Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,271,666 | C→T | 8.7% | intergenic (+50/‑50) | PP_t32 → / → PP_t33 | tRNA‑Asp/tRNA‑Asp |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,271,666 | 0 | C | T | 8.7% | 129.7 / 2.9 | 46 | intergenic (+50/‑50) | PP_t32/PP_t33 | tRNA‑Asp/tRNA‑Asp |
Reads supporting (aligned to +/- strand): ref base C (21/21); new base T (2/2); total (23/23) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.16e-01 |
CCAGAGAGGAACGCACTGCGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTG‑GGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATCTTCGTTTCAAGGTCCCT > NC_002947/2271521‑2271811 | ccAGAGAGGAACGCACTGCGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATg > 6:128212/1‑149 (MQ=255) cAGAGAGGAACGCACTGCGCAGCGGTAGTTCAGTCGGTTAGAATACAGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGc > 3:222915/1‑149 (MQ=255) ggAACGCACTGCGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTg‑gg < 5:128212/149‑1 (MQ=255) gAACGCAGTGCGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGTCTGGCACGGGTCTGAAGCCACAAGGCACATGCCTTG‑GGc < 4:170866/149‑1 (MQ=255) gAACGCACTGCGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTG‑GGc > 7:155066/1‑149 (MQ=255) gAACGCACTGCGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCC‑CAAGGCATGTGCCTTgtggc < 1:224205/149‑5 (MQ=21) gAACGCACTGCGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCC‑CAAGGCATGTGCCTTgtggc > 2:224205/1‑145 (MQ=21) aCTGCGCAGCGGTAGTTCAGTCTGTTAGAAAACCGGCCTGTCACGACGGGGGTCGCGGGTTCGAGACCAGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCCCCGGTCTGAAGCCACAAGGCACAGGCGGTG‑GGCGGATcc > 8:174740/1‑149 (MQ=21) ggTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTG‑GGCTGATCCCAGTTTCAAt < 7:111968/149‑1 (MQ=255) aGTCGGTTAGAATACCGGCCTGTCACGCCGGGTGTCGCGGGTTCGAGTCCAGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTATGAAGCCACAAGGCACATGCCATG‑CGCTGATCCCAGTTTCAATCGGgagc > 8:175163/1‑148 (MQ=37) gTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTG‑GGCTGATCCCAGTTTCAATCgg > 2:86433/1‑139 (MQ=255) gTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTATTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTG‑GGCTGATCCCAGTTTCAATCgg < 1:86433/139‑1 (MQ=255) gAATACCGGCCTGTCACGCCGGGGTTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTG‑GGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGaa < 7:175163/148‑1 (MQ=255) ccTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTG‑GGCTGATCCCAGTTTCAATCGGGCGCAAGCCTTAACGATACGCAg < 1:269233/149‑1 (MQ=255) ccTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTG‑GGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAg < 7:153172/149‑1 (MQ=255) tCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTG‑GGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCg < 5:83884/147‑1 (MQ=255) aCGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCt < 1:5717/96‑1 (MQ=255) aCGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCt > 2:5717/1‑96 (MQ=255) gCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTG‑GGCTGATCCCAGTTTCAATCTGGCGCAAGCCTGAACTATACGCAGCGGTAGtt < 8:155066/149‑1 (MQ=255) cGGGGGTCGCGGGTTCGAGGCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTG‑GGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCa < 7:174740/149‑1 (MQ=255) gTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTAATTAACAGATCGGTGCCTGTCACCGTTCTGAAGCCACAAGTCACATGCCTTG‑GGCTTATCCCATTTTCATTCGTGCTCATTGCTTATCTATTCGCAGCGGTAGTTCAGTCgg < 4:222915/149‑1 (MQ=255) cGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTG‑GGCTGATCCCAGtt < 8:247780/93‑1 (MQ=255) cGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTG‑GGCTGATCCCAGtt > 7:247780/1‑93 (MQ=255) tCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTG‑GGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGaa > 3:138023/1‑105 (MQ=255) tCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTG‑GGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGaa < 4:138023/105‑1 (MQ=255) cGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTG‑GGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACg > 5:226396/1‑149 (MQ=255) tGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTG‑GGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTg > 5:108569/1‑141 (MQ=255) tGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTG‑GGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTg < 6:108569/141‑1 (MQ=255) aTTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTG‑GGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGc > 6:169280/1‑105 (MQ=255) aTTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTG‑GGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGc < 5:169280/105‑1 (MQ=255) gATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTG‑GGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTcc > 5:124086/1‑149 (MQ=255) gTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTG‑GGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTcc > 3:85214/1‑149 (MQ=255) gCACCGGTCTGAAGCCACAAGGCACATGCCTTG‑GGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTgcgc > 5:67868/1‑149 (MQ=255) cGGTCTGAAGCCACAAGGCACATGCCTTG‑GGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATc > 8:62906/1‑149 (MQ=255) gAAGCCACAAGGCACATGCCTTG‑GGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATCTTCGtt > 6:93114/1‑149 (MQ=255) cccaAGGCATGTGCCTTGTGGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAg < 6:103302/118‑1 (MQ=17) cccaAGGCATGTGCCTTGTGGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAg > 5:103302/3‑120 (MQ=17) cacaAGGCACATGCCTTG‑GGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATCTTCGt < 1:138324/143‑1 (MQ=255) cacaAGGCACATGCCTTG‑GGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATCTTCGt > 2:138324/1‑143 (MQ=255) aaGGCACATGCCTTG‑GGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATCTTCTTTTCAAg < 7:208507/146‑1 (MQ=255) aaGGCACATGCCTTG‑GGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATCTTCCTTTCAAg > 8:208507/1‑146 (MQ=255) ggCACATGCCTTG‑GGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATCTTCGTTTc > 7:198522/1‑141 (MQ=255) ggCACATGCCTTG‑GGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATCTTCGTTTc < 8:198522/141‑1 (MQ=255) ggCACATGCCTTG‑CGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGTGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATCTTCGTTTCAAGGTccc < 6:226396/149‑1 (MQ=255) gCACATGCCTTG‑GGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATCTTCGTTTCAAGGTccc > 4:240706/1‑148 (MQ=255) gCACATGCCTTG‑GGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATCTTCGTTTCAAGGTCCCt < 7:62906/149‑1 (MQ=255) cacaTGCCTTG‑GGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGa > 5:169815/1‑111 (MQ=255) cacaTGCCTTG‑GGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGa < 6:169815/111‑1 (MQ=255) | CCAGAGAGGAACGCACTGCGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATTTTTCAGTAACAGATGGGTGCCTGGCACCGGTCTGAAGCCACAAGGCACATGCCTTG‑GGCTGATCCCAGTTTCAATCGGGCGCAAGCCTGAACGATACGCAGCGGTAGTTCAGTCGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGTCCCGTCCGCTGCGCCATCTTCGTTTCAAGGTCCCT > NC_002947/2271521‑2271811 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |