| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 196,351 | C→G | 25.2% | T619T (ACC→ACG) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 196,351 | 0 | C | G | 25.2% | 141.9 / 56.9 | 87 | T619T (ACC→ACG) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (36/28); new base G (13/9); total (49/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.10e-01 | |||||||||||
GACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAC > NC_002947/196204‑196494 | gACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAAcc > 7:92616/1‑148 (MQ=39) cACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGACCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTa > 1:250143/1‑149 (MQ=255) aCGATCAAGGACTCTGTCGACACCACTACCGCGACCCTGACTGCTAGCCGGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTAc < 4:160628/149‑1 (MQ=14) gATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCg > 5:235976/1‑149 (MQ=39) tCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCG‑tt > 6:260546/1‑149 (MQ=39) tCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCG‑tt < 5:229694/149‑1 (MQ=39) aaCGACTCTGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTg < 8:56424/148‑1 (MQ=255) aCGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTg > 1:174180/1‑147 (MQ=39) aCTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGcc > 5:261024/1‑149 (MQ=39) tCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCgg > 3:192972/1‑149 (MQ=39) cGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGCGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCgg > 7:131147/1‑148 (MQ=255) ggTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCgg < 1:150905/147‑1 (MQ=39) ggTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGc > 1:15807/1‑148 (MQ=39) gACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAAAc > 5:112347/1‑149 (MQ=40) accacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGAcc > 1:42147/1‑147 (MQ=17) cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAGACCCA‑gg < 6:107089/149‑1 (MQ=17) cacTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAAACCCA‑gg > 3:44143/1‑149 (MQ=37) accaCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCG‑TTGAAGCCGGCaaaa < 1:128245/139‑1 (MQ=0) accaCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCG‑TTGAAGCCGGCaaaa > 2:128245/4‑142 (MQ=0) cTACCGCGACCCTGACGGCGAGCCCGTCGTTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGc < 5:260546/149‑1 (MQ=25) tACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCaaaa > 4:133533/1‑140 (MQ=34) tACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCaaaa < 3:133533/140‑1 (MQ=34) ccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTAc < 1:142580/121‑1 (MQ=32) ccGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTAc > 2:142580/1‑121 (MQ=32) cgcgACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTGCACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCg > 5:97103/1‑149 (MQ=21) cTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCATGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGActt > 5:221440/1‑149 (MQ=11) gACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTc > 3:141592/1‑148 (MQ=34) aCGGCTATCCCGTCGTTAAACTAAGGCGGCGTTATCACTTACACCTTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTcc < 7:237461/148‑1 (MQ=11) aCGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTc > 3:21133/1‑147 (MQ=255) ccGTCGTTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCAt < 6:142012/98‑1 (MQ=18) cGTCGGTCACCGAAGGCGGCGTGATCACTTACAGCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCG‑TTGAAGCCGGCAAAACCAA‑GGGCAGCGTCGACTTCCAGACCCCGGc > 5:32129/1‑148 (MQ=11) gTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGa > 3:112462/1‑149 (MQ=34) gTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGa > 3:56026/1‑149 (MQ=34) tCACCGAAGGCGGCATGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGTTTACCG‑TTGAAGCCCGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATGAc < 6:221440/149‑1 (MQ=11) ccGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTc > 7:13095/1‑149 (MQ=34) ccGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTc > 7:62477/1‑149 (MQ=255) aaGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTc > 8:47939/1‑119 (MQ=255) aaGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTc < 7:47939/119‑1 (MQ=255) ggcgTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTAcaacaa > 8:160652/1‑149 (MQ=255) gcgTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTa > 4:95387/1‑142 (MQ=255) gcgTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTa < 3:95387/142‑1 (MQ=255) aTCACTTACACCGTGACCCTGAGCATTCGGGCCCAGACGCCGGTTACTGTGACCCTGTCCAACGGCAAAACCATTACCG‑TTGAAGCCGGCAATACCCC‑GGTCAGGGTCGATTTCCTGACCCCGGCTAATGACGTCTACAACAAGGGtg < 8:152794/148‑2 (MQ=11) aTCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt < 4:112462/148‑1 (MQ=34) aTCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc > 1:242128/1‑149 (MQ=255) tCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTc > 7:105059/1‑148 (MQ=255) aCTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGa < 2:250702/148‑1 (MQ=255) cTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACt > 2:45503/1‑149 (MQ=255) ttACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGCCCCTGTACAACGGCCAAACGATTACCG‑TTGCAGCCGGCAAAACCCA‑GGGCACAGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTg > 5:213491/1‑149 (MQ=11) ctACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACAGTGACCCTGTCCAACGGCCACAACATAACAG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTc > 4:190229/2‑109 (MQ=11) acacCGTGACCGTGAGCAATCCTGCCCAGACGCCGGTTACAGTGACCCTGTCCAACTGCCAAACAATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCGAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGt < 2:250143/148‑1 (MQ=11) cacCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGt > 8:137882/1‑147 (MQ=34) cacCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCa < 8:105059/149‑1 (MQ=255) cGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgtg < 4:56026/149‑1 (MQ=35) aCCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCa < 6:97103/148‑1 (MQ=37) aCCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCa < 6:112347/148‑1 (MQ=37) aCCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCAc > 4:44248/1‑149 (MQ=37) aCCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCa < 8:62477/148‑1 (MQ=11) gtcTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt < 1:75416/130‑1 (MQ=17) gtcTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGtt > 2:75416/3‑132 (MQ=17) ccTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAAACCCA‑GGCCAGCGACGATTTCCAGACCCCGGCCAATGACGTCTACAACCACCGTTCGACTGTCAGTGTCAcc > 4:221483/1‑148 (MQ=11) cTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGt < 3:62380/129‑1 (MQ=255) cTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGt > 4:62380/1‑129 (MQ=255) tgctaTCCTGCCCAGACGCCGGTGAGAGTGAGCCTTTCCAACGGCGAAACCATTTCCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTGGATTTCCAGACCCCGGCGAATGACGTCTac < 2:214078/113‑1 (MQ=11) aGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGAAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTac > 1:214078/1‑117 (MQ=17) aaTCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAAt < 2:84176/105‑1 (MQ=32) aaTCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAAt > 1:84176/1‑105 (MQ=32) ggattGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCg > 4:247914/5‑98 (MQ=18) ggattGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCg < 3:247914/94‑1 (MQ=18) aTCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAAc < 6:261024/149‑1 (MQ=37) cTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCAc > 4:49934/1‑136 (MQ=37) cTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCAc < 3:49934/136‑1 (MQ=37) ccAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCa > 2:226976/1‑125 (MQ=35) ccAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCa < 1:226976/125‑1 (MQ=35) aCGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCTCCATCGAGAACGCCACcggcgg < 8:13095/149‑1 (MQ=255) gCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACaacaac > 1:243492/1‑106 (MQ=32) gCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACaacaac < 2:243492/106‑1 (MQ=32) ttggACAGGGTCACTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAAtt > 2:37188/4‑149 (MQ=255) tGACAGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTc < 4:44143/149‑1 (MQ=39) gACAGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAAACCCAGGGGAAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAAATTc > 1:74083/1‑149 (MQ=255) aCAGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGa < 3:44248/149‑1 (MQ=39) tGACCCTGTCCAACGGCCAAACCATTACCGTTTGAAGCCGGCAAACCCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGc > 1:160635/1‑148 (MQ=255) gTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTcc > 5:93452/1‑59 (MQ=35) ccAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCg < 4:141592/149‑1 (MQ=37) aaCGGCCAAACCATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgt > 2:82297/1‑99 (MQ=34) aaCGGCCAAACCATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAgt < 1:82297/99‑1 (MQ=34) aCGGCCAAACCATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAAt < 7:137882/149‑1 (MQ=38) ccAAACCATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGa > 2:228695/1‑149 (MQ=39) cAAACCATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAc > 7:29642/1‑149 (MQ=39) | GACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCG‑TTGAAGCCGGCAAAACCCA‑GGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGTGTCACCATCGAGAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAC > NC_002947/196204‑196494 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |