Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,189,646 | G→T | 9.8% | V171V (GTG→GTT) | PP_1937 → | helicase |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,189,646 | 0 | G | T | 9.8% | 105.8 / 2.2 | 38 | V171V (GTG→GTT) | PP_1937 | helicase |
Reads supporting (aligned to +/- strand): ref base G (17/17); new base T (2/2); total (19/19) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.70e-01 |
TGATTCGCGCCGGTCACGTGCGAATTCGTTACCCGACAGGGTACAGACGGCTACATGCAAAAATGTACTGCTCCGCTGGAGCAGTGACGCTTGGGTCCAGCAACTACACTGGACCAGGTTTACATACTCAGCATGAAGCGAACGTGCGCTTCACCTCTGGGGAAAGAGCGCGCTTTGTTGAGACCAATCTCCTAGCTGAGTGCTTTTGGAGCTTGGGGAGAAACGCCGAAGACGCTTTCATTGAGCTGCTAGAGCAGCTTCTCAAGTTCGTCACCTGGCAAGAGGCTTT > NC_002947/2189501‑2189789 | tGATTCGCGCCGGTCACGTGCGAATTCGTTACCCGACAGGGTACAGACGGCTACATGCAAAAATGTACTGCTCCGCTGGAGCAGTGACGCTTGGGTCCAGCAACTACACTGGACCAGGTTTACATACTCAGCATGAAGCGAACGTgcgc > 1:109985/1‑149 (MQ=255) gcCGGTCACGTGCGAATTCGTTACCCGACAGGGTACAGACGGCTACATGCAAAAATGTACTGCTCCGCTGGAGCAGTGACGCTTGGGTCCAGCAACTACACTGGACCAGGTTTACATACTCAGCATGAAGCGCACGTTCGCTTCatgct < 7:73896/149‑5 (MQ=255) gAATTCGTTACCCGACAGGGTACAGACGGCTACATGCAAAAATGTACTGCTCCGCTGGAGCAGTGACGCTTGGGTCCAGCAACTACACTGGACCAGGTTTACATACTCAGCATGAAGCGAACGTGCGCTTCACCTCTGGGGAAAGAgcg < 8:96667/149‑1 (MQ=255) aaTTCGTTACCCGACAGGGTACAGACGGCTACATGCAAAAATGTACTGCTCCGCTGGAGCAGTGACGCTTGGGTCCAGCAACTACACTGGACCAGGTTTACATACTCAGCATGAAGCGAACGTGCGCTTCACCTCTGGGGAAAGAgcgc < 5:49733/149‑1 (MQ=255) tCGTTACCCGACAGGGTACAGACGGCTACATGCAAAAATGTACTGCTCCGCTGGAGCAGTGACGCTTGGGTCCAGCAACTACACTGGACCAGGTTTACATACTCAGCATGAAGCGAACGTGCGCTTCACCTCTgggg < 3:21071/137‑1 (MQ=255) tCGTTACCCGACAGGGTACAGACGGCTACATGCAAAAATGTACTGCTCCGCTGGAGCAGTGACGCTTGGGTCCAGCAACTACACTGGACCAGGTTTACATACTCAGCATGAAGCGAACGTGCGCTTCACCTCTgggg > 4:21071/1‑137 (MQ=255) gTTACCCGACAGGGTACAGACGGCTACATGCAAAAATGTACTGCTCCGCTGGAGCAGTGACGCTTGGGTCCAGCAACTACACTGGACCAGGTTTACATACTCAGCATGAAGCGAACGTGCGCTTCACCTCTGGGGAAAGAGCGCGCttt > 3:63979/1‑149 (MQ=255) cccGACAGGGTACAGACGGCTACATGCAAAAATGTACTGCTCCGCTGGAGCAGTGACGCTTGGGTCCAGCAACTACACTGGACCAGGTTTACATACTCAGCATGAAGCGAACGTGCGCTTCACCTCTGGGGAAAGAGCGCGCTttgtt < 6:57897/148‑1 (MQ=255) aGGGTACAGACGGCTACATGCAAAAATGTACTGCTCCGCTGGAGCAGTGACGCTTGGGTCCAGCAACTACACTGGACCAGGTTTACATACTCAGCATGAAGCGAACGTgcgc > 6:2348/1‑112 (MQ=255) aGGGTACAGACGGCTACATGCAAAAATGTACTGCTCCGCTGGAGCAGTGACGCTTGGGTCCAGCAACTACACTGGACCAGGTTTACATACTCAGCATGAAGCGAACGTgcgc < 5:2348/112‑1 (MQ=255) aCGGCTACATGCAAAAATGTACTGCTCCGCTGGAGCAGTGACGCTTGGGTCCAGCAACTACACTGGACCAGGTTTACATACTCAGCATGAAGCGAACGTGCGCTTCACCTCTGGGGAAAGAGCGCGCTTTGTTGAGACCAATCTCCTAg < 6:218627/149‑1 (MQ=255) tACATGCAAAAATGTACTGCTCCGCTGGAGCAGTGACGCTTGGGTCCAGCAACTACACTGGACCAGGTTTACATACTCAGCATGAAGCGAACGTGCGCTTCACCTCTGGGGAAAGAGCGCGCTTTGTTGAGACCAATCTCCTAGCTGAg > 1:98275/1‑149 (MQ=255) cAAAAATGTACTGCTCCGCTGGAGCAGTGACGCTTGGGTCCAGCAACTACACTGGACCAGGTTTACATACTCAGCATGAAGCGAACGTGCGCtt > 8:5469/1‑94 (MQ=255) cAAAAATGTACTGCTCCGCTGGAGCAGTGACGCTTGGGTCCAGCAACTACACTGGACCAGGTTTACATACTCAGCATGAAGCGAACGTGCGCtt < 7:5469/94‑1 (MQ=255) cAAAAATGTACTGCTCCGCTGGAGCAGTGACGCTTGGGTCCAGCAACTACACTGGACCAGGTTTACATACTCAGCATGAAGCGAACGTGCGCTTCACCTCTGGGGAAAGAGCGCGCTTTGTTGAGACCAATCTCCTAGCTGa > 4:42316/1‑142 (MQ=255) cAAAAATGTACTGCTCCGCTGGAGCAGTGACGCTTGGGTCCAGCAACTACACTGGACCAGGTTTACATACTCAGCATGAAGCGAACGTGCGCTTCACCTCTGGGGAAAGAGCGCGCTTTGTTGAGACCAATCTCCTAGCTGa < 3:42316/142‑1 (MQ=255) aaaTGTACTGCTCCGCTGGAGCAGTGACGCTTGGGTCCAGCAACTACACTGGACCAGGTTTACATACTCAGCATGAAGCGAACGTGCGCTTCACCTCTGGGGAAAGAGCGCGCTTTGTTga > 1:80383/1‑121 (MQ=255) aaaTGTACTGCTCCGCTGGAGCAGTGACGCTTGGGTCCAGCAACTACACTGGACCAGGTTTACATACTCAGCATGAAGCGAACGTGCGCTTCACCTCTGGGGAAAGAGCGCGCTTTGTTga < 2:80383/121‑1 (MQ=255) aaaTGTACTGCTCCGCTGGAGCAGTGACGCTTGGGTCCAGCAACTACACTGGACCAGGTTTACATACTCAGCATGAAGCGAACGTGCGCTTCACCTCTGGGGAAAGAGCGCGCTTTGTTGAGACCAATCTCCTAGCTGAGTGCTTTTgg < 6:196056/149‑1 (MQ=255) cTCCGCTGGAGCAGTGACGCTTGGGTCCAGCAACTACACTGGACCAGGTTTACATACTCAGCATGAAGCGAACGTGCGCTTCACCTCTGGGGAAAGAGCGCGCTTTGTTGAGACCAATCTCCTAGCTGAGTGCTTTTGGAGCTTggg < 2:109985/147‑1 (MQ=255) tCCGCTGGAGCAGTGACGCTTGGGTCCAGCAACTACACTGGACCAGGTTTACATACTCAGCATGAAGCGAACGTGCGCTTCACCTCTGGGGAAAGAGCGCGCTTTGTTGAGACCAATCTCCTAGCTGAGTGCTTTTGGAGCTTggg > 2:210871/1‑146 (MQ=255) tCCGCTGGAGCAGTGACGCTTGGGTCCAGCAACTACACTGGACCAGGTTTACATACTCAGCATGAAGCGAACGTGCGCTTCACCTCTGGGGAAAGAGCGCGCTTTGTTGAGACCAAACTCCTAGCTGAGTGCTTTTGGCGCTTggc > 2:92918/1‑145 (MQ=255) gTGACGCTTGGGTCCAGCAACTACACTGGACCAGGTTTACATACTCAGCATGAAGCGAACGTGCGCTTCACCTCTGGGGAAAGAGCGCGCTTTGTTGAGACCAATCTCCTAGCTGAGTGCTTTTGGAGCTTGGGGAGAAACGCCGAAGa > 8:107465/1‑149 (MQ=255) ggTCCATCAACTCGACTGGACCAGGTTTACATACTCAGCATGAAGCGAACGTGCGCTTCACCTCTGGGGAAAGAGCGCGCTTTGTTGAGACCAATCTCCTAGCTGAGTGCTTTTGGAGCTTGGGGAGAAACGCCGAAGACGGTTTCttt < 6:43286/149‑1 (MQ=255) cAGCAACTACACTGGACCAGGTTTACATACTCAGCATGAAGCGAACGTGCGCTTCACCTCTGGGGAAAGAGCGCGCTTTGTTGAGACCAATCTCCTAGCTGAGTGCTTTTGGAGCTTGGGGAGAAACGCCGAAGACGCTTTCATTGAg < 4:63979/148‑1 (MQ=255) aGCAACTACACTGGACCAGGTTTACATACTCAGCATGAAGCGAACGTGCGCTTCACCTCTGGGGAAAGAGCGCGCTTTGTTGAGACCAATCTCCTAGCTGAGTGCTTTTGGAGCTTGGGGAGAAACGCCGAAGACGCTTTCATTGAgct > 3:29421/1‑149 (MQ=255) cacTGGACCAGGTTTACATACTCAGCATGAAGCGAACGTGCGCTTCACCTCTGGGGAAAGAGCGCGCTTTGTTGAGACCAATCTCCTAGCTGAGTGCTTTTGGAGCTTGGGGAGAAACGCCGAAGACGCTTTCATTGAGCTGCTAGagc < 7:107465/149‑1 (MQ=255) acTGGAACAGGTTTACATACTCAGCATGAAGCGAACGTGCGCTTCACCTATGGGGAAAGAGCGCGCTTTGTTGAGACCAATCTCCTAGCTGAGTGCTTTTGGAGCTTGGGGAGAAACGCCGAAGACGCATTCATTGAGCTGCTagag > 8:32363/1‑147 (MQ=255) cAGGTTTACATACTCAGCATGAAGCGAACGTGCGCTTCACCTCTGGGGAAAGAGCGCGCTTTGTTGAGACCAATCTCCTAGCTGAGTGCTTTTGGAGCTTGGGGAGAAACGCCGAAGACGCTTTCATTGAGCTGCTAGAGCAGCTtctc < 8:229149/149‑1 (MQ=255) cAGGTTTACATACTCAGCATGAAGCGAACGTGCGCTTCACCTCTGGGGAAAGAGCGCGCTTTGTTGAGACCAATCTCCTAGCTGAGTGCTTTTGGAGCTTGGGGAGAAACGCCGAAGACGCTTTCATTGAGCTGCTAGAGCAGCTtct > 1:22965/1‑148 (MQ=255) ttACATACTCAGCATGAAGCGAACGTGCGCTTCACCTCTGGGGAAAGAGCGCGCTTTGTTGAGACCAATCTCCTAGCTGAGTGCTTTTGGAGCTTGGGGAGAAACGCCGAAGACGCTTTCATTGAGCTGCTAGAGCAGCTTCTCAAGtt > 4:89442/1‑149 (MQ=255) tCAGCATGAAGCGAACGTGCGCTTCACCTCTGGGGAAAGAGCGCGCTTTGTTGAGACCAATCTCCTAGCTGAGTGCTTTTGGAGCTTGGGGAGAAACGCCGAAGACGCTTTCATTGAGCTGCTAGAGCAGCTTCTCAAGTTCGTCACCt > 8:87640/1‑149 (MQ=255) cagaggtGAAGCGCACGTTCGCTTCACCTCTGGGGAAAGAGCGCGCTTTGTTGAGACCAATCTCCTAGCTGAGTGCTTTTGGAGCTTGGGGAGAAACGCCGAAGACGCTTTCATTGAGCTGCTAGAGCAGCTTCTCAAGTTCGTCACCt > 8:159529/7‑149 (MQ=255) cAGCATCAAGCGAACGTGCGCTACACCACTAGCGAAAGAGCGCGCTTTGATGAGACCAATCACCAAGCAGAGAGGTTTTCCAGCATGGGGAGAAACCCCGAAGACGCTTTCATTGAGCTGCTAGAGGAGCTTCTCAAGTTCgagcccag > 4:265022/1‑142 (MQ=255) aGCATGAAGCGAACGTGCGCTTCACCTCTGGGGAAAGAGCGCGCTTTGTTGAGACCAATCTCCTAGCTGAGTGCTTTTGGAGCTTGGGGAGAAACGCCGAAGACGCTTTCATTGAGCTGCTAGAGCAGCTTCTCAAGTTCGt < 4:250325/142‑1 (MQ=255) aGCATGAAGCGAACGTGCGCTTCACCTCTGGGGAAAGAGCGCGCTTTGTTGAGACCAATCTCCTAGCTGAGTGCTTTTGGAGCTTGGGGAGAAACGCCGAAGACGCTTTCATTGAGCTGCTAGAGCAGCTTCTCAAGTTCGt > 3:250325/1‑142 (MQ=255) aGCATGAAGCGAACGTGCGCTTCACCTCTGGGGAAAGAGCGCGCTTTGTTGAGACCAATCTCCTAGCTGAGTGCTTTTGGAGCTTGGGGAGAAACGCCGAAGACGCTTTCATTGAGCTGCTAGAGCAGCTTCTCAAGTTCGTCACCt < 2:98275/147‑1 (MQ=255) gtGAAGCGCACGTTCGCTTCACCTCTGGGGAAAGAGCGCGCTTTGTTGAGACCAATCTCCTAGCTGAGTGCTTTTGGAGCTTGGGGAGAAACGCCg < 5:259089/95‑1 (MQ=255) gtGAAGCGCACGTTCGCTTCACCTCTGGGGAAAGAGCGCGCTTTGTTGAGACCAATCTCCTAGCTGAGTGCTTTTGGAGCTTGGGGAGAAACGCCg > 6:259089/2‑96 (MQ=255) aTGAAGCGAACGTGCGCTTCACCTCTGGGGAAAGAGCGCGCTTTGTTGAGACCAATCTCCTAGCTGAGTGCTTTTGGAGCTTGGGGAGAAACGCCGAAGACGCTTTCGTTGAGCTGCTAGAGCAGCTTCTCAAGTTCGTCACCTGGc > 3:169821/1‑147 (MQ=255) aaCGTGCGCTTCACCTCTGGGGAAAGAGCGCGCTTTGTTGAGACCAATCTCCTAGCTGAGTGCTTTTGGAGCTTGGGGAGAAACGCCGAAGACGCTTTCATTGAGCTGCTAGAGCAGCTTCTCAAGTTCGTCACCTGGCAAGAGGCttt < 4:29421/149‑1 (MQ=255) | TGATTCGCGCCGGTCACGTGCGAATTCGTTACCCGACAGGGTACAGACGGCTACATGCAAAAATGTACTGCTCCGCTGGAGCAGTGACGCTTGGGTCCAGCAACTACACTGGACCAGGTTTACATACTCAGCATGAAGCGAACGTGCGCTTCACCTCTGGGGAAAGAGCGCGCTTTGTTGAGACCAATCTCCTAGCTGAGTGCTTTTGGAGCTTGGGGAGAAACGCCGAAGACGCTTTCATTGAGCTGCTAGAGCAGCTTCTCAAGTTCGTCACCTGGCAAGAGGCTTT > NC_002947/2189501‑2189789 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |