| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,278,822 | T→A | 15.4% | intergenic (‑243/‑39) | PP_2007 ← / → fadH | P‑47‑like protein/2,4‑dienoyl‑CoA reductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,278,822 | 0 | T | A | 15.4% | 51.5 / 4.9 | 26 | intergenic (‑243/‑39) | PP_2007/fadH | P‑47‑like protein/2,4‑dienoyl‑CoA reductase |
| Reads supporting (aligned to +/- strand): ref base T (11/11); new base A (2/2); total (13/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.04e-01 | |||||||||||
TTTGGCGATCAAGCCAGGCGAACCTTATAGCGCTGAAGTTCTGGAGCCTTCCCGACAGTCGCTGCCTCTGCTGTTCATCACGATCATTAACTTGTCAGTTTTGATCATTGAGGCAATTCAAACGGCTGTTTAATGTCGCAGGCAGACAAACGACGGGGCCCGCCACCCAGTGAGGTGCCCGCATTCCGTGATCACGCCATCAGGGGACCTTTCCATGGCCGCCGACCGCTACCCGCACCTGCTTGCTCCGCTGGACCTGGGCTTTACCA > NC_002947/2278692‑2278960 | tttGGCGATCAAGCCAGGCGAACCTTATAGCGCTGAAGTTCTGGAGCCTTCCCGACAGTCGCTCCCTCTGCTGTTCATCACCAACATTAACTTGTCAGTTTTGAACATTGAGGCAATTCAAACGCCTCTTTAATTTCGCAGGCAGACa > 8:212009/1‑148 (MQ=255) tGGCGATCAAGCCAGGCGAACCTTATAGCGCTGAAGTTCTGGAGCCTTCCCGACAGTCGCTGCCTCTGCTGTTCATCACGATCATTAACTTGTCAGTTTTGATCATTGAGGCAATTCAAACGGCTGTTTAATGTCGCAGGCAGACaaa < 2:194013/148‑1 (MQ=255) cTGAAGTTCTGGAGCCTTCCCGACAGTCGCTGCCTCTGCTGTTCATCACGATCATTAACTTGTCAGTTTTGATCATTGAGGCAATTCAAACGGCTGTTTAATGTCGCAGGCAGACAAACGACGGGGCCCGCCACCCAGTGAGGTGCCCg < 8:138301/149‑1 (MQ=255) cTGAAGTTCTGGAGCCTTCCCGACAGTCGCTGCCTCTGCTGTTCATCACGATCATTAACTTGTCAGTTTTGATCATTGAGGCAATTCAAACGGCTGTTTAATGTCGCAGGCAGACAAACGACGGGGCCCGCCACCCAGTGAGGTGCCCg > 4:64038/1‑149 (MQ=255) cTGGAGCCTTCCCGACAGTCGCTGCCTCTGCTGTTCATCACGATCATTAACTTGTCAGTTTTGATCATTGAGGCAATTCAAACGGCTGTTTAATGTCGCAGGCAGACAAACGACGGGGCCCGCCACCCAGTGAGGTGCCCGCATTCCGt > 2:185821/1‑149 (MQ=255) gAGCCTTCCCGACAGTCGCTGCCTCTGCTGTTCATCACGATCATTAACTTGTCAGTTTTGATCATTGAGGCAATTCAAACGGCTGTTTAATGTCGCAGGCAGACAAACGACGGGGCCCGCCACCCAGTGAGGTGCCCGCATTCCGt < 1:185821/146‑1 (MQ=255) gAGCCTTCCCGACAGTCGCTGCCTCTGCTGTTCATCACGATCATTAACTTGTCAGTTTTGATCATTGAGGCAATTCAAACGGCTGTTTAATGTCGCAGGCAGACAAACGACGGGGCCCGCCACCCAGTGAGGTGCCCGCATTCCGTGAt > 5:3806/1‑149 (MQ=255) ttCCCGACAGTCGCTGCCTCTGCTGTTCATCACGATCATTAACTTGTCAGTTTTGATCATTGAGGCAATTCAAACGGCTGTTTAATGTCGCAGGCAGACAAACGACGGGGCCCGCCACCCAGTGAGGTGCCCGCATTCCGTGATCACGc > 2:156109/1‑149 (MQ=255) aGTCGGTGCCTCTGTTGTTCATCACTATATTTAACTTGTCTGTTTTGATCATTGAGGCAATTCAATCGGCTGTTTAATGTCGAAGGCAGACAAACGACGGGGCCCGCCACCCAGTGAGGTGCCCGCATTCCGTGATCACGCCATCAggg < 7:212009/149‑1 (MQ=255) gCCTCTGCTGTTCATCACGATCATTAACTTGTCAGTTTTGATCATTGAGGCAATTCAAACGGCTGTTTAATGTCGCAGGCAGACAAACGACGGGGCCCGCCACCCAGTGAGGTGCCCGCATTCCGTGATCACGCCATCAGGGGACCttt > 7:69495/1‑149 (MQ=255) ccTCTGCTGTTCATCACGATCATTAACTTGTCAGTTTTGATCATTGAGGCAATTCAAACGGCTGTTTAATGTCGCAGGCAGACAAACGACGGGGCCCGCCACCCAGTGAGGTGCCCGCATTCCGTGATCACGCCATCAGGGGACCttt < 6:3806/148‑1 (MQ=255) tctGCTGTTCATCACGATCATTAACTTGTCAGTTTTGATCATTGAGGCAATTCAAACGGCTGTTTAATGTCGCAGGCAGACAAACGACggg < 6:121084/91‑1 (MQ=255) tctGCTGTTCATCACGATCATTAACTTGTCAGTTTTGATCATTGAGGCAATTCAAACGGCTGTTTAATGTCGCAGGCAGACAAACGACggg > 5:121084/1‑91 (MQ=255) ctgTTCATCACGATCATTAACTTGTCAGTTTTGATCATTGAGGCAATTCAAACGGCTGTTTAATGTCGCAGGCAGACAAACGACGGGGCCCGCCACCCAGTGAGGTGCCCGCATTCCGTGATCACGCCATCAGGGGACCTTTCCATg < 8:69495/147‑1 (MQ=255) atcaCGATCATTAACTTGTCAGTTTTGATCATTGAGGCAATTCAAACGGCTGTTTAATGTCGCAGGCAGACAAACGACGGGGCCCGCCACCCAGTGAGGTGCCCGCATTCCGTGATCACGCCATCAGGGGACCTTTCCATGGCCGCCGa > 4:27465/1‑149 (MQ=255) atcaCGATCATTAACTTGTCAGTTTTGATCATTGAGGCAATTCAAACGGCTGTTTAATGTCGCAGGCAGACAAACGACGGGGCCCGCCACCCAGTGAGGTGCCCGCATTCCGTGATCACGCCATCAGGGGACCTTTCCATGGCCGCCGa > 7:100800/1‑149 (MQ=255) tcaCGATCATTAACTTGTCAGTTTTGATCATTGAGGCAATTCAAACGGCTGTTTAATGTCGCAGGCAGACAAACGACGGGGCCCGCCACCCAGTGAGGTGCCCGCATTCCGTGATCACGCCATCAGGGGACCTTTCCATGGCCGCCGAc < 1:156109/149‑1 (MQ=255) gATCATTAACTTGTCAGTTTTGATCATTGAGGCAATTCAAACGGCTGTTTAATGTCGCAGGCAGACAAACGACGGGGCCCGCCACCCAGTGAGGTGCCCGCATTCCGTGATCACGCCATCAGGGGACCTTTCCAt > 4:108629/1‑135 (MQ=255) gATCATTAACTTGTCAGTTTTGATCATTGAGGCAATTCAAACGGCTGTTTAATGTCGCAGGCAGACAAACGACGGGGCCCGCCACCCAGTGAGGTGCCCGCATTCCGTGATCACGCCATCAGGGGACCTTTCCAt < 3:108629/135‑1 (MQ=255) ttAACTTGTCAGTTTTGATCATTGAGGCAATTCAAACGGCTGTTTATTGTCGCAGGCAGACAAACGACGGGGCCCGCCACCCAGTGAGGTGCCCGCATTCCGTGATCACGCCATCAGGGGACCTTTCCATGGCCGCCGACCGCTACCCg > 2:99754/1‑149 (MQ=255) ctaGTTTTGATCATTGAGGCAATTCACACGGCGGTTAAATGTCGCCGGCAGACAAACGACGGGGCCCGCCACCCAGTGAGGTGCCCGCATTCCGTGATCACGCCATCAGGGGACCTTTCCATGGCCGCCGACCGCTACCCGCACCtgc < 3:139291/146‑1 (MQ=255) gTTTTGATCATTGAGGCAATTCAAACGGCTGTTAAATGTCGCAGGCAGACAAACGACGGGGCCCGCCACCCAGTGAGGTGCCCGCATTCCGTGATCACGCCATCAGGGGACCTTTCCATGGCCGCCGACCGCTACCCGCAGCtgc > 4:139291/1‑145 (MQ=255) gTTTTGATCATTGAGGCAATTCAAACGGCTGTTAAATGTCGCAGGCAGACAAACGACGGGGCCCGCCACCCAGTGAGGTGCCCGCATTCCGTGATCACGCCATCAGGGGACCTTTCCATGGCCGCCGACCGCTACCCGCACCtgc > 4:142833/1‑145 (MQ=255) gTTTTGATCATTGAGGCAATTCAAACGGCTGTTAAATGTCGCAGGCAGACAAACGACGGGGCCCGCCACCCAGTGAGGTGCCCGCATTCCGTGATCACGCCATCAGGGGACCTTTCCATGGCCGCCGACCGCTACCCGCACCtgc < 3:142833/145‑1 (MQ=255) cAATTCAAACGGCTGTTTAATGTCGCAGGCAGACAAACGACGGGGCCCGCCACCCAGTGAGGTGCCCGCATTCCGTGATCACGCCATCAGGGGACCTTTCCATGGCCGCCGACCGCTACCCGCACCTGCTTGCTCCGCTGGACCTGGGc < 8:100800/149‑1 (MQ=255) aaCGGCTGTTTAATGTCGCAGGCAGACAAACGACGGGGCCCGCCACCCAGTGAGGTGCCCGCATTCCGTGATCACGCCATCAGGGGACCTTTCCATGGCCGCCGACCGCTACCCGCACCTGCTTGCTCCGCTGGACCTGGGCTTTacca < 3:64038/149‑1 (MQ=255) | TTTGGCGATCAAGCCAGGCGAACCTTATAGCGCTGAAGTTCTGGAGCCTTCCCGACAGTCGCTGCCTCTGCTGTTCATCACGATCATTAACTTGTCAGTTTTGATCATTGAGGCAATTCAAACGGCTGTTTAATGTCGCAGGCAGACAAACGACGGGGCCCGCCACCCAGTGAGGTGCCCGCATTCCGTGATCACGCCATCAGGGGACCTTTCCATGGCCGCCGACCGCTACCCGCACCTGCTTGCTCCGCTGGACCTGGGCTTTACCA > NC_002947/2278692‑2278960 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |