Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 1,892,526 C→G 15.0% intergenic (+36/‑59) PP_1697 → / → PP_1698 transcriptional regulator, GntR family/MFS transporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,892,5260CG15.0% 97.5 / 10.6 40intergenic (+36/‑59)PP_1697/PP_1698transcriptional regulator, GntR family/MFS transporter
Reads supporting (aligned to +/- strand):  ref base C (15/19);  new base G (2/4);  total (17/23)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.78e-01

CCCGGTGGTCGTGATCGAGCGCCTGGCCCGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCGCGAGATCACCTCACGGGAACGCAAGACATTCTGGGCCTGTTTCGG  >  NC_002947/1892379‑1892646
                                                                                                                                                   |                                                                                                                        
cccGGTGGTCGTGATCGAGCGCCTGGCCCGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCTGCGCCGtgct                                                                                                                         >  7:141670/1‑149 (MQ=255)
cccGGTGGTCGTGATCGAGCGCCTGGCCCGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCATCGACATTCGTTAAACCGGTCGCTGCACACTTCCCCTGGCTTCGCCGtcct                                                                                                                         >  6:187837/1‑149 (MQ=255)
       gtCGTGATCGAGCGCCTGGCCCGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACgg                                                                                                                  <  6:261992/149‑1 (MQ=255)
          gTGATCGAGCGCCTGGCCCGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCTGCGCCGTGGCAGCACGgcgc                                                                                                               <  3:9697/149‑1 (MQ=255)
                gAGCGCCTGGCCCGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCTGCGCCGTGGCAGCACGGCGCAgaca                                                                                                          <  1:256309/148‑4 (MQ=255)
                gAGCGCCTGGCCCGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGc                                                                                                         >  2:113883/1‑149 (MQ=255)
                        ggCCCGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACg                                                                                                                   >  4:209170/1‑131 (MQ=255)
                        ggCCCGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACg                                                                                                                   <  3:209170/131‑1 (MQ=255)
                         gCCCGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCATTGGCTTCGCCTGc                                                                                                <  8:95079/149‑1 (MQ=255)
                         gCCCGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGc                                                                                                <  4:77630/149‑1 (MQ=255)
                               gATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTca                                                                                          <  8:141670/149‑1 (MQ=255)
                                        ggCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGa                                                                                 <  1:113883/149‑1 (MQ=255)
                                              ccTCTGGAATGGCTCGGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGaa                                                                           <  4:190197/149‑1 (MQ=255)
                                               ctctGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAg                                                                          >  1:198040/1‑149 (MQ=255)
                                                tctGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCTGCGCCGtgctgc                                                                                                                       <  1:154469/103‑1 (MQ=255)
                                                tctGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCTGCGCCGtgctgc                                                                                                                       >  2:154469/1‑103 (MQ=255)
                                                tctGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCacac                                                                                       <  1:182229/135‑1 (MQ=255)
                                                tctGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCacac                                                                                       >  2:182229/1‑135 (MQ=255)
                                                         gcgcCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACACACGACTAGAAGGATAACAAt                                                                 >  8:188439/1‑148 (MQ=255)
                                                          cgccgcTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCa                                                               <  5:77183/149‑1 (MQ=255)
                                                           gccgcTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGc                                                                                                    >  3:242834/1‑111 (MQ=255)
                                                           gccgcTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGc                                                                                                    <  4:242834/111‑1 (MQ=255)
                                                            ccgcTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATg                                                             >  2:61965/1‑149 (MQ=255)
                                                             cgcTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGt                                                            <  8:156634/149‑1 (MQ=255)
                                                                tCGCGCGGCCATGCGCAGCACTTCCGCTACCGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCAACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGtt                                                           >  8:198285/1‑147 (MQ=255)
                                                                    gcgGCCATGCGCAGCACTTCCGCTACCGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTg                                                     >  1:65203/1‑149 (MQ=255)
                                                                     cgGCCATGCGCAGCACTTCCGCTACCGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTgg                                                    <  3:97281/149‑1 (MQ=255)
                                                                              gcagcaCTTCCGCTACCGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATcgc                                              >  8:174093/1‑146 (MQ=255)
                                                                              gcagcaCTTCCGCTACCGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCGCgag                                           <  7:198285/149‑1 (MQ=255)
                                                                               cagcaCTTCCGCTACCGCATCGACATTCGTTAAACCGGTCGCCTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAg                                                                                                             <  2:19535/82‑1 (MQ=255)
                                                                               cagcaCTTCCGCTACCGCATCGACATTCGATAAACCGGTCGCCTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAg                                                                                                             >  1:19535/1‑82 (MQ=255)
                                                                                 gcaCTTCCGCTACCGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCGCGAGATc                                        <  5:144694/149‑1 (MQ=255)
                                                                                  caCTTCCGCTACCGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCGCGAGATCa                                       <  2:198040/149‑1 (MQ=255)
                                                                                     ttCCGCTACCGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCGCGAGATCACCt                                    >  2:239418/1‑149 (MQ=255)
                                                                                         gCTACCGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCGCGAGATCACCTCACg                                >  2:251450/1‑149 (MQ=255)
                                                                                          cTACCGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTGGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCGCGAGATCACCTCACgg                               >  1:85192/1‑149 (MQ=255)
                                                                                             ccGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCGCgaga                                          <  6:118447/135‑1 (MQ=255)
                                                                                             ccGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCGCgaga                                          >  5:118447/1‑135 (MQ=255)
                                                                                                    gagaTTCGTTAATCCGGTCGCTTCACCCTTCACCTGTCTGCGACGTGCTGCAACGGCGCAGTGGCTTCGCCTGCCCGTAACACCCACGAATAGCAGGATAACAATCATGTTCAGCTGGTCGCTCGAGATCACCTCACGGGAACGCAAg                      <  5:187837/145‑1 (MQ=255)
                                                                                                               aaCCGGTCGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCGCGAGATCACCTCACGGGAACGCAAGACATTCTGGGc           <  4:257847/148‑1 (MQ=255)
                                                                                                                                         cTGCGCCGTGGCAGCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCGCGAGATCACCTCACGGGAACGCAAGACATTCTGGGCCTGTTTcgg  <  1:20784/131‑1 (MQ=255)
                                                                                                                                         cTGCGCCGTGGCAGCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCGCGAGATCACCTCACGGGAACGCAAGACATTCTGGGCCTGTTTcgg  <  4:103679/131‑1 (MQ=255)
                                                                                                                                         cTGCGCCGTGGCAGCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCGCGAGATCACCTCACGGGAACGCAAGACATTCTGGGCCTGTTTcgg  >  2:20784/1‑131 (MQ=255)
                                                                                                                                         cTGCGCCGTGGCAGCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCGCGAGATCACCTCACGGGAACGCAAGACATTCTGGGCCTGTTTcgg  >  3:103679/1‑131 (MQ=255)
                                                                                                                                                   |                                                                                                                        
CCCGGTGGTCGTGATCGAGCGCCTGGCCCGCGATTACGCCGGCAAACCTCTGGAATGGCGCCGCTCGCGCGGCCATGCGCAGCACTTCCGCTACCGCATCGACATTCGTTAAACCGGTCGCTTCACCCTTCACCTGTCTGCGCCGTGCTGCCACGGCGCAGTGGCTTCGCCTGCCCGTCACACCCACGACTAGAAGGATAACAATCATGTTCAGCTGGTATCGCGAGATCACCTCACGGGAACGCAAGACATTCTGGGCCTGTTTCGG  >  NC_002947/1892379‑1892646

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑