Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 272,008 | A→T | 12.1% | intergenic (+13/+16) | PP_0218 → / ← metP | sensory box protein/L,D‑methionine D‑methionine ABC transporter permease |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 272,008 | 0 | A | T | 12.1% | 102.2 / 4.4 | 40 | intergenic (+13/+16) | PP_0218/metP | sensory box protein/L,D‑methionine D‑methionine ABC transporter permease |
Reads supporting (aligned to +/- strand): ref base A (17/18); new base T (3/2); total (20/20) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01 |
TGGGGATGCAGGTGCATGCCGAGGGCATCGAGCAGGCGGAACAGGCCAGCTTCCTGCTGCAGGAGGAGTGCCAGTTGGGGCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGCCACTAACGCTACCAGCATGGCGATCACGGTCAGCATGATCTGGCTGTCGAAACGCTGGTAGCCATACCGATAGGC > NC_002947/271862‑272152 | tGGGGATGCAGGTGCATGCCGAGGGCATCGAGCAGGCGGAACAGGCCAGCTTCCTGCTGCAGGAGGAGTGCCAGTTGGGGCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAag < 5:232432/149‑1 (MQ=255) tGGGGATGCAGGTGCATGCCGAGGGCATCGAGCAGGCGGAACAGGCCAGCTTCCTGCTGCAGGAGGAGTGCCAGTTGGGGCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAag > 7:210403/1‑149 (MQ=255) gATGCAGGTGCATGCCGAGGGCATCGAGCAGGCGGAACAGGCCAGCTTCCTGCTGCAGGAGGAGTGCCAGTTGGGGCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAagcagc < 7:220569/149‑1 (MQ=255) cAGGTGCATGCCGAGGGCATCGAGCAGGCGGAACAGGCCAGCTTCCTGCTGCAGGAGGAGTGCCAGTTGGGGCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCTTTGCAGcccgg < 7:129078/149‑3 (MQ=255) aGGTGCATGCCGAGGGCATCGAGCAGGCGGAACAGGCCAGCTTCCTGCTGCAGGAGGAGTGCCAGTTGGGGCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCa < 4:24171/149‑1 (MQ=255) gCCGAGGGCATCGAGCAGGCGGAACAGGCCAGCTTCCTGCTGCAGGAGGAGTGCCAGTTGGGGCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGATGGGATTTAGACCGGGCTGCAAAGCAGCCCTCAGATTTCa > 3:200559/1‑148 (MQ=255) cGAGGGCATCGAGCAGGCGGAACAGGCCAGCTTCCTGCTGCAGGAGGAGTGCCAGTTGGGGCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACg > 6:275637/1‑149 (MQ=255) cGAGGGCATCGAGCAGGCGGAACAGGCCAGCTTCCTGCTGCAGGAGGAGTGCCAGTTGGGGCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACg > 4:174249/1‑149 (MQ=255) aGGGCATCGAGCAGGCGGAACAGGCCAGCTTCCTGCTGCAGGAGGAGTGCCAGTTGGGGCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCt < 5:275637/149‑1 (MQ=255) cATCGAGCAGGCGGAACAGGCCAGCTTCCTGCTGCAGGAGGAGTGCCAGTTGGGGCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGtt < 3:174249/149‑1 (MQ=255) aGCAGGCGGAACAGGCCAGCTTCCTGCTGCAGGAGCAGTGCCAGTTGGGGCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAAc < 2:156461/149‑1 (MQ=255) ccAGCTTCCTGCTGCAGGAGGAGTGCCAGTTGGGGCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGcc > 2:268915/1‑109 (MQ=255) gctgcAGGAGGAGTGCCAGTTGGGGCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAg > 6:202374/1‑149 (MQ=255) ctgcAGGTGGAGTGCCAGTTGGGGCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCtt < 6:184427/127‑1 (MQ=255) ctgcAGGTGGAGTGCCAGTTGGGGCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCtt > 5:184427/1‑127 (MQ=255) cAGGAGGAGTGCCAGTTGGGGCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCt < 2:250099/147‑1 (MQ=255) cAGGAGGAGTGCCAGTTGGGGCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTgg < 3:189114/149‑1 (MQ=255) ggaggaGTGCCAGTTGGGGCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGAt > 2:611/1‑149 (MQ=255) gggCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGCCACTAACGc < 1:611/148‑1 (MQ=255) gggCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGCCACTAACGCt < 8:210403/149‑1 (MQ=255) ggggTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCTGCCCAGCTGGATCAACGCCACTAACGCTACCAg < 1:35847/149‑1 (MQ=255) ggggTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGc > 5:230947/1‑134 (MQ=255) ggggTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGc < 6:230947/134‑1 (MQ=255) tGGTTCGGGCGGCCAGTCCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTCCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGCCACTAACGCAACCAGCATGGc > 2:17144/1‑148 (MQ=255) cggcCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGCCACTAACGCTACCAGCATGGCGATCACGGt > 1:71992/1‑148 (MQ=255) cAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGCCACTAACGCTACCAGCATGGCGATCACGGTc > 6:129572/1‑145 (MQ=255) cAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGCCACTAACGCTACCAGCATGGCGATCACGGTc < 5:129572/145‑1 (MQ=255) gATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGCCACTAAc < 2:174689/107‑1 (MQ=255) gATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGCCACTAAc > 1:174689/1‑107 (MQ=255) gATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGCCACTAACGCTACCACCATGGCGATCACGGTCAGCATGATCTGGCTGTc > 1:6981/1‑148 (MQ=255) tCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGCCACTAACGCTACCAGCATGGCGATCACGGTCa > 1:139164/1‑127 (MQ=255) tCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGCCACTAACGCTACCAGCATGGCGATCACGGTCa < 2:139164/127‑1 (MQ=255) atctgagggCTGCTTTGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGCCACTAACGCTACCAGCATGGCGATCACGGTCAGCATGATCTGGCTGTCGAAACGCTGGTAGCCa > 4:83911/7‑148 (MQ=255) agaCCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGCCACTAACGCTACCAGCATGGCGATCACGGTCAGCATGATCTGGCTGTCGAAACGCTGGTAGCCATa > 3:70141/1‑149 (MQ=255) gaCCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAAGCCTTCGCCAGGCGGTCCCCGCCGAGCTGGATCAACGCCACTAACGCTTCCAGCATGGCGATCACGGTCAGCATGATCTGGCTGTCGAAACGCTGGTAGCCATAc < 1:17144/149‑1 (MQ=255) gaCCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGCCACTAACGCTACCAGCATGGCGATCACGGTCAGCATGATCTGGCTGTCGAAACGCTGGTAGCCATAc < 5:202374/149‑1 (MQ=255) gagggCTGCTTTGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGCCACTAACGCTACCAGCATGGCGATCACGGTCAGCATGATCTGGCTGTCGAAACGCTGGTAGCCATAcc > 6:107436/3‑148 (MQ=255) agggCTGCTTTGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGCCACTAACGCTACCAGCATGGCGATCACGGTCAGCATGATCTGGCTGTCGAAACGCTGGTAGCCATACCGa > 6:189828/2‑149 (MQ=255) agggCTGCTTTGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGCCACTAACGCTACCAGCATGGCGATCACGGTCAGCATGATCTGGCTGTCGAAACGCTGGTAGCCATACCGa < 5:189828/148‑1 (MQ=255) tGCAAAGCAGCCCTCAGATTTCAAAGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGCCACTAACGCTACCAGCATGGCGATCACGGTCAGCATGATCTGGCTGTCGAAACGCTGGTATCCATACCGATAGGc > 4:165903/1‑149 (MQ=255) aaaGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGCCAc > 5:58986/1‑74 (MQ=255) aaaGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGCCAc < 6:58986/74‑1 (MQ=255) | TGGGGATGCAGGTGCATGCCGAGGGCATCGAGCAGGCGGAACAGGCCAGCTTCCTGCTGCAGGAGGAGTGCCAGTTGGGGCAGGGGTACTGGTTCGGGCGGCCAGTGCCGGCTGAGGATCTTCGCTGGGATTGAGACCGGGCTGCAAAGCAGCCCTCAGATTTCAACGCTTGTTCAAACCCTTCGCCAGGCGGTCCCCGCCCAGCTGGATCAACGCCACTAACGCTACCAGCATGGCGATCACGGTCAGCATGATCTGGCTGTCGAAACGCTGGTAGCCATACCGATAGGC > NC_002947/271862‑272152 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |