Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,488,197 | G→C | 6.9% | intergenic (+53/‑349) | PP_2182 → / → PP_2183 | hypothetical protein/formate dehydrogenase subunit gamma |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,488,197 | 0 | G | C | 6.9% | 184.8 / 4.0 | 58 | intergenic (+53/‑349) | PP_2182/PP_2183 | hypothetical protein/formate dehydrogenase subunit gamma |
Reads supporting (aligned to +/- strand): ref base G (24/30); new base C (2/2); total (26/32) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.82e-01 |
CAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATGGCAGCCCATTGCCGGGGCTGCCGTCTGGCAGGCCCGGCAATGGACTAGGTTCGGTTTCGAGAGCCTGGTGCATGCAACGATGGTTTCAAGA‑CCCACCTGATCGGCAAGCCGTGGCAGATGATGCCGGGGCGTAATCACGTGCGTCGGTTTCAGAATGCGCCTG > NC_002947/2488051‑2488343 | cAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCCTAGCCATGCTGGATGGCAGCCCATTGCCGGGGCt > 2:7107/1‑149 (MQ=255) ccAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATGGCAGCCCATTGCCGGGGCTGcc < 1:258785/149‑1 (MQ=255) aGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATGGCAGCCCATTGCCGGGGCTGCCGt < 3:262146/149‑1 (MQ=255) ccGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATGGCAGCCCATTGCCGGGGCTGCCGTCTgg < 6:136105/149‑1 (MQ=255) cGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATGGCAGCCCATTGCCGGGCCTGccagacggc > 5:245368/1‑142 (MQ=255) gACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATGGCAGCCCATTGCCGGGGCTGCCGTCTgg > 1:85643/1‑147 (MQ=255) aCGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATGGCAGCCCATTGCCGGGGCTGCCGTCTGGCAg > 3:244665/1‑149 (MQ=255) aCGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTAAGTCGCGTTCTGCCCCGTAGCCATGCTGTATGGCAGACCATTTCCGGGGCTGCCGACTGGCAg > 8:240597/1‑149 (MQ=255) aTCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGGTCAGTCGCTTTCTTCCCCGTAGCCATGCTGGATGGCAGCCCATTGCCGGGGCTGCCGTCTGGCAGGCCCg < 5:124794/149‑1 (MQ=255) tCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATGGCAGCCCATTGCCGGGCCTGCCAGACGGCAGCCCCgg < 6:245368/149‑1 (MQ=255) gTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATGGCAGCCCATTGCCGGGCCTGCCAGACGGCAGCCCCGGc < 6:93570/148‑1 (MQ=255) gAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATGGCAGCCCATTGCCGGGGCTGCCGTCTGGCAGGCCCGGCAATgg < 5:8297/149‑1 (MQ=255) tCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATGGCAGCCCATTGCCGGGGCTGCCGTCTGGCAGGCCCGGCAATGGAc > 7:64188/1‑147 (MQ=255) gcccaggcccagGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATGGCAGCCCATTGCCGGGGCTGCCGTCTGGCAGGCCCGGCAATGGACTAGGTTCg > 8:198039/1‑149 (MQ=255) cccaggcccaggCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATGGCAGCCCATTGCCGGGGCTGCCGTCTGGCAGGCCCGGCAATGGACTAGGTTCgg > 7:179653/1‑149 (MQ=255) cccaggcccaggCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATGGCAGCCCATTGCCGGGGCTGCCGTCTGGCAGGCCCGGCAATGGACTAGGTTCgg < 3:93702/149‑1 (MQ=255) caggcccaggcTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATGGCAGCCCATTGCCGGGGCTGCCGTCTGGCAGGCCCGGCAATGGACTAGGTTCGGtt < 2:85643/149‑1 (MQ=255) ggcccaggcTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATGGCAGCCCATTGCCGGGGCTGCCGTCTGGCAGGCCCGGCAATGGACTAGGTTCGGTTTc < 5:12920/149‑1 (MQ=255) gcccaggcTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATGGCAGCCCATTGCCGGGGCTGCCGTCTGGCAGGCCCGGCAATGGACTAGGTTCGGTTTCg < 5:228524/149‑1 (MQ=255) ccaggcTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATGGCAGCCCATTGCCGGGGCTGCCGTCTGGCAGGCCCGGCAATGGACTAGGTTCGGTTTc > 4:18803/1‑146 (MQ=255) ggcTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATGGCAGCCCATTGCCGGGGCTGCCGTCTGGc > 4:34227/1‑114 (MQ=255) cTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATGGCAGCCCATTGCCGGGGCTGCCGTCTGGCAGGCCCGGCAATGGACTAGGTTCGGTTTCg > 3:97804/1‑142 (MQ=255) cTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATGGCAGCCCATTGCCGGGGCTGCCGTCTGGCAGGCCCGGCAATGGACTAGGTTCGGTTTCg < 4:97804/142‑1 (MQ=255) ggCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATGGCAGCCCATTGCCGGGGCGGCCGTCTGGCAGGCCCGGCAATGGACTAGGTTCGGTTTCGAGAGCCTGGtg < 8:188097/149‑1 (MQ=255) cccccGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATTGCAGCCCATTGCCGGGGCTGCCATcc < 4:116211/103‑2 (MQ=255) cccccGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATGGCAGCCCATTGCCGGGGCTGCCATcc > 3:116211/1‑102 (MQ=255) ccgccgccgACACCGTAACGTTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGTATGGCAGCCCATTGCCGGGGCTGCCGTCTGGCAGGCCCGGCAATGGACTAGGTTCGGTTTCGAGAGCCTGGtgcatgc < 7:170307/149‑1 (MQ=255) acacCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATGGCAGCCCATTGCCGGGGCTGCCGTCTGGCAGGCCCGGCAATGGACTAGGTTCGGTTTCGAGAGCCTGGTGCATGCAACGATGGt < 7:198039/149‑1 (MQ=255) cGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATGGCAGCCCATTGCCGGGGCTGCCGTCTGGCAGGCCCGGCAATGGACTAGGTTCGGTTTCGAGAGCCTGGtgcatg < 2:32917/135‑1 (MQ=255) cGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATGGCAGCCCATTGCCGGGGCTGCCGTCTGGCAGGCCCGGCAATGGACTAGGTTCGGTTTCGAGAGCCTGGtgcatg > 1:32917/1‑135 (MQ=255) cAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATGGCAGCCCATTGCCGGGGCTGCCGTCTGGCAGGCCCGGCAATGGACTAGGTTCGGTTTCGAGAGCCTGGTGCATGCAACGATGGTTTCAAGA‑CCCAcc < 8:64188/148‑1 (MQ=255) aGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATGGCAGCCCATTGCCGGGGCTGCCGTCTGGCAGGCCCGGCAATGGACTAGGTTCGGTTTCGAGAGCCTGGTGCATGCAACGATGGTTTCAAGA‑CCCACCTg < 3:18803/149‑1 (MQ=255) cTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATGGCAGCCCATTGCCGGGGCTGCCGTCTGGCAGGCCCGGCAATGGACTAGGTTCGGTTTCGAGAGCCTGGTGCATGCAACGATGGTTTCAAGA‑CCCACCTGATc > 5:8814/1‑149 (MQ=255) ccGACTGAGCTCATTCGCGTTCTGCCCCGTAGCCATTCTGTATGGCAGCCCATTGCCGGGGCTGCCGTCTGGCAGGCCCGGCAATGGACTAGGTTCGGTTTCGAGAGCCTGGTGCATGCAACGATGGTTTCAAGA‑CCCACCTGATCg < 7:240597/147‑1 (MQ=255) cGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATGGCAGCCCATTGCCGGGGCTGCCGTCTGGCAGGCCCGGCAATGGACTAGGTTCGGTTTCGAGAGCCTGGTGCATGCAACGATGGTTTCAAGA‑CCCACCTGATCGGc > 8:145885/1‑148 (MQ=255) gACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATGGCAGCCCATTGCCGGGGCTGCCGTCTGGCAGGCCCGGCAATGGACTAGGTTCGGTTTCGAGAGCCTGGTGCATGCAACGATGGTTTCAAGA‑CCCACCTGATCGGc > 7:20601/1‑147 (MQ=255) aCTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATGGCAGCCCATTGCCGGGGCTGCCGTCTGGCAGGCCCGGCAATGGACTAGGTTCgg < 1:214415/95‑1 (MQ=255) aCTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATGGCAGCCCATTGCCGGGGCTGCCGTCTGGCAGGCCCGGCAATGGACTAGGTTCgg > 2:214415/1‑95 (MQ=255) cTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATGGCAGCCCATTGCCGGGGCTGCCGTCTGGCAGGCCCGGCAATGGACTAGGTTCGGTTTCGAGAGCCTGGTGCATGCAACGATGGTTTCAAGA‑CCCACCTGATCGGCAAGCCGTgg < 4:244665/149‑1 (MQ=255) tCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATGGCAGCCCATTGCCGGGGCTGCCGTCTGGCAGGCCCGGCAATGGACTAGGTTCGGTTTCGAGAGCCTGGTGCATGCAACGATGGTTTCAAGA‑CCCACCTGATCGGCAAGCCGTgg > 2:164359/1‑148 (MQ=255) aGTCGCGTTCTGCCCCGTAGCCATGCTGGATGGCAGCCCATTGCCGGGGCTGCCGTCTGGCAGGCCCGGCAATGGACTAGGTTCGGTTTCGAGAGCCTGGTGCATGCAACGATGGTTTCAAGA‑CCCACCTGATCGGCAAGCCGTGGc < 5:28829/147‑1 (MQ=255) cgTTCTGCCCCGTAGCCATGCTGGATGGCAGCCCATTGCCGGGGCTGCCGTCTGGCAGGCCCGGCAATGGACTAGGTTCGGTTTCGAGAGCCTGGTGCATGCAACGATGGTTTCAAGA‑CCCACCTGATCGGCAAGCCGTGGCAgatgat > 5:257809/1‑149 (MQ=255) gTTCTGCCCCGTAGCCATGCTGGATGGCAGCCCATTGCCGGGGCTGCCGTCTGGCAGGCCCGGCAATGGACTAGGTTCGGTTTCGAGAGCCTGGTGCATGCAACGATGGTTTCAAGATCCCACCTGATCGGCAAGCCGTGGCAgatgat < 1:164359/149‑1 (MQ=255) tGCCCCGTAGCCATGCTGGATGGCAGCCCATTGCCGGGGCTGCCGTCTGGCAGGCCCGGCAATGGACTAGGTTCGGTTTCGAGAGCCTGGTGCATGCAACGATGGTTTCAAGA‑CCCACCTGATCGGCAAGCCGTGGCAGATGATGCCgg > 4:30196/1‑149 (MQ=255) tAGCCATGCTGGATGGCAGCCCATTGCCGGGGCTGCCGTCTGGCAGGCCCGGCAATGGACTAGGTTCGGTTTCGAGAGCCTGGTGCATGCAACGATGGTTTCAAGA‑CCCACCTGATCGGCAAGCCGTGGCAGATGATGCCGGGGCGTaa < 6:8814/149‑1 (MQ=255) gCCATGCTGGATGGCAGCCCATTGCCGGGGCTGCCGTCTGGCAGGCCCGGCAATGGACTAGGTTCGGTTTCGAGAGCCTGGTGCATGCAACGATGGTTTCAAGA‑CCCACCTGATCGGCAAGCCGTGGCAGATGATGCCggg < 2:90665/141‑1 (MQ=255) gCCATGCTGGATGGCAGCCCATTGCCGGGGCTGCCGTCTGGCAGGCCCGGCAATGGACTAGGTTCGGTTTCGAGAGCCTGGTGCATGCAACGATGGTTTCAAGA‑CCCACCTGATCGGCAAGCCGTGGCAGATGATGCCggg > 1:90665/1‑141 (MQ=255) aTGCTGGATGGCAGCCCATTGCCGGGGCTGCCGTCTGGCAGGCCCGGCAATGGACTAGGTTCGGTTTCGAGAGCCTGGTGCATGCAACGATGGTTTCAAGA‑CCCACCTGATCGGCAAGCCGTGGCAGATGATGCCGGGGCGTAATCACg > 2:44698/1‑149 (MQ=255) tGCTGGATGGCAGCCCATTGCCGGGGCTGCCGTCTGGCAGGCCCGGCAATGGACTAGGTTCGGTTTCGAGAGCCTGGTGCATGCAACGATGGTTTCAAGA‑CCCACCTGATCGGCAAGCCGTGGCAGATGATGCCGGGGCGTAATCACGt > 3:89548/1‑149 (MQ=255) tGCTGGATGGCAGCCCATTGCCGGGGCTGCCGTCTGGCAGGCCCGGCAATGGACTAGGTTCGGTTTCGAGAGCCTGGTGCATGCAACGATGGTTTCAAGA‑CCCACCTGATCGGCAAGCCGTGCCAGATGATGCCGGGGCGTAATCACGt < 1:7107/149‑1 (MQ=255) gATGGCAGCCCATTGCCGGGGCTGCCGTCTGGCAGGCCCGGCAATGGACTAGGTTCGGTTTCGAGAGCCTGGTGCATGCAACGATGGTTTCAAGA‑CCCACCTGATCGGCAAGCCGTGGCAGATGATGCCGGGGCGTAATCACGTGCGTc < 1:44698/149‑1 (MQ=255) aTGGCAGCCCATTGCCGGGGCTGCCGTCTGGCAGGCCCGGCAATGGACTACGTTCGGTTTCGAGAGCCTGGTGCATGCAACGATGGTTTCAAGA‑CCCACCTGATCGGCAAGCCGTGGCAGATGATGCCGGGGCGTAATCACGTGCGTCg < 7:145885/149‑1 (MQ=255) tcatcccATTGCCGGTGCTGCCGTCTGTCAGGCCCGGAAATGGACTAGGTTCGGTTTCGAGAGCCTGGTGCATGCAACGATGGTTTCAAGA‑CGCACCTTATCGGCAAGCCGTTGCAGATGATGCCGGTGCGTAATCACGTGCGTCGGt < 8:179653/144‑1 (MQ=255) aGCCCATTGCCGGGGCTGCCGTCTGGCAGGCCCGGCAATGGACTAGGTTCGGTTTCGAGAGCCTGGTGCATGCAACGATGGTTTCAAGa < 7:39845/89‑1 (MQ=255) aGCCCATTGCCGGGGCTGCCGTCTGGCAGGCCCGGCAATGGACTAGGTTCGGTTTCGAGAGCCTGGTGCATGCAACGATGGTTTCAAGa > 8:41085/1‑89 (MQ=255) aGCCCATTGCCGGGGCTGCCGTCTGGCAGGCCCGGCAATGGACTAGGTTCGGTTTCGAGAGCCTGGAGCATGCAACGATGGTTTCAAGa < 7:41085/89‑1 (MQ=255) aGCCCATTGCCGAGGCTGCCGTCTGGCAGGCCCGGCAATGGACTAGGTTCGGTTTCGAGAGCCTGGTGCATGCAACGATGGTTTCAAGa > 8:39845/1‑89 (MQ=255) tccATTGCCGGGCCTGCCAGACGGCAGCCCCGGCAATGGACTAGGTTCGGTTTCGAGAGCCTGGTGCATGCAACGATGGTTTCAAGA‑CCCACCTGATCGGCAAGCCGTGGCAGATGATGCCGGGGCGTAATCACGTGCGTCGGttt > 8:11229/2‑146 (MQ=38) gggCTGCCGTCTGGCAGGCCCGGCAATGGACTAGGTTCGGTTTCGAGAGCCTTGTGCATGCAACGATGGTTTCAAGA‑CCCACCTGATCGGCAAGCCGTGGCAGATGATGCCGGGGCGTAATCACGTGCGTCGGTTTCAGAATGCGCCTg < 6:257809/149‑1 (MQ=255) | CAGCCAGGACCGACGCAATCGTGCGAAGTCAAAGGCCCAGGCCCAGGCTCCGGCCCCCGCCGCCGACACCGCAACGGTGCAGTCTACCGACTGAGCTCAGTCGCGTTCTGCCCCGTAGCCATGCTGGATGGCAGCCCATTGCCGGGGCTGCCGTCTGGCAGGCCCGGCAATGGACTAGGTTCGGTTTCGAGAGCCTGGTGCATGCAACGATGGTTTCAAGA‑CCCACCTGATCGGCAAGCCGTGGCAGATGATGCCGGGGCGTAATCACGTGCGTCGGTTTCAGAATGCGCCTG > NC_002947/2488051‑2488343 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |