| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 197,695 | G→C | 12.6% | T1067T (ACG→ACC) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 197,695 | 0 | G | C | 12.6% | 112.9 / 5.9 | 43 | T1067T (ACG→ACC) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base G (18/18); new base C (2/3); total (21/22) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCTTGTCCAAC > NC_002947/197550‑197842 | cgaTTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAACCCGACCCCg < 4:21133/147‑1 (MQ=12) ttACCGTTGAAGCCGGCAAAACCCAGGGCAGCGGCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCt < 6:9953/149‑1 (MQ=255) ccGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCt > 6:135012/1‑146 (MQ=12) ttGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATAGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGAc > 8:231156/1‑148 (MQ=255) gCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCCGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGAt > 5:31840/1‑149 (MQ=37) ggCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCaa < 2:267344/149‑2 (MQ=9) ccAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACACCGGTTCGACTGTCAGCGTCACCATCGAGAACGCCCCAGCC‑GGTAATTTCGAGCAACTGACCCCGAACCCGACGCCCGCTCCGCCCCCCATCACCGACTCgg > 1:188776/1‑149 (MQ=14) ccAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCgg < 7:87098/149‑1 (MQ=39) ccAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCCGTCGACACCACTACTGCg < 6:31840/148‑1 (MQ=255) aggccccGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAACCCGACTCCGGCTCa > 7:33676/4‑109 (MQ=255) aggccccGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAACCCGACTCCGGCTCa < 8:33676/106‑1 (MQ=255) tCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGGTAATTTCGAGCTACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAg > 1:70714/1‑149 (MQ=255) caacaaCGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCg < 8:133334/139‑1 (MQ=255) caacaaCGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCg > 7:133334/1‑139 (MQ=255) aacGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCg > 4:17945/1‑148 (MQ=255) acGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGaa < 8:168136/149‑1 (MQ=255) cGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAg > 4:98839/1‑149 (MQ=255) aCTGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGa < 6:149363/136‑1 (MQ=255) aCTGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGa > 5:149363/1‑136 (MQ=255) aCTGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGt > 7:133477/1‑149 (MQ=255) cTGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGt > 2:54093/1‑148 (MQ=255) tCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGAt > 1:194389/1‑148 (MQ=255) ccgCGTCACCATCGAGAACGCGACCGGA‑GTTAATTTCGTGCAACTGACCCCTAACCCGACGCCGTCTCAGACCACGAGCACCGACTCGGTCGAAACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGAGCa < 8:247392/147‑1 (MQ=18) gCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCAcc < 3:17945/149‑1 (MQ=255) cATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGGGACCCTg > 1:220327/1‑103 (MQ=255) cATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTg < 2:220327/103‑1 (MQ=40) cGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGTGa > 8:141714/1‑149 (MQ=255) gagaACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGTGa < 2:194389/148‑1 (MQ=255) agaACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGTGAcc > 6:136269/1‑149 (MQ=255) aaCGCCACAGGC‑GGTAATTTCGAGCATCTGACCCCGAACCCGTCGACGGCTCAGACCAGGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGTGACCCt < 2:188776/149‑1 (MQ=255) cacaGGC‑TGTAATTTCGAGCAACTGACGCCGAACCCGACGCCGGCTCAGACCACGATCACCTACTCGGTCGACACCACTACTGCGACCCTGACGGCCTCGCCTAGCGTGACCGAATGCGGCGTTATCACCTACACCGTGACCCTGAg < 1:54093/147‑1 (MQ=17) c‑GGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTg < 7:141714/149‑1 (MQ=255) tAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGgcggcg < 3:147234/113‑1 (MQ=255) tAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGgcggcg > 4:147234/1‑113 (MQ=255) aTTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCa < 8:133477/148‑1 (MQ=255) aGCTACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCg < 2:70714/149‑1 (MQ=255) aaCTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGATCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGt > 3:157399/1‑148 (MQ=255) aaCTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGt > 7:220526/1‑148 (MQ=255) ccGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCt < 5:23623/126‑1 (MQ=255) ccGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCt > 6:23623/1‑126 (MQ=255) ccGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGCCGTGATCACCTACACCGTCACCCTGAGCAATACTGCCCAGACGCCCGTAACCGTGAc > 7:177532/1‑149 (MQ=255) cGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGAcc < 5:136269/149‑1 (MQ=255) cGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCTTGTCCAAc < 3:98839/149‑1 (MQ=255) | CCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGC‑GGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCTTGTCCAAC > NC_002947/197550‑197842 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |