Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,110,150 | T→C | 6.9% | D1379G (GAC→GGC) | PP_1882 ← | membrane protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,110,150 | 0 | T | C | 6.9% | 168.1 / 2.6 | 59 | D1379G (GAC→GGC) | PP_1882 | membrane protein |
Reads supporting (aligned to +/- strand): ref base T (28/26); new base C (2/2); total (30/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.82e-01 |
ATGCTGTAGCTATTCAGGTCTGCCAGCGATCGGCTTTGCCCGCTGTAGCCGATGCTGTAATGCCCGGTCGGGTCGCGGAAGGTTATCGGGTTGCCTTGGCAATAGCCGTAGTAGTTCAGCCCCCCCGCGCCGAAGGGGCTGAGTGCGTCGGGGCTGTGAAAGCGCATCAGCACCGGGTTGTAGGCGCGGTAGCCGCTACCGAGCAGGTACCAGCCGCTGTCGGGATCGAGCGCTTCGCCGTTGTAGCCCAGGGTGCCGAGCAGTGGATCGTCGGCGTGCCGCTCGC > NC_002947/2110003‑2110288 | aTGCTGTAGCTATTCAGGTCTGCCAGCGATCGGCTTTGCCCGCTGTAGCCGATGCTGTAATGCCCGGTCGGGTCGCGGAAGGTTATCGGGTTGCCTTGGCAATAGCCGTAGTAGTTCAGCCCCCCCGCGCCGAAGGGGCTGAGTGCGTc > 3:158903/1‑149 (MQ=255) tAGCTATTCAGGTCTGCCAGCGATCGGCTTTGCCCGCTGTAGCCGATGCTGTAATGCCCGGTCGGGTCGCGGAAGGTTATCGGGTTGCCTTGGCAATAGCCGTAGTAGTTCAGCCCCCCCGCGCCGAAGGGGCTGAGTGCGTCGGGGCt < 5:273189/149‑1 (MQ=255) aTTCAGGTCTGCCAGCGATCGGCTTTGCCCGCTGTAGCCGATGCTGTAATGCCCGGTCGGGTCGCGGAAGGTTATCGGGTTGCCTTGGCAATAGCCGTAGTAGTTCAGCCCCCCCGCGCCGAAGGGGCTGAGTGCGTCgg > 8:173640/1‑140 (MQ=255) aTTCAGGTCTGCCAGCGATCGGCTTTCCCCGCTGTAGCCGATGCTGTAATGCCCGGTCGGGTCGCGGAAGGTTATCGGGTTGCCTTGGCAATAGCCGTAGTAGTTCAGCCCCCCCGCGCCGAAGGGGCTGAGTGCGTCgg < 7:173640/140‑1 (MQ=255) ttCAGGTCTGCCAGCGATCGGCTTTGCCCGCTGTAGCCGATGCTGTAATGCCCGGTCGGGTCGCGGAAGGTTATCGGGTTGCCTTGGCAATAGCCGTAGTAGTTCAGCCCCCCCGCGCCGAAGGGGCTGAGTGCGTCGGGGCTGTGa > 6:99604/1‑147 (MQ=255) gTCTGCCAGCGATCGGCTTTGCCCGCTGTAGCCGATGCTGTATTGACCGGTGGGGTCGCTGAAGGTTATTGGGTTGCCTTGGCAATAGCGGTAGTAGTTCAGCCCCCACGCGGCGAAGGGTCTGAGTGCGTCGGGGGTGTGAATgcgct > 5:209415/1‑148 (MQ=255) tGCCAGCGATCGGCTTTGCCCGCTGTAGCCGATGCTGTAATGCCCGGTCGGGTCGCGGAAGGTTATCGGGTTGCCTTGGCAATAGCCGTAGTAGTTCAGCCCCCCCGCGCCGAAGGGGCTGAGTGCGTCGGGGCTGTGAAAGCGCAt > 3:54402/1‑147 (MQ=255) ccAGCGATCGGCTTTGCCCGCTGTAGCCGATGCTGTAATGCCCGGTCGGGTCGCGGAAGGTTATCGGGTTGCCTTGGCAATAGCCGTAGTAGTTCAGCCCCCCCGCGCCGAAGGGGCTGAGTGCGTCGGGGCTGTGAAAGCGCATCAg > 8:217119/1‑148 (MQ=255) cccGCTGTAGCCGATGCTGTAATGCCCGGTCGGGTCGCGGAAGGTTATCGGGTTGCCTTGGCAATAGCCGTAGTAGTTCAGCCCCCCCGCGCCGAAGGGGCTGAGTGCGTCGGGGCTGTGAAAGCGCATCAGCACCggg > 5:23410/1‑139 (MQ=255) cccGCTGTAGCCGATGCTGTAATGCCCGGTCGGGTCGCGGAAGGTTATCGGGTTGCCTTGGCAATAGCCGTAGTAGTTCAGCCCCCCCGCGCCGAAGGGGCTGAGTGCGTCGGGGCTGTGAAAGCGCATCAGCACCggg < 6:23410/139‑1 (MQ=255) gCTGTAGCCGATGCTGTAATGCCCGGTCGGGTCGCGGAAGGTTATCGGGTTGCCTTGGCAATAGCCGTAGTAGTTCAGCCCCCCCGCGCCGAAGGGGCTGAGTGCGTCGGGGCTGTGAAAGCGCATCAGCACCGGGTTGTAGGCGCGGt < 4:158903/149‑1 (MQ=255) tAGCCGATGCTGTAATGCCCGGTCGGGTCGCGGAAGGTTATCGGGTTGCCTTGGCAATAGCCGTAGTAGTTCAGCCCCCCCGCGCCGAAGGGGCTGAGTGCGTCg < 7:58663/105‑1 (MQ=255) tAGCCGATGCTGTAATGCCCGGTCGGGTCGCGGAAGGTTATCGGGTTGCCTTGGCAATAGCCGTAGTAGTTCAGCCCCCCCGCGCCGAAGGGGCTGAGTGCGTCg > 8:58663/1‑105 (MQ=255) gATGCTGTAATGCCCGGTCGGGTCGCGGAAGGTTATCGGGTTGCCTTGGCAATAGCCGTAGTAGTTCAGCCCCCCCGCGCCGAAGGGGCTGAGTGCGTCGGGGCTGTGAAAGCGCATCAGCACCGGGTTGTAGGCGCGGTAGCCGCTAc > 7:44927/1‑149 (MQ=255) gTAATGCCCGGTCGGGTCGCGGAAGGTTATCGGGTTGCCTTGGCAATAGCCGTAGTAGTTCAGCCCCCCCGCGCCGAAGGGGCTGAGTGCGTCGGGGCTGTGa > 1:230783/1‑103 (MQ=255) gTAATGCCCGGTCGGGTCGCGGAAGGTTATCGGGTTGCCTTGGCAATAGCCGTAGTAGTTCAGCCCCCCCGCGCCGAAGGGGCTGAGTGCGTCGGGGCTGTGa < 2:230783/103‑1 (MQ=255) tAATGCCCGGTCGGGTCGCGGAAGGTTATCGGGTTGCCTTGGCAATAGCCGTAGTAGTTCAGCCCCCCCGCGCCGAAGGGGCTGAGTGCGTCGGGGCTGTGAAAGCGCATCAGCACCGGGTTGTGGGCGCGGTAGCCGCTACCGAGCa < 7:217119/148‑1 (MQ=255) tAATGCCCGGTCGGGTCGCGGAAGGTTATCGGGTTGCCTTGGCAATAGCCGTAGTAGTTCAGCCCCCCCGCGCCGAAGGGGCTGAGTGCGTCGGGGCTGTGAAAGCGCATCAGCACCGGGTTGTAGGCGCGGTAGCCGCTACCGAGCa < 8:44927/148‑1 (MQ=255) tAATGCCCGGTCGGGTCGCGGAAGGTTATCGGGTTGCCTTGGCAATAGCCGTAGTAGTTCAGCCCCCCCGCGCCGAAGGGGCTGAGTGCGGCGGGGCTGTGAAAGCGCATCAGCACCGGGTTGTAGGCGCGGTAGCCGCTACCGAGCAg < 1:35213/149‑1 (MQ=255) cccGGTCGGGTCGCGGAAGGTTATCGGGTTGCCTTGGCAATAGCCGTAGTAGTTCAGCCCCCCCGCGCCGAAGGGGCTGAGTGCGTCGGGGCTGTGAAAGCGCATCAGCACCGGGTTGTAGGCGCGGTAGCCGCTACCGAGCAGGTAc > 2:135940/1‑148 (MQ=255) ccGGTCGGGTCGCGGAAGGTTATCGGGTTGCCTTGTCAATAGCCTTAGTAGTTAAGCCCCCCCGCGCCGAAGGGGCTGAGTGCGTCGGGGCTGTGAAAGCGCATCAGCACCGGGTTGTATGCGCGGTAGCCGCTACCGAGCAGGTACCa < 4:186906/149‑1 (MQ=255) cGGTCGGGTCGCGGAAGGTTATCGGGTTGCCTTGGCAATAGCCGTAGTAGTTCAGCCCCCCCGCGCCGAAGGGGCTGAGTGCGTCGGGGCTGTGAAAGCGCATc > 3:136718/1‑104 (MQ=255) cGGTCGGGTCGCGGAAGGTTATCGGGTTGCCTTGGCAATAGCCGTAGTAGTTCAGCCCCCCCGCGCCGAAGGGGCTGAGTGCGTCGGGGCTGTGAAAGCGCATc < 4:136718/104‑1 (MQ=255) ggtcgCGGAAGGTTATCGGGTTGCCTTGGCAATAGCCGTAGTAGTTCAGCCCCCCCGCGCCGAAGGGGCTGAGTGCGTCGGGGCTGTGAAAgcgc > 8:84341/1‑95 (MQ=255) ggtcgCGGAAGGTTATCGGGTTGCCTTGGCAATAGCCGTAGTAGTTCAGCCCCCCCGCGCCGAAGGGGCTGAGTGCGTCGGGGCTGTGAAAgcgc < 7:84341/95‑1 (MQ=255) gtcgCGGAAGGTTATCGGGTTGCCTTGGCAATAGCCGTAGTAGTTCAGCCCCCCCGCGCCGAAGGGGCTGAGTGCGTCGGGGCTGTGAAAGCGCATCAGCACCGGGTTGTAGGCGCGGTAGc > 8:50496/1‑122 (MQ=255) gtcgCGGAAGGTTATCGGGTTGCCTTGGCAATAGCCGTAGTAGTTCAGCCCCCCCGCGCCGAAGGGGCTGAGTGCGTCGGGGCTGTGAAAGCGCATCAGCACCGGGTTGTAGGCGCGGTAGc < 7:50496/122‑1 (MQ=255) cgGAAGGTTATCGGGTTGCCTTGGCAATAGCCGTAGTAGTTCAGCCCCCCCGCGCCGAAGGGGCTGAGTGCGTCGGGGCTGTGAAAGCGCATCAGCACCGGGTTGTAGGCGCGGTAGCCGCTACCGAGCAGGTACCAGCCGCTGTCgg > 7:169908/1‑148 (MQ=255) ggTTATCGGGTTGCCTTGGCAATAGCCGTAGTAGTTCAGCCCCCCCGCGCCGAAGGGGCTGAGTGCGTCGGGGCTGTGAAAGCGCATCAGCACCGGGTTGTAGGCGCGGTAGCCGCTACCGAGCAGGTACCAGCCGCTGTCGGGATCGa < 1:200205/149‑1 (MQ=255) aTCGGGTTGCCTTGGCAATAGCCGTAGTAGTTCAGCCCCCCCGCGCCGAAGGGGCTGAGTGCGTCGGGGCTGTGAAAGCGCATCAGCACCGGGTTGTAGGCGCGGTAGCCGCTACCGAGCAGGTACCAGCCGCTGTCgg > 8:127035/1‑139 (MQ=255) aTCGGGTTGCCTTGGCAATAGCCGTAGTAGTTCAGCCCCCCCGCGCCGAAGGGGCTGAGTGCGTCGGGGCTGTGAAAGCGCATCAGCACCGGGTTGTAGGCGCGGTAGCCGCTACCGAGCAGGTACCAGCCGCTGTCgg < 7:127035/139‑1 (MQ=255) gTTGCCTTGGCAATAGCCGTAGTAGTTCAGCCCCCCCGCGCCGAAGGGGCTGAGTGCGTCGGGGCTGTGAAAGCGCATCAGCACCGGGTTGTAGGCGCGGTAGCCGCTACCGAGCAGGTACCAGCCGCTGTCGGGATCGAGCGCTTCGc > 4:95331/1‑149 (MQ=255) gTTGCCTTGGCAATAGCCGTAGTAGTTCAGCCCCCCCGCGCCGAAGGGGCTGAGTGCGTCGGGGCTGTGAAAGCGCATCAGCACCGGGTTGTAGGCGCGGTAGCCGCTACCGAGCAGGTACCAGCCGCTGTCGGGATCGAGCGCTTCGc < 3:95331/149‑1 (MQ=255) ttGGCAATAGCCGTAGTAGTTCAGCCCCCCCGCGCCGAAGGGGCTGAGTGCGTCGGGGCTGTGAAAGCGCATCAGCACCGGGTTGTAGGCGCGGTAGCCGCTACCGAGCAGGTACCAGCCGCTGTCGGGATCGAGCGCTTCGCCGTTg > 8:88257/1‑148 (MQ=255) ttGGCAATAGCCGTAGTAGTTCAGCCCCCCCGCGCCGAAGGGGCTGAGTGCGTCGGGGCTGTGAAAGCGCATCAGCACCGGGTTGTAGGCGCGGTAGCCGCTACCGAGCAGGTACCAGCCGCTGTCGGGATCGAGCGCTTCGCCGTTg > 7:191921/1‑148 (MQ=255) ggCAATAGCCGTAGTAGTTCAGCCCCCCCGCGCCGAAGGGGCTGAGTGCGTCGGGGCTGTGAAAGCGCATCAGCACCGGGTTGTAGGCGCGGTAGCCGCTACCGAGCAGGTACCAGCCGCTGTCGGGATCGAGCGCTTCGCCGTTGt < 4:54402/147‑1 (MQ=255) ggCAATAGCCGTAGTAGTTCAGCCCCCCCGCGCCGAAGGGGCTGAGTGCGTCGGGGCTGTGAAAGCGCATCAGCACCGGGTTGTAGGCGCGGTAGCCGCTACCGAGCAGGTACCAGCCGCTGTCGGGATCGAGCGCTTCGCCGTTGTa < 1:135940/148‑1 (MQ=255) tAGCCGTAGTAGTTCAGCCCCCCCGCGCCGAAGGGGCTGAGTGCGTCGGGGCTGTGAAAGCGCATCAGCACCGGGTTGTAGGCGCGGTAGCCGCTACCGAGCAGGTACCAGCCGCTGTCGGGATCGAGCGCTTCGcc > 2:6629/1‑137 (MQ=255) tAGCCGTAGTAGTTCAGCCCCCCCGCGCCGAAGGGGCTGAGTGCGTCGGGGCTGTGAAAGCGCATCAGCACCGGGTTGTAGGCGCGGTAGCCGCTACCGAGCAGGTACCACCCGCTGTCGGGATCGAGCGCTTCGcc < 1:6629/137‑1 (MQ=255) gCCGTAGTAGTTCAGCCCCCCCGCGCCGAAGGGGCTGAGTGCGTCGGGGCTGTGAAAGCGCATCAGCACCGGGTTGTAGGCGCGGTAGCCGCTACCGAGCAGGTACCAGCCGCTGTCGGGATCGAGCGCTTCGCCGTTGTAGCCCAggg > 3:204728/1‑149 (MQ=255) gtagtaGTTCAGCCCCCCCGCGCCGACGGGGCTGAGTGCGTCGGGGCTGTGAAAGCGCATCAGCACCGGGTTGTAGGCGCGGTAGCCGCTACCGAGCAGGTACCAGCCGCTGTCGGGATCGAGCGCTTCGCCGTTGTAGCCCAGGGTGc < 8:169908/149‑1 (MQ=255) gtagtaGTTCAGCCCCCCCGCGCCGAAGGGGCTGAGTGCGTCGGGGCTGTGAAAGCGCATCAGCACCGGGTTGTAGGCGCGGTAGCCGCTACCGAGCAGGTACCAGCCGCTGTCGGGATCGAGCGCTTCGCCGTTGTAGCCCAGGGTGc < 2:32235/149‑1 (MQ=255) gtagtaGTTCAGCCCCCCCGCGCCGAAGGGGCTGAGTGCGTCGGGGCTGTGAAAGCGCATCAGCACCGGGTTGTAGGCGCGGTAGCCGCTACCGAGCAGGTACCAGCCGCTGTCGGGATCGAGCGCTTCGCCGTTGTAGCCCAGGGTGc > 8:92639/1‑149 (MQ=255) cAGCCCCCCCGCGCCGAAGGGGCTGAGTGCGTCGGGGCTGTGAAAGCGCATCAGCACCGGGTTGTAGGCGCGGTAGCCGCTACCGAGCAGGTACCAGCCGCTGTCGGGATCGAGCGCTTCGCCGTTGTAGCCCAGGGTGCCGAGCAGt < 5:99604/148‑1 (MQ=255) ccccccGCGCCGAAGGGGCTGAGTGCGTCGGGGCTGTGAAAGCGCATCAGCACCGGGTTGTAGGCGCGGTAGCCGCTACCGAGCAGGTACCAGCCGCTGTCGGGATCGAGCGCTTCGCCGTTGTAGCCCAGGGTGCCGAGCAGTGGAtc < 8:191921/149‑1 (MQ=255) cccccGCGCCGAAGGGGCTGAGTGCGTCGGGGCTGTGAAAGCGCATCAGCACCGGGTTGTAGGCGCGGTAGCCGCTACCGAGCAg > 7:113567/1‑85 (MQ=255) cccccGCGCCGAAGGGGCTGAGTGCGTCGGGGCTGTGAAAGCGCATCAGCACCGGGTTGTAGGCGCGGTAGCCGCTACCGAGCAg < 8:113567/85‑1 (MQ=255) cGAAGGGGCTGAGTGCGTCGGGGCTGTGAAAGCGCATCAGCACCGGGTTGTAGGCGCGGTAGCCGCTACCGAGCAGGTACCAGCCGCTGTCGGGATCGAgc > 5:46743/1‑101 (MQ=255) cGAAGGGGCTGAGTGCGTCGGGGCTGTGAAAGCGCATCAGCACCGGGTTGTAGGCGCGGTAGCCGCTACCGAGCAGGTACCAGCCGCTGTCGGGATCGAgc < 6:46743/101‑1 (MQ=255) cGAAGGGGCTGAGTGCGTCGGGGCTGTGAAAGCGCATCAGCACCGGGTTGTAGGCGCGGTAGCCGCTACCGAGCAGGTACCAGCCGCTGTCGGGATCGAGCGCTTCGCCGTTGTAGCCCAGGGTGCCGAGCAGTGGATCGTCGGCGTGc > 7:246338/1‑149 (MQ=255) cGAAGGGGCTGAGTGCGTCGGGGCTGTGAAAGCGCATCAGCACCGGGTTGTAGGCGCGGTAGCCGCTACCGAGCAGGTACCAGCCGCTGTCGGGATCGAGCGCTTCGCCGTTGTAGCCCAGGGTGCCGAGCAGTGGATCGTCGGCGTGc > 2:242438/1‑149 (MQ=255) gAAGGGGCAGAGTGCGTCGGGGCTGTGAAAGCGCATCAGCAACGGGTTGTAGGCGCGGTAGCCACTACCGAGCAGGTACCAGCCGCTGTCGGGATCGAGCGCTTCGCCGTTGTAGCCCAGGGTGCCGAGCAGTGGATCGTCGGCTTGcc > 2:161566/1‑149 (MQ=255) aaGGGGCTGAGTGCGCCGGGGCTGTGAAAGCACATCAGCACCGGGTTGTAGGCGCGGTAGCCGCTACCGAGCAGGTACCAGCCGCTGTCGGGATCGAGCGCTTCGCCGTTGTAGCCCAGGGTGCCGAGCa > 3:234084/1‑130 (MQ=255) aaGGGGCTGAGTGCGCCGGGGCTGTGAAAGCACATCAGCACCGGGTTGTAGGCGCGGTAGCCGCTACCGAGCAGGTACCAGCCGCTGTCGGGATCGAGCGCTTCGCCGTTGTAGCCCAGGGTGCCGAGCa > 3:237918/1‑130 (MQ=255) aaGGGGCTGAGTGCGCCGGGGCTGTGAAAGCACATCAGCACCGGGTTGTAGGCGCGGTAGCCGCTACCGAGCAGGTACCAGCCGCTGTCGGGATCGAGCGCTTCGCCGTTGTAGCCCAGGGTGCCGAGCa < 4:234084/130‑1 (MQ=255) aaGGGGCTGAGTGCGCCGGGGCTGTGAAAGCACATCAGCACCGGGTTGTAGGCGCGGTAGCCGCTACCGAGCAGGTACCAGCCGCTGTCGGGATCGAGCGCTTCGCCGTTGTAGCCCAGGGTGCCGAGCa < 4:237918/130‑1 (MQ=255) ggCTGAGTGCGTCGGGGCTGTGAAAGCGCATCAGCACCGGGTTGTAGGCGCGGTAGCCGCTACCGAGCAGGTACCAGCCGCTGTCGGGATCGAGCGCTTCGCCGTTGTAGCCCAGGGTGCCGAGCAGTGGATCGTCGGCGTGCCGCTCg > 4:115246/1‑149 (MQ=255) ggCTGAGTGCGTCGGGGCTGTGAAAGCGCATCAGCACCGGGTTGTAGGCGCGGTAGCCGCTACCGAGCAGGTACCAGCCGCTGTCGGGATCGAGCGCTTCGCCGTTGTAGCCCAGGGTGCCGAGCAGTGGATCGTCGGCGTGCCGCTCg < 4:204728/149‑1 (MQ=255) gCTGAGTGCGTCGGGGCTGTGAAAGCGCATCAGCACCGGGTTGTAGGCGCGGTAGCCGCTACCGAGCAGGTACCAGCCGCTGTCGGGATCGAGCGCTTCGCCGTTGTAGCCCAGGGTGCCGAGCAGTGGATCGTCGGCGTGCCGCTCGc < 7:92639/149‑1 (MQ=255) | ATGCTGTAGCTATTCAGGTCTGCCAGCGATCGGCTTTGCCCGCTGTAGCCGATGCTGTAATGCCCGGTCGGGTCGCGGAAGGTTATCGGGTTGCCTTGGCAATAGCCGTAGTAGTTCAGCCCCCCCGCGCCGAAGGGGCTGAGTGCGTCGGGGCTGTGAAAGCGCATCAGCACCGGGTTGTAGGCGCGGTAGCCGCTACCGAGCAGGTACCAGCCGCTGTCGGGATCGAGCGCTTCGCCGTTGTAGCCCAGGGTGCCGAGCAGTGGATCGTCGGCGTGCCGCTCGC > NC_002947/2110003‑2110288 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |