Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 262,946 | G→T | 9.8% | intergenic (+181/‑304) | PP_0211 → / → gabD‑I | hypothetical protein/succinate‑semialdehyde dehydrogenase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 262,946 | 0 | G | T | 9.8% | 151.9 / 6.1 | 51 | intergenic (+181/‑304) | PP_0211/gabD‑I | hypothetical protein/succinate‑semialdehyde dehydrogenase |
Reads supporting (aligned to +/- strand): ref base G (25/21); new base T (2/3); total (27/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.56e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.21e-01 |
AAGCAGGACGACCGCCTAGCCAACGAACTGGCCGAGGGTAACCTGCTCTTTGGCGACACCCCGAGTGTGGGTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACATTTCTTTCAGTTCATTCGTCTAACCTGTACTGGCCCTATCGCTGGCAAGCCAGCTCCCACAAC > NC_002947/262799‑263086 | aaGCAGGACGACCGCCTAGCCAACGAACTGGCCGAGGGTAACCTGCTCTTTGGCGACACCCCGAGTGTGGGTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAgg < 7:144694/149‑1 (MQ=255) aaGCAGGACGACCGCCTAGCCAACGAACTGGCCGAGGGTAACCTGCTCTTTGGCGACACCCCGAGTGTGGGTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAgg < 1:233390/149‑1 (MQ=255) gCAGGACGACCGCCTAGCCAACGAACTGGCCGAGGGTAACCTGCTCTTTGGCGACACCCCGAGTGTGGGTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGc > 4:60580/1‑149 (MQ=255) cgacCGCCTAGCCAACGAACTGGCCGAGGGTAACCTGCTCTTTGGCGACACCCCGAGTGTGGGTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTgct > 8:82408/1‑148 (MQ=255) ccGCCTAGCCAACGAACTGGCCGAGGGTAACCTGCTCTTTGGCGACACCCCGAGTGTGGGTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTgctgagc < 3:60580/149‑1 (MQ=255) ccGCCTAGCCAACGAACTGGCCGAGGGTAACCTGCTCTTTGGCGACACCCCGAGTGTGGGTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGCCCTGATGCCGTgctgaaa < 3:51751/149‑3 (MQ=255) ccGCCTAGCCAACGAACTGGCCGAGGGGAACCTGCTCTTTGGCGACACCCCGAGTGTGGGTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGCCCTGATGCCGTgctgaaa < 5:277553/149‑3 (MQ=255) cGCCTAGCCAACGAACTGGCCGAGGGTAACCTGCTCTTTGGCGACACCCCGAGTGTGGGTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGCCCTGATGCCGTgctgaaac < 5:76230/149‑4 (MQ=255) ccTAGCCAACGAACTGGCCGAGGGTAACCTGCTCTTTGGCGACACCCCGAGTGTGGGTTCTGCGCGCAACTGGGCAACGTGCCACCGATTACTACGCCGATGACTACAGCATCATCGTTTCAGAAGGGCATCAGGGCGTgctgaggtga < 2:229213/149‑1 (MQ=255) ggTAACCTGCTCTTTGGCGACACCCCGAGTGTGGGTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTGAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCt < 2:265211/148‑1 (MQ=255) ccTGCTCTTTGGCGACACCCCGAGTGTGGGTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCa < 7:82408/149‑1 (MQ=255) cTGCTCTTTGGCGACACCCCGAGTGTGGGTACAGGGCGCAACTGTGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCa > 6:95003/1‑148 (MQ=255) cTGCTCTTTGGCGACACCCCGAGTGTGGGTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCAt < 6:10935/149‑1 (MQ=255) tttGGCGACACCCCGAGTGTGGGTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTc > 1:1326/1‑135 (MQ=255) tttGGCGACACCCCGAGTGTGGGTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTc < 2:1326/135‑1 (MQ=255) cGACACCCCGAGTGTGGGTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGa < 5:110345/149‑1 (MQ=255) acacCCCGAGTGTGGGTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAgg > 8:208553/1‑149 (MQ=255) cccccGAGTGTGGGTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAggg < 4:261241/147‑1 (MQ=255) ccccGAGTGTGGGTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGAAGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGcc > 3:199653/1‑149 (MQ=255) ccGAGTGTGGGTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGt > 5:9511/1‑149 (MQ=255) ccGAGTGTGGGTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGt > 6:179049/1‑149 (MQ=255) ccGAGTGTGGGTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGt < 2:62019/149‑1 (MQ=255) ggTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAgg < 2:60181/135‑1 (MQ=255) ggTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAgg > 1:60181/1‑135 (MQ=255) ggTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTcccc < 4:227211/148‑1 (MQ=255) gcgcAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACAt > 4:138212/1‑149 (MQ=255) aaCTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACAtttct > 4:124742/1‑149 (MQ=255) aaCTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACAtttct > 7:205315/1‑149 (MQ=255) aCTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACAtttctt > 2:234792/1‑149 (MQ=255) cTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACAtttcttt < 3:124742/149‑1 (MQ=255) aaagagCCACATATTACGATCCCGATGAAAACAGCATCATCAATTCAGCAAGGCAAAAGGCCGTCCTGACCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCATCCTGGAGGGCCGTCGGTCCACCCTTCACATTTCTATCAGtt > 8:180914/6‑148 (MQ=255) tGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACATTTCTTTCAGTTCATTc < 8:205315/149‑1 (MQ=255) ccACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACATTTCTTTCAGTTCATTCGt > 3:252057/1‑149 (MQ=255) ccACCGATTACGATGCCGATGACAACACCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTc > 8:211903/1‑102 (MQ=255) ccACCGATTACGATGCCGATGACAACACCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTc < 7:211903/102‑1 (MQ=255) cGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACATTTCTTTCAGTTCATTCGTCTaa < 5:179049/149‑1 (MQ=255) gATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACATTTCTTTCAGTTCATTCGTCTAAc < 3:138212/149‑1 (MQ=255) aTTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTTCCCCATTCACATTTCTTTCAGTTCATTCGTCTAAcc > 7:93520/1‑149 (MQ=255) gatgATGCTGTTGTCATCGGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACATTTCTTTCAGTTCATTCGTCTAACCTg > 5:8043/4‑149 (MQ=255) cGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACATTTCTTTCAGTTCATTCGTCTAACCTGTa > 5:70997/1‑149 (MQ=255) gCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACATTTCTTTCAGTTCATTCGTCTAACCTGTACTgg > 4:129115/1‑149 (MQ=255) ccGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACATTTCTTTCAGTTCATTCGTCTAACCTGTACTGGc < 6:70997/149‑1 (MQ=255) gATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACATTTCTTTCAGTTCATTCGTCTAACCTGTACTGGccc > 6:215281/1‑149 (MQ=255) gATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACATTTCTTTCAGTTCATTCGTCTAACCTGTACTGGccc < 5:95003/149‑1 (MQ=255) caGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACATCTCCAAGGCGTTCTGATTAATCCCCACCGGGAGGGCCGTCGGTCCCCCCTACACATTAATTTAAGTTCATTCGTGTAACATGTAGTGGCAATATCGCTg > 1:149859/1‑149 (MQ=255) catcatCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACATTTCTTTCAGTTCATTCGTCTAACCTGTACTGGCCCTATCGCTGGCa < 1:234792/149‑1 (MQ=255) tcagctCAGCACGCCCTGATGCCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACATTTCTTTCAGTTCATTCGTCTAACCTGTACTGGCCCTATCGCTGGCAAGCCa > 8:47486/6‑149 (MQ=255) gTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACATTTCTTTCAGTTCATTCGTCTAACCTGTACTGGCCCTATCGCTGGCAAGCCAGc > 6:162890/1‑149 (MQ=255) ctCAGCACGCCCTGATGCCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACATTTCTTTCAGTTCATTCGTCTAACCTGTACTGGCCCTATCGCTGGCACGCCAGCTc > 8:91351/2‑149 (MQ=255) tCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGATATGATTAATCACCTCCGGGAGGGCCGTCGGTCACCCCTTAACATTTCTTTCAGTTAATTCGTCTAACCTGTACTGGCCCTATAGCTGGCAAGCCAGCTcc > 7:168767/1‑149 (MQ=255) aGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACATTTCTTTCAGTTCATTCGTCTAACCTGTACTGGCCCTATCGCTGGCAAGCCAGCTCCca < 5:215281/149‑1 (MQ=255) cACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACATTTCTTTCAGTTCATTCGTCTAACCTGTACTGGCCCTATCGCTGGCAAGCCAGCTCCcac > 6:76517/1‑148 (MQ=255) cGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACATTTCTTTCAGTTCATTCGTCTAACCTGTACTGGCCCTATCGCTGGCAAGCCAGCTCCcacaac < 7:208553/149‑1 (MQ=255) | AAGCAGGACGACCGCCTAGCCAACGAACTGGCCGAGGGTAACCTGCTCTTTGGCGACACCCCGAGTGTGGGTACAGGGCGCAACTGGGCAACGTGCCACCGATTACGATGCCGATGACAACAGCATCATCGTTTCAGCACGGCATCAGGGCGTGCTGAGCTGATCGACCTCGCCAAGGCGTTCTGATTCATCCCCTCCGGGAGGGCCGTCGGTCCCCCCTTCACATTTCTTTCAGTTCATTCGTCTAACCTGTACTGGCCCTATCGCTGGCAAGCCAGCTCCCACAAC > NC_002947/262799‑263086 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |