Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,790,924 | G→A | 8.5% | L208L (CTC→CTT) | sstT ← | serine/threonine transporter SstT |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,790,924 | 0 | G | A | 8.5% | 134.1 / 2.5 | 47 | L208L (CTC→CTT) | sstT | serine/threonine transporter SstT |
Reads supporting (aligned to +/- strand): ref base G (24/19); new base A (2/2); total (26/21) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.66e-01 |
AGAATGCGGTAATGCCGCTTTCACGCAGGCACAGCAGCGTCAGCGGGTAGGGGTTGCGGCGGATCTTCCAGAACACGATCAGCGGGTTCATCACCAGCGCCACGAACAGCATGCAGCCGA‑TCAGTACCGCCAGCAGGTGCAGGTAGCCGAGCAGCGCGTCCAGGCCCGACTGGGCCAGGGTGGAACTGACCAGGCCAAAGATGCCCAGCGGGGCGAAGCGGATGACCACGCGTACGATCAGGGTTACACCATTGGACAGGTCTTCGACCACGGTACGG > NC_002947/2790776‑2791053 | agaaTGCGGTAATGCCGCTTTCACGCAGGCACAGCAGCGTCAGCGGGTAGGGGTTGCGGCGGATCTTCCAGAACACGATCAGCGGGTTCATCACCAGCGCCACGAACAGCATGCAGCCGA‑TCAGTACCGCCAGCAGGTGCAGGTAGCCg < 6:155089/149‑1 (MQ=255) ggTAATGCCGCTTTCACGCAGGCACAGCAGCGTCAGCGGGTAGGGGTTGCGGCGGATCTTCCAGAACACGATCAGCGGGTTCATCACCAGCGCCACGAACAGCATGCAGCCGA‑TCAGTACCGCCAGCAGGTGCAGGTAGCCGAGCAgcg > 8:147216/1‑149 (MQ=255) gCTTTCACGCAGGCACAGCAGCGTCAGCGGGTAGGGGTTGCGGCGGATCTTCCAGAACACGATCAGCGGGTTCATCACCAGCGCCACGAACAGCATGCAGCCGA‑TCAGTACCGCCAGCAGGTGCAGGTAGCCGAGCAGCGCGTCCAGGc > 8:126837/1‑149 (MQ=255) aCGCAGGCACAGCAGCGTCAGCGGGTAGGGGTTGCGGCGGATCTTCCAGAACACGATCAGCGGGTTCATCACCAGCGCCACGAACAGCATGCAGCCGA‑TCAGTACCGCCAGCAGGTGCAGGTAGCCGAGCAGCGCGTCCAGGCCCGACt > 7:223028/1‑149 (MQ=255) gCACAGCAGCGTCAGCGGGTAGGGGTTGCGGCGGATCTTCCAGAACACGATCAGCGGGTTCATCACCAGCGCCACGAACAGCATGCAGCCGA‑TCAGTACCGCCAGCAGGTGCAGGTAGCCGAGCAGCGCGTCCAGGCCCGACTGGGc > 1:126577/1‑147 (MQ=255) acaGCAGCGTCAGCGGGTAGGGGTTGCGGCGGATCTTCCAGAACACGATCAGCGGGTTCATCACCAGCGCCACGAACAGCATGCAGCCGA‑TCAGTACCGCCAGCAGGTGCAGGTAGCCGAGCAGCGCGTCCAGGCCCGACTGGGCCAgg > 7:624/1‑149 (MQ=255) cagcGTCAGCGGGTAGGGGTTGCGGCGGATCTTCCAGAACACGATCAGCGGGTTCATCACCAGCGCCACGAACAGCATGCAGCCGA‑TCAGTACCGCCAGCAGGTGCAGGTAGCCGAGCAGCGCGTCCAGGCCCGACTGGGCCAGGGTgg < 2:126577/149‑1 (MQ=255) gcGTCAGCGGGTAGGGGTTGCGGCGGATCTTCCAGAACACGATCAGCGGGTTCATCACCAGCGCCACGAACAGCATGCAGCCGA‑TCAGTACCGCCAGCAGGTGCAGGTAGCCGAGCAGCGCGTCCAGGCCCGACTGGGCCAGGGTGGaa < 7:126837/149‑1 (MQ=255) gTCAGCGGGTAGGGGTTGCGGCGGATCTTCCAGAACACGATCAGCGGGTTCATCACCAGCGCCACGAACAGCATGCAGCCGA‑TCAGTACCGCCAGCAGGTGCAGGTAGCCGAGCAGCGCGTCCAGGCCCGACTGGGCCAGGGTGGAACt < 1:181921/149‑1 (MQ=255) ttGCGGCGGATCTTCCAGAACACGATCAGCGGGTTCATCACCAGCGCCACGAACAGCATGCAGCCGA‑TCAGTACCGCCAGCAGGTGCAGGTAGCCGAGCAGCGCGTCCAGGCCCGACTGGGCCAGGGTGGAACTGACCAGGCCAAAGAt > 8:116908/1‑149 (MQ=255) tCTTCCAGAACACGATCAGCGGGTTCATCACCAGCGCCACGAACAGCATGCAGCCGA‑TCAGTACCGCCAGCAGGTGCAGGTAGCCGAGCAGCGCGTCCAGGCCCGACTGGGCCAGGGTGGa > 7:104069/1‑121 (MQ=255) tCTTCCAGAACACGATCAGCGGGTTCATCACCAGCGCCACGAACAGCATGCAGCCGA‑TCAGTACCGCCAGCAGGTGCAGGTAGCCGAGCAGCGCGTCCAGGCCCGACTGGGCCAGGGTGGa < 8:104069/121‑1 (MQ=255) ttCCAGAACACGATCAGCGGGTTCATCACCAGCGCCACGAACAGCATGCAGCCGA‑TCAGTACCGCCAGCAGGTGCAGGTAGCCGAGCAGCGCGTCCAGGCCCGACTGGGCCAGGGTGGAACTGACCAGGCCAAAGATGCCCAGCGGGGc > 5:95243/1‑149 (MQ=255) tCCAGAACACGATCAGCGGGTTCATCACCAGCGCCACGAACAGCATGCAGCCGA‑TCAGTACCGCCAGCAGGTGCAGGTAGCCGAGCAGCGCGTCCAGGCCCGACTGGGCCAGGGTGGAACTGACCAGGCCAAAGATGCCCAGCGGGGc > 1:15809/1‑148 (MQ=255) cAGAACACGATCAGCGGGTTCATCACCAGCGCCACGAACAGCATGCAGCCGA‑TCGGTACCGCCAGCAGGTGCAGGTAGCCGAGCAGCGCGTCCAGGCCCGACTGGGCCAGGGTGGAACTGACCAGGCCAAAGATGCCCAGCGGGGCg > 2:246850/1‑147 (MQ=255) cAGAACACGATCAGCCGGTTCATCACCAGCGCCACGAACAGCATGCAGCCGA‑TCGGTACCGCCAGCAGGTGCAGGTAGCCGAGCAGCGCGTCCAGGCCCGACTGGGCCAGGGTGGAACTGACCAGGCCAAAGATGCCCAGCGGGGCGaa < 1:246850/149‑1 (MQ=255) aaCACGATCAGCGGGTTCATCACCAGCGCCACGAACAGCATGCAGCCGA‑TCAGTACCGCCAGCAGGTGCAGGTAGCCGAGCAGCGCGTCCAGGCCCGACTGGGCCAGGGTgg < 2:47923/112‑1 (MQ=255) aaCACGATCAGCGGGTTCATCACCAGCGCCACGAACAGCATGCAGCCGA‑TCAGTACCGCCAGCAGGTGCAGGTAGCCGAGCAGCGCGTCCAGGCCCGACTGGGCCAGGGTgg > 1:47923/1‑112 (MQ=255) cacGATCAGCGGGTTCATCACCAGCGCCACGAACAGCATGCAGCCGA‑TCAGTACCGCCAGCAGGTGCAGGTAGCCGAGCAGCGCGTCCAGGCCCGACTGGGCCAGGGTGGAACTGACCAGGCCAAAGATGCCCAGCGGGGCGAAGCGGa < 2:15809/149‑1 (MQ=255) acGATCAGCGGGTTCATCACCAGCGCCACGAACAGCATGCAGCCGA‑TCAGTACCGCCAGCAGGTGCAGGTAGCCGAGCAGCGCGTCCAGGCCCGACTGGGCCAGGGTGGAACTGACCAGGCCAAAGATGCCCAGCGGGGCGAAGCGGAt < 7:116908/149‑1 (MQ=255) gATCAGCGGGTTCATCACCAGCGCCACGAACAGCATGCAGCCGA‑TCAGTACCGCCAGCAGGTGCAGGTAGCCGAGCAGCGCGTCCAGGCCCTACTGGGCCAGGGTGGAACTGACCAGGCCAAAGATGCCCAGCGGGGCGAAGCGGATGa < 8:223028/149‑1 (MQ=255) gATCAGCGGGTTCATCACCAGCGCCACGAACAGCATGCAGCCGA‑TCAGTACCGCCAGCAGGTGCAGGTAGCCGAGCAGCGCGTCCAGGCCCGACTGGGCCAGGGTGGAACTGACCAGGCCAAAg > 3:39913/1‑124 (MQ=255) gATCAGCGGGTTCATCACCAGCGCCACGAACAGCATGCAGCCGA‑TCAGTACCGCCAGCAGGTGCAGGTAGCCGAGCAGCGCGTCCAGGCCCGACTGGGCCAGGGTGGAACTGACCAGGCCAAAg < 4:39913/124‑1 (MQ=255) gATCAGCGGGTTCATCACCAGCGCCACGAACAGCATGCAGCCGA‑TCAGTACCGCCAGCAGGTGCAGGTAGCCGAGCAGCGCGTCCAGGCCCGACTGGGCCAGGGTGGAACTGACCAGGCCAAAGATGCCCAGCGGGGCGAAGCGGATGa > 2:48300/1‑149 (MQ=255) gATCAGCGGGTTCATCACCAGCGCCACGAACAGCATGCAGCCGA‑TCAGTACCGCCAGCAGGTGCAGGTAGCCGAGCAGCGCGTCCAGGCCCGACTGGGCCAGGGTGGAACTGACCAGGCCAAAGATGCCCAGCGGGGCGAAGCGGATGa > 2:44408/1‑149 (MQ=255) gATCAGCGGGTTCATCACCAGCGCCACGAACAGCATGCAGCCGA‑TCAGTACCGCCAGCAGGTGCAGGTAGCCGAGCAGCGCGTCCAGGCCCGACTGGGCCAGGGTGGAACTGACCAGGCCAAAGATGCCCAGCGGGGCGAAGCGGATGa > 4:127209/1‑149 (MQ=255) gATCAGCGGGTTCATCACCAGCGCCACGAACAGCATGCAGCCGA‑TCAGTACCGCCAGCAGGTGCAGGTAGCCGAGCAGCGCGTCCAGGCCCGACTGGGCCAGGGTGGAACTGACCAGGCCAAAGATGCCCAGCGGGGCGAAGCGGATGa > 1:38688/1‑149 (MQ=255) aTCAGCGGGTTCATCACCAGCGCCACGAACAGCATGCAGCCGA‑TCAGTACCGCCAGCAGGTGCAGGTAGCCGAGCAGCGCGTCCAGGCCCGACTGGGCCAGGGTGGAACTGACCAGGCCAAAGATGCCCAGCGGGGCGAAGCGGATGAc < 5:24588/149‑1 (MQ=255) aTCAGCGGGTTCATCACCAGCGCCACGAACAGCATGCAGCCGA‑TCAGTACCGCCAGCAGGTGCAGGTAGCCGAGCAGCGCGTCCAGGCCCGACTGGGCCAGGGTGGAACTGACCAGGCCAAAGATGCCCAGCGGGGCGAAGCGGATGAc < 2:38688/149‑1 (MQ=255) cGGGTTCATCACCAGCGCCACGAACAGCATGCAGCCGA‑TCAGTACCGCCAGCAGGTGCAGGTAGCCGAGCAGCGCGTCCAGGCCCGACTGGGCCAGGGTGGAACTGACCAGGCCAAAGATGCCCAGCGGGGCGAAGCGGATGACCAcgc < 8:624/149‑1 (MQ=255) atcaCCAGCGCCACGAACAGCATGCAGCCGA‑TCAGTACCGCCAGCAGGTGCAGGTAGCCGAGCAGCGCGTCCAGGCCCGACTGGGCCAGGGTGGAACTGACCAGGCCAAAGATGCCCAGCGGGGCGAAGCGGATGACCACGCGTACGAt < 3:127209/149‑1 (MQ=255) atcaCCAGCGCCACGAACAGCATGCAGCCGA‑TCAGTACCGCCAGCAGGTGCAGGTAGCCGAGCAGCGCGTCCAGGCCCGACTGGGCCACGCTGGAACTGACCACGCAAAAGATGCCCAGCGGGGCGAACCCGATGACCACGCGTACGaa > 3:23337/1‑148 (MQ=255) atcaCCAGCGCCACGAACAGCATGCAGCCGA‑TCAGTACCGCCAGCAGCTGCAGGTAGCCGAGCAGCGCGTCCAGGCCCGACTGGGCCAGGGTGGAACTGACCAGGCCAAAGATGCCCAGCGGGGCGAAGCGGATGACCACGCGTACGAt > 5:49819/1‑149 (MQ=255) aCCAGCGCCACGAACAGCATGCAGCCGA‑TCAGTACCGCCAGCAGGTGCAGGTAGCCGAGCAGCGCGTCCAGGCCCGACTGGGCCAGGGTGGAACTGACCAGGCCAAAGATGCCCAGCGGGGCGAAGCGGATGACCACGCGTACGATCa < 7:147216/148‑1 (MQ=255) cAGCGCCACGAACAGCATGCAGCCGAGTCAGTACCGCCAGCAGGTGCAGGTAGCCGAGCAGCGCGTCCAGGCCCGACTGGGCCAGGGTGGAACTGACCAGGCGAAAGATGCCCAGCGGGGCGAAGCGGATGACCACGCGTACGATCAgg > 1:7405/1‑149 (MQ=255) cAGCGCCACGAACAGCATGCAGCCGAGTCAGTACCGCCAGCAGGTGCAGGTAGCCGAGCAGCGCGTCCAGGCCCGACTGGGCCAGGGTGGAACTGACCAGGCCAAAGATGCCCAGCGGGGCGAAGCGGATGACCACGCGTACGATCAgg > 1:3159/1‑149 (MQ=255) cAGCGCCACGAACAGCATGCAGCCGA‑TCAGTACCGCCAGCAGGTGCAGGTAGCCGAGCAGCGCGGCCAGGCCCGACTGGGCCAGGGTGGAACTGACCAGGCCAAAGATGCCCAGCGGGGCGAAGCGGATGACCACGCGTACGATCAggg < 4:69489/149‑1 (MQ=255) cgcCACGAACAGCATGCAGCCGA‑TCAGTACCGCCAGCAGGTGCAGGTAGCCGAGCAGCGCGTCCAGGCCCGACTGGGCCAGGGTGGAACTGACCAGGCCAAAGATGCCCAGCGGGGCGAAGCGGATGACCACGCGTACGATCAGGGTTa > 7:234931/1‑149 (MQ=255) aCGAACAGCATGCAGCCGA‑TCAGTACCGCCAGCAGGTGCAGGTAGCCGAGCAGCGCGTCCAGGCCCGACTGGGCCAGGGTGGAACTGACCAGGCCAAAGATGCCCAGCGGGGCGAAGCGGATGACCACGCGTACGATCAgg > 3:40024/1‑141 (MQ=255) aCGAACAGCATGCAGCCGA‑TCAGTACCGCCAGCAGGTGCAGGTAGCCGAGCAGCGCGTCCAGGCCCGACTGGGCCAGGGTGGAACTGACCAGGCCAAAGATGCCCAGCGGGGCGAAGCGGATGACCACGCGTACGATCAgg < 4:40024/141‑1 (MQ=255) aTGCAGCCGA‑TCAGTACCGCCAGCAGGTGCAGGTAGCCGAGCAGCGCGTCCAGGCCCGACTGGGCCAGGGTGGAACTGACCAGGCCAAAGATGCCCAGCGGGGCGAAGCg < 5:55441/110‑1 (MQ=255) aTGCAGCCGA‑TCAGTACCGCCAGCAGGTGCAGGTAGCCGAGCAGCGCGTCCAGGCCCGACTGGGCCAGGGTGGAACTGACCAGGCCAAAGATGCCCAGCGGGGCGAAGCg > 6:55441/1‑110 (MQ=255) ccGA‑TCAGTACCGCCAGCAGGTGCAGGTAGCCGAGCAGCGCGTCCAGGCCCGACTGGGCCAGGGTGGAACTGACCAGGCCAAAGATGCCCAGCGGGGCGAAGCGGATGACCACGCGTACGATCAGGGTTACACCATTGGACAGGTCTTc < 1:48300/149‑1 (MQ=255) aCCGCCAACAGGTGCAGGTAGCCAAGCAGCGCGTCCAGGCCCGACTGGGCCAGGGTGGAACTGACCAGGCCAAAGATGCCCAGCGGGGCGAAGCGGATGa > 8:249221/1‑100 (MQ=255) aCCGCCAACAGGTGCAGGTAGCCAAGCAGCGCGTCCAGGCCCGACTGGGCCAGGGTGGAACTGACCAGGCCAAAGATGCCCAGCGGGGCGAAGCGGATGa < 7:249221/100‑1 (MQ=255) aCCGCCAACAGGTGCAGGTAGCCAAGCAGCGCGTCCAGGCCCGACTGGGCCAGGGTGGAACTGACCAGGCCAAAGATGCCCAGCGGGGCGAAGCGGATGa > 8:245606/1‑100 (MQ=255) aCCGCCAACAGGTGCAGGTAGCCAAGCAGCGCGTCCAGGCCCGACTGGGCCAGGGTGGAACTGACCAGGCCAAAGATGCCCAGCGGGGCGAAGCGGATGa < 7:245606/100‑1 (MQ=255) ccAGCAGGTGCAGGTAGCCGAGCAGCGCGTCCAGGCCCGACTGGGCCAGGGTGGAACTGACCAGGCCAAAGATGCCCAGCGGGGCGAAGCGGATGACCACGCGTACGATCAGGGTTACACCATTGGACAGGTCTTCGACCACGGTACgg > 6:233573/1‑149 (MQ=255) | AGAATGCGGTAATGCCGCTTTCACGCAGGCACAGCAGCGTCAGCGGGTAGGGGTTGCGGCGGATCTTCCAGAACACGATCAGCGGGTTCATCACCAGCGCCACGAACAGCATGCAGCCGA‑TCAGTACCGCCAGCAGGTGCAGGTAGCCGAGCAGCGCGTCCAGGCCCGACTGGGCCAGGGTGGAACTGACCAGGCCAAAGATGCCCAGCGGGGCGAAGCGGATGACCACGCGTACGATCAGGGTTACACCATTGGACAGGTCTTCGACCACGGTACGG > NC_002947/2790776‑2791053 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |