAAGCGCTAGCCTGCAAGGAAAACCCCGCTTCGGCGGGGTTTTTTCTATTGCTCAGTTCGGGTGAAAAGGCCCTCAGAGTTc < 7:150024/149‑1 (MQ=255) ccaGCGTGGACGAAGGCGTGAAACAGGTGCTGGACGTGCTGCGTCAGCGTGGCGCGATCTAAGCGCTAGCCTGCAAGGAAAACCCCGCTTCGGCGGGGTTTTTTCTATTGCTCAGTTCGGGt < 4:45884/122‑1 (MQ=255) ccaGCGTGGACGAAGGCGTGAAACAGGTGCTGGACGTGCTGCGTCAGCGTGGCGCGATCTAAGCGCTAGCCTGCAAGGAAAACCCCGCTTCGGCGGGGTTTTTTCTATTGCTCAGTTCGGGt > 3:45884/1‑122 (MQ=255) ccaGCGTGGACGAAGGCGTGAAACAGGTGCTGGACGTGCTGCGTCAGCGTGGCGCGATCTAAGCGCTAGCCTGCAAGGAAAACCCCGCTTCGGCGGGGTTTTTTCTATTGCTCAGTTCGGGTGAAAAGGCCCTCAGAGTTCAGGGCCtt < 3:247895/149‑1 (MQ=255) gACGAAGGCGTGAAACAGGTGCTGGACGTGCTGCGTCAGCGTGGCGCGATCTAAGCGCTAGCCTGCAAGGAAAACCCCGCTTCGGCGGGGTTTTTTCTATTGCTCAGTTCGGGTGAAAAGGCCCTCAGAGTTCAGGGCCTTGCTCgtgt > 7:154276/1‑149 (MQ=255) aaaCAGGTGCTGGACGTGCTGCGTCAGCGTGGCGCGATCTAAGCGCTAGCCTGCAAGGAAAACCCCGCTTCGGCGGGGTTTTTTCTATTGCTCAGTTCGGGTGAAAAGGCCCTc > 5:204380/1‑114 (MQ=255) aaaCAGGTGCTGGACGTGCTGCGTCAGCGTGGCGCGATCTAAGCGCTAGCCTGCAAGGAAAACCCCGCTTCGGCGGGGTTTTTTCTATTGCTCAGTTCGGGTGAAAAGGCCCTc < 6:204380/114‑1 (MQ=255) aaCAGGTGCTGGACGTGCTGCGTCAGCGTGGCGCGATCTAAGCGCTAGCCTGCAAGGAAAACCCCGCTTCGGCGGGGTTTTTTCTATTGCTCAGTTCGGGTGAAAAGGCCCTCAGAGTTCAGGGCCTTGCTCGTGTTAGCTGGGCTTg > 6:57066/1‑148 (MQ=255) aGGTGCTGGACGTGCTGCGTCAGCGTGGCGCGATCTAAGCGCTAGCCTGCAAGGAAAACCCCGCTTCGGCGGGGTTTTTTCTATTGCTCAGTTCGGGTGAAAAGGCCCTCAGAGTTCAGGGCCTTGc < 2:236251/127‑1 (MQ=255) aGGTGCTGGACGTGCTGCGTCAGCGTGGCGCGATCTAAGCGCTAGCCTGCAAGGAAAACCCCGCTTCGGCGGGGTTTTTTCTATTGCTCAGTTCGGGTGAAAAGGCCCTCAGAGTTCAGGGCCTTGc > 1:236251/1‑127 (MQ=255) aGGTGCTGGACGTGCTGCGTCAGCGTGGCGCGATCTAAGCGCTAGCCTGCAAGGAAAACCCCGCTTCGGCGGGGTTTTTTCTATTGCTCAGTTCGGGTGAAAAGGCCCTCAGAGTTCAGGGCCTTGCTCGTGTTAGCTGGGCTTGAAAc > 8:215989/1‑149 (MQ=255) tgctgcGTCAGCGTGGCGCGATCTAAGCGCTAGCCTGCAAGGAAAACCCCGCTTCGGCGGGGTTTTTTCTATTGCTCAGTTCGGGTGAAAAGGCCCTCAGAGTTCAGGGCCTTGCTCGTGTTAGCTGGGCTTGAAACCGTCTTTACCGt < 2:258734/149‑1 (MQ=255) gctgcGTCAGCGTGGCGCGATCTAAGCGCTAGCCTGCAAGGAAAACCCCGCTTCGGCGGGGTTTTTTCTATTGCTCAGTTCGGGTGAAAAGGCCCTCAGAGTTCAGGGCCTTGCTCGTGTTAGCTGGGCTTGAAACCGTCTTTACCGtt > 1:15640/1‑149 (MQ=255) gcGTCAGCGTGGCGCGATCTAAGCGCTAGCCTGCAAGGAAAACCCCGCTTCGGCGGGGTTTTTTCTATTGCTCAGTTCGGGTGAAAAGGCCCTCAGAGTTCAGGGCCTTGCTCGTGTTAGCTGGGCTTGAAACCGTCTTTACCGTTGGc > 7:76590/1‑149 (MQ=255) cGTCAGCGTGGCGCGATCTAAGCGCTAGCCTGCAAGGAAAACCCCGCTTCGGCGGGGTTTTTTCTATTGCTCAGTTCGGGTGAAAAGGCCCTCAGAGTTCAGGGCCTTGCTCGTGTTAGCTGGGCTTGAAACCGTCTTTACCGTTGGc > 8:171894/1‑148 (MQ=255) cGTCAGCGTGGCGCGATCTAAGCGCTAGCCTGCAAGGAAAACCCCGCTTCGGCGGGGTTTTTTCTATTGCTCAGTTCGGGTGAAAAGGCCCTCAGAGTTCAGGGCCTTGCTCGTGTTAGCTGGGCTTGAAACCGTCTTTACCGTTGGc < 8:76590/148‑1 (MQ=255) cgcgATCTAAGCGCTAGCCTGCAAGGAAAACCCCGCTTCGGCGGGGTTTTTTCTATTGCTCAGTTCGGGTGAAAAGGCCCTCAGAGTTCAGGGCCTTGCTCGTGTTAGCTGGGCTTGAAACCGTCTTTACCGTTGGCTAGCCGCCATTg > 5:154283/1‑149 (MQ=255) tAAGCGCTAGCCTGCAAGGAAAACCCCGCTTCGGCGGGGTTTTTTCTATTGCTCAGTTCGGGTGAAAAGGCCCTCAGAGTTCAGGGCCTTGCTCGTGTTAGCTGGGCTTGAAACCGTCTTTACCGTTGGCTAGCCGCCATTGCTTGAc > 7:201764/1‑148 (MQ=255) aGCGCTAGCCTGCAAGGAAAACCCCGCTTCGGCGGGGTTTTTTCTATTGCTCAGTTCGGGTGAAAAGGCCCTCAGAGTTCAGGGCCTTGCTCGTGTTAGCTGGGCTTGAAACCGTCTTTACCGtt > 4:251069/1‑125 (MQ=255) aGCGCTAGCCTGCAAGGAAAACCCCGCTTCGGCGGGGTTTTTTCTATTGCTCAGTTCGGGTGAAAAGGCCCTCAGAGTTCAGGGCCTTGCTCGTGTTAGCTGGGCTTGAAACCGTCTTTACCGtt < 3:251069/125‑1 (MQ=255) aGCGCTAGCCTGCAAGGAAAACCCCGCTTCGGCGGGGTTTTTTCTATTGCTCAGTTCGGGTGAAAAGGCCCTCAGAGTTCAGGGCCTTGCTCGTGTTAGCTGGGCTTGAAACCGTCTTTACCGTTGGCTAGCCGCCATTGCtt < 3:160110/143‑1 (MQ=255) gcTAGCCTGCAAGGAAAACCCCGCTTCGGCGGGGTTTTTTCTATTGCTCAGTTCGGGTGAAAAGGCCCTCAGAGTTCAGGGCCTTGCTCGTGTTAGCTGGGCTTGAAACCGTCTTTACCGTTGGCTAGCCGCCATTGCTTGACTATTTc < 7:171894/149‑1 (MQ=255) gCCTGCAAGGAAAACCCCGCTTCGGCGGGGTTTTTTCTATTGCTCAGTTCGGGTGAAAAGGCCCTCAGAGTTCAGGGCCTTGCTCGTGTTAGCTGGGCTTGAAACCGTCTTTACCGTTGGCTAGCCGCCATTGCTTGACTATTTCTa < 5:57066/147‑1 (MQ=255) aaGGAAAACCCCGCTTCGGCGGGGTTTTTTCTATTGCTCAGTTCGGGTGAAAAGGCCCTCAGAGTTCAGGGCCTTGCTCGTGTTAGCTGGGCTTGAAACCGTCTTTACCGTTGGCTAGCCGCCATTGCTTGACTATTTCTAGTACtttt > 1:94745/1‑149 (MQ=255) aaaaaCCCCGCCGAAGCGGGGTTTTTTCTATTGCTCAGTTCGGGTGAAAAGGCCCTCAGAGTTCAGGGCCTTGCTCGTGTTAGCTGGGCTTGAAACCGTCTTTACCGTTGGCTAGCCGCCATTGCTTGACTATTTCTAGTACTTTTTCa > 2:241065/2‑149 (MQ=255) acccccGCTTCGGCGGGGTTTTTTCTATTGCTCAGTTCGGGTGAAAAGGCCCTCAGAGTTCAGGGCCTTGCTCGTGTTAGCTGGGCTTGAAACCGTCTTTACCGTTGGCTAGCCGCCATTGCTTGACTATTTCTAGTACTTTTTCAGGt < 8:120854/147‑1 (MQ=255) ccccGCTTCGGCGGGGTTTTTTCTATTGCTCAGTTCGGGTGAAAAGGCCCTCAGAGTTCAGGGCCTTGCTCGTGTTAGCTGGGCTTGAAACCGTCTTTACCGTTGGCTAGCCGCCATTGCTTGACTATTTCTAGTACTTTTTCAGGtt > 4:233106/1‑148 (MQ=255) ccGCTTCGGCGGGGTTTTTTCTATTGCTCAGTTCGGGTGAAAAGGCCCTCAGAGTTCAGGGCCTTGCTCGTGTTAGCTGGGCTTGAAACCGTCTTTACCGTTGGCTAGCCGCCATTGCTTGACTATTTCTAGTACTTTTTCAGGTTTAc > 2:102029/1‑149 (MQ=255) cGCTTCGGCGGGGTTTTTTCTATTGCTCAGTTCGGGTGAAAAGGCCCTCAGAGTTCAGGGCCTTGCTCGTGTTAGCTGGGCTTGAAACCGTCTTTACCGTTGGCTAGCCGCCATTGCTTGACTATTTCTAGTACTTTTTCAGGTTTAcc < 6:154283/149‑1 (MQ=255) gCTTCGGCGGGGTTTTTTCTATTGCTCAGTTCGGGTGAAAAGGCCCTCAGAGTTCAGGGCCTTGCTCGTGTTAGCTGGGCTTGAAACCGTCTTTACCGTTGGCTAGCCGCCATTGCTTGACTATTTCt < 4:6364/128‑1 (MQ=255) gCTTCGGCGGGGTTTTTTCTATTGCTCAGTTCGGGTGAAAAGGCCCTCAGAGTTCAGGGCCTTGCTCGTGTTAGCTGGGCTTGAAACCGTCTTTACCGTTGGCTAGCCGCCATTGCTTGACTATTTCt > 3:6364/1‑128 (MQ=255) | TTCCCGTTCGATGTGCCGCTGGATGCTGATCTTGTGATCGACACCCAGGCCACCAGCGTGGACGAAGGCGTGAAACAGGTGCTGGACGTGCTGCGTCAGCGTGGCGCGATCTAAGCGCTAGCCTGCAAGGAAAACCCCGCTTCGGCGGGGTTTTTTCTATTGCTCAGTTCGGGTGAAAAGGCCCTCAGAGTTCAGGGCCTTGCTCGTGTTAGCTGGGCTTGAAACCGTCTTTACCGTTGGCTAGCCGCCATTGCTTGACTATTTCTAGTACTTTTTCAGGTTTACC > NC_002947/1492126‑1492411 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |