Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,063,193 | A→C | 14.5% | intergenic (+50/‑157) | PP_1838 → / → PP_1839 | membrane protein/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,063,193 | 0 | A | C | 14.5% | 105.1 / 8.7 | 47 | intergenic (+50/‑157) | PP_1838/PP_1839 | membrane protein/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base A (19/20); new base C (4/3); total (23/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GCCGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAA‑GTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCAC‑‑AGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCG‑CCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAG > NC_002947/2063047‑2063339 | gCCGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAA‑GTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTTCCCCCGCCCACAGGCAtt > 4:254143/1‑149 (MQ=255) tGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAA‑GTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCAC‑‑Aggg < 1:69806/149‑1 (MQ=255) gCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAA‑GTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCAC‑‑AGGGt > 2:89890/1‑149 (MQ=255) cAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAA‑GTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCAC‑‑AAGGtcc > 6:167251/1‑146 (MQ=38) agaagCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAA‑GTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCAC‑‑AGGGTTCGGa > 7:48603/1‑149 (MQ=255) gaagCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAA‑GTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCAC‑‑AGGGTTCGGAc > 7:118397/1‑149 (MQ=255) gCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAA‑GTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCAC‑‑AGGGTTCGGACCTTGTGCAgg < 5:14433/149‑1 (MQ=255) cGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAA‑GTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCAC‑‑AGGGTTCGGACCTTGTGCAGGt < 8:118397/149‑1 (MQ=255) tatCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAACGGAAACCCGGGCCGCCTTGCGGCCCAATAGCCGGCATTCCCGCACCCACACGCATTTCAC‑‑AGGGTTCGGACCTTGTGCAGGTCCt > 1:215839/1‑149 (MQ=255) tatCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAA‑GTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCAC‑‑AAGGTCCGAACCCTGTGCaatgcct < 6:163128/148‑7 (MQ=21) tCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAA‑GTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCCCAGGCATTGCAC‑‑ACGGTGCGGTCCATGGGCCGGTCCagtg > 6:220229/1‑149 (MQ=255) tCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAA‑GTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCAC‑‑AGGTTTCGGACCTTGTGCAGGTCCtgtg < 3:215874/149‑1 (MQ=255) tCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAA‑GTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCAC‑‑AGGGTTCGGACCTTGTGCAGGTCCtgt < 5:269250/148‑1 (MQ=255) ccAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAA‑GTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCAC‑‑AGGGTTCGGACCTtgtg > 8:111538/1‑137 (MQ=255) ccAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAA‑GTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCAC‑‑AGGGTTCGGACCTtgtg < 7:111538/137‑1 (MQ=255) ccGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAA‑GTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCGCACAGGACCTGCAC‑‑AAGGTCCGAACCCTGTGCAATGCCTGTGGGAGCg < 5:167251/149‑1 (MQ=18) ccGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAA‑GTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCAC‑‑AGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCg < 2:112722/149‑1 (MQ=255) ccGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAA‑GTAAACCGGGGCCGCGTTGCGGCCCATTAGCGGGCTTGCCCGCTCCCCCCGGCCTTGCAC‑‑AGGGTTCGGGCCTTTTGCAGGTCCAGTGcgcgcg > 7:160719/1‑149 (MQ=255) ccTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAA‑GTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCAC‑‑AGGGTTCGGACCTTGTGCAGGTCCTGTGCGCGCGGGCAAGCCcgcg > 5:55721/1‑148 (MQ=255) gcgtgGAAAACACCGCCGCGGGGGTCCACGCAACACCTAA‑TAAACCCGGGGCCGCGTGGCGCCCAATTCGCGGGCTTGCCCGCTCCCACCGCCTTGCCAC‑‑AGGGTCCGCCCTTTGTGCTGGTCCTGGGCGCGCGGGCAAGCCCGCGaa < 8:144485/145‑1 (MQ=255) gctgGATAACACCGCCGGCGTGGTGCACGGCACACCGAA‑GTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCAC‑‑AGGGTTAGGCCCGTGTGCAGGTGCGGTGCGCGCGGGCAAGCCcgcgca > 7:144485/1‑145 (MQ=38) ctgGATAACACCGCCGGCGTGGTGCACGGCACACCGAA‑GTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCAC‑‑AGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAAt < 8:48603/147‑1 (MQ=255) ctgGATAACACCGCCGGCGTGGTGCACGGCACACCGAA‑GTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCAC‑‑AGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATg < 2:215839/148‑1 (MQ=255) gATAACACCGCCGGCGTGGTGCACGGCACACCGAA‑GTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCGCCCCCCGGCATTGCAC‑‑AGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGcc > 2:186001/1‑149 (MQ=255) tAACACCGCCGGCGTGGTGCACGGCACACCGAA‑GTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCAC‑‑AGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATgg < 6:127556/144‑1 (MQ=255) tAACACCGCCGGCGTGGTGCACGGCACACCGAA‑GTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCAC‑‑AGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATgg > 5:127556/1‑144 (MQ=255) ccgccgGCGTGGTGCACGGCACACCGAA‑GTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCCCTGCCCCAGGCCTTGGCC‑‑AGGGGTCGGACCATGTGCAGGGGCTGTGCGCGCGGGCCAGCCCGCGAATGGGCCCCGcgc > 6:94908/1‑146 (MQ=37) cgGCGTGGTGCACGGCACACCGAA‑GTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGACCTGCAC‑‑AAGGTCCGAACCCTGTGCAATGCCtgtggg > 5:29798/1‑112 (MQ=14) cgGCGTGGTGCACGGCACACCGAA‑GTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGACCTGCAC‑‑AAGGTCCGAACCCTGTGCAATGCCtgtggg < 6:29798/114‑3 (MQ=14) ggCACACCGAA‑GTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCCCAGGCATTGCAC‑‑CGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAAc < 5:227354/149‑1 (MQ=255) cacaCCGAA‑GTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCAC‑‑AGGGTTCGGACCTTGTGCAGGTCCtg < 4:243960/95‑1 (MQ=255) cacaCCGAA‑GTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCAC‑‑AGGGTTCGGACCTTGTGCAGGTCCtg > 3:243960/1‑95 (MQ=255) cacCGAA‑GTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCAC‑‑AGGGTTCGGACCtt > 3:78338/1‑81 (MQ=255) a‑GTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCCCAGGCATTGCAC‑‑AGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCg > 6:250568/1‑149 (MQ=255) gCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCAC‑‑AGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCG‑CCCCAAGGTCa < 3:108750/149‑1 (MQ=255) ccGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACCGGCATTGCAC‑‑AGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCg < 1:184714/119‑1 (MQ=255) ccGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCAC‑‑AGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCg > 2:184714/1‑119 (MQ=255) cGGCCCATGCGCGGGCTTGCCCGCTCCCAAAGGCATTGCAC‑‑AGGTTTCGGACCTTGTGCAGTTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCG‑CCCCAAGGTCAGTTATTCa < 5:220229/148‑1 (MQ=255) gCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCACCTCTGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCG‑CCCCAAGGTCAGTTATTCAg < 1:89890/149‑1 (MQ=38) ccGCTCCCACAGCCATTGCAC‑‑CGGGTTCGCACCTTGTCCAGGTCCTTGGCGAGCGGCAAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCG‑CCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTc < 3:136544/149‑1 (MQ=255) ccACAGGCATTGCAC‑‑AGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCGCCCCCAAGGTCAGTTATTCAGGCATCACACACATGGTGTTCGTTGa > 7:104725/1‑149 (MQ=255) ccACAGGCATTGCAC‑‑AGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCG‑CCCCAAGGTCAGTTATTCAGGCATCACACACCTgg < 2:256261/138‑1 (MQ=255) ccACAGGCATTGCAC‑‑AGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCG‑CCCCAAGGTCAGTTATTCAGGCATCACACACCTgg > 1:256261/1‑138 (MQ=255) ccACAGGCATTGCAC‑‑AGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCG‑CCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTgcc > 7:199204/1‑147 (MQ=255) ggCATTGCAC‑‑AGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCG‑CCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTgaga < 5:250568/149‑1 (MQ=255) ggCATTGCAC‑‑AGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCG‑CCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTgaga < 1:186001/149‑1 (MQ=255) gCATTGCAC‑‑AGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCG‑CCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGagag > 1:171936/1‑149 (MQ=255) | GCCGGAAATGCTCAAGAAGCTGGAAGCGTATATCCAGACCGCGACCAAGAGCCTGCTGGATAACACCGCCGGCGTGGTGCACGGCACACCGAA‑GTAAACCGGGGCCGCGTTGCGGCCCATTCGCGGGCTTGCCCGCTCCCACAGGCATTGCAC‑‑AGGGTTCGGACCTTGTGCAGGTCCTGTGCGAGCGGGCAAGCCCGCGAATGGGCCCCGCACAATTTTCCCGGACTGAACATTATCCCCG‑CCCCAAGGTCAGTTATTCAGGCATCACACACCTGGTGTTCGTTGACTGAGAG > NC_002947/2063047‑2063339 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |