| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,071,213 | C→G | 12.5% | intergenic (+165/+62) | PP_1846 → / ← PP_1847 | group II intron‑encoding maturase/TonB‑dependent ferric siderophore receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,071,213 | 0 | C | G | 12.5% | 92.5 / 3.6 | 38 | intergenic (+165/+62) | PP_1846/PP_1847 | group II intron‑encoding maturase/TonB‑dependent ferric siderophore receptor |
| Reads supporting (aligned to +/- strand): ref base C (15/18); new base G (3/2); total (18/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.53e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.74e-01 | |||||||||||
GTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTC‑AGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATCCCCCA > NC_002947/2071067‑2071354 | gTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTC‑AGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCgt < 4:133696/149‑1 (MQ=255) gCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTC‑AGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGccc < 8:151228/143‑1 (MQ=255) gCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTC‑AGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGccc > 7:151228/1‑143 (MQ=255) ggtggtGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTC‑AGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGG < 7:105898‑M1/149‑1 (MQ=255) gcggtgtgAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTC‑AGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGG < 6:252325‑M1/147‑1 (MQ=255) tgAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTC‑AGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCC < 7:91752‑M1/149‑1 (MQ=255) agGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTC‑AGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCT < 3:4538‑M1/149‑1 (MQ=255) ggACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTC‑AGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTC > 7:214501‑M1/1‑149 (MQ=255) ggcggGTGTGAATCCGCCTCCTACTCGATTTTCTAGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCA > 1:173088‑M1/1‑149 (MQ=255) ccGCCTCCTACTCGATTTTC‑AGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAgg < 5:257440/149‑1 (MQ=255) cctcctACTCGATTTTC‑AGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAg < 6:203246/145‑1 (MQ=255) cctcctACTCGATTTTC‑AGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAg > 5:203246/1‑145 (MQ=255) cTCGATTTTC‑AGGGCCATTGGGGCTGCTGTGCAGCCCATAGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGc > 2:26288/1‑149 (MQ=255) tCGATTTTC‑AGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAgg > 1:187702/1‑138 (MQ=255) gATTTTC‑AGGGCCATGGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCg < 7:252120/147‑1 (MQ=255) ttttC‑AGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGccc > 5:118189/1‑149 (MQ=255) gCCATTGGGGCTGCTGTGCAGCCCATCGCGCCACAAGCGGGCTTGCCCGGGAAGCCACCACCGTGGTGGATGGCACGGGCTTCGCCGGTGTGCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATc < 3:91895/149‑1 (MQ=37) gctgTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATc > 6:103060/1‑149 (MQ=255) ctgTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCTCAGAGCGGCCCCGGCAATCTAGAAGCTGATc < 5:103060/148‑1 (MQ=255) cAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGaagcc < 5:99549/149‑1 (MQ=255) cAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGaagc < 2:173088/148‑1 (MQ=255) ccaccccaGCGGGCTTGCCCGCTAACCAAACCCCGGGGGGCTTGGCAGGGGCTGGGCCGGTGTGCGCGGCAACGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAg < 6:5847/142‑1 (MQ=255) ccaaccaAGCGGCCTTGCCCCCCAAGCCCACACCGGGGTGGATGGCAGGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCCCAGGCCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAg < 4:175520/144‑1 (MQ=21) cacaAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGc > 6:252483/1‑125 (MQ=255) cacaAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGc < 5:252483/125‑1 (MQ=255) aaGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTAc > 5:239017/1‑149 (MQ=255) gCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTAcgc > 5:67954/1‑149 (MQ=255) cTTGCCCGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGgtaaggtgctgcggtttagactttgtggtacagctggctgccttcctggcggaaccgctcggcctgctcacgca > 6:53407‑M1/1‑75 (MQ=255) ttGCCCGCGAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGgtgaggtgctgcggtttagactttgtggtacagctggctgccttcctggcggaaccgctcggcctgctcacgcat > 8:171334‑M1/1‑74 (MQ=255) cccGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGc < 4:115453/111‑1 (MQ=255) cccGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGc > 3:115453/1‑111 (MQ=255) gcgAAGCAAGCACTGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGGgtaaggtgctgcggtttagactttgtggtacagctggctgccttcctggcggaaccgctcggcctgctcacgcatgccttg > 4:222853‑M1/1‑68 (MQ=255) aGCCAACCCCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACa < 6:67954/149‑1 (MQ=255) ccAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAgg > 6:54478/1‑149 (MQ=255) cGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTAcgc > 4:218280/1‑124 (MQ=255) cGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTAcgc < 3:218280/124‑1 (MQ=255) tggtggATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGaagccgaaa > 4:100647/1‑108 (MQ=255) tggtggATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGaagccgaaa < 3:100647/108‑1 (MQ=255) aCGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTACTTATCCCCCACGAAAta > 4:4341/1‑148 (MQ=255) cTTCGCCCGTGTTCGGGGGCAAGCCCGCTCCCACAGGTCGCTAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATCCCCca < 3:4341/149‑1 (MQ=255) | GTACGCACGGTGGTGTGAGAGGACGGCGGGTGTGAATCCGCCTCCTACTCGATTTTC‑AGGGCCATTGGGGCTGCTGTGCAGCCCATCGCGACACAAGCGGGCTTGCCCGCGAAGCCAACACCGTGGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCGCTCCCACAGGTCGCGAAAGGGCCGCAGAGCGGCCCCGGCAATCTAGAAGCTGATCGAAGCCGAAAGCCGAGCGGTACGCGGTGCCCCCTGGAACAGGTAGTTATCCCCCAGGTAATCCCCCA > NC_002947/2071067‑2071354 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |