| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,831,538 | T→C | 14.4% | intergenic (‑8/+131) | PP_2484 ← / ← PP_2485 | ArsR family transcriptional regulator/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,831,538 | 0 | T | C | 14.4% | 64.5 / 3.4 | 30 | intergenic (‑8/+131) | PP_2484/PP_2485 | ArsR family transcriptional regulator/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (12/13); new base C (2/2); total (14/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.72e-01 | |||||||||||
ATACTGACGCACACACCTACCGTTTCTGGGTCGACCTCCTGCTCAGGAAAGACTGTCCTGGGATCCTTGAGCCAATTGAGGATGGCAAGGCGCATCGGGTTCGCCAATGCTTTCAGGGCTTCGTTGACGTCAATAGTCATGAATTTTTTGATACCTGTTTTTTACGATATCTAGATATCTTCCTGGTTCGCGCATCAAATTGGAAGGCTTCGCCGTGATCTCTGCGCGCCTGCCCGTCGCAATGACTGGCTGGTCTGGACTGGAATCCTATTGTCCTGTCAGGTAGAACTATCGG > NC_002947/2831391‑2831685 | atACTTACGCACTCACCTACCGTTTCTGGGTCGACCTCATGCTCAGGAAAGACTGTCCTGGTATCCTTGAGCAAATTTAGGATGGCAAGGCGCATCTGTTTCGCCAATGCTTTCAGGGCTTAGTTGAAGTCAATAGTCATGAAttttt < 3:233042/148‑1 (MQ=255) tGACGCACACACCTACCGTTTCTGGGTCGACCTCCTGCTCAGGAAAGACTGTCCTGGGATCCTTGAGCCAATTGAGGATGGCAAGGCGCATCGGGTTCGCCAATGCTTTCAGGGCTTCGTTGACGTCAATAGTCATGAATTTTCTGATa > 2:65946/1‑149 (MQ=255) tGACGCACACACCTACCGTTTCTGGGTCGACCTCCTGCTCAGGAAAGACTGTCCTGGGATCCTTGAGCCAATTGAGGATGGCAAGGCGCATCGGGTTCGCCAATGCTTTCAGGGCTTCGTTGACGTCAATAGTCATGAATTTTCTGATa > 2:69408/1‑149 (MQ=255) ccTACCGTTTCTGGGTCGACCTCCTGCTCAGGAAAGACTGTCCTGGGATCCTTGAGCCAATTGAGGATGGCAAGGCGCATCGGGTTCGCCAATGCTTTCAGGGCTTCGTTGACGTCAATAGTCATGAATTTTTTGATACCTGTTTTTTa < 5:45915/149‑1 (MQ=255) gTTTCTGGGTCGACCTCCTGCTCAGGAAAGACTGTCCTGGGATCCTTGAGCCAATTGAGGATGGCAAGGCGCATCGGGTTCGCCAATGCTTTCAGGGCTTCGTTGACGTCAATAGTCATGAATTTTTTGATACCTGTTTTTTACGa > 3:2496/1‑146 (MQ=255) gTTTCTGGGTCGACCTCCTGCTCAGGAAAGACTGTCCTGGGATCCTTGAGCCAATTGAGGATGGCAAGGCGCATCGGGTTCGCCAATGCTTTCAGGGCTTCGTTGACGTCAATAGTCATGAATTTTTTGATACCTGTTTTTTACGa < 4:2496/146‑1 (MQ=255) tCTGGGTCGACCTCCTGCTCAGGAAAGACTGTCCTGGGATCCTTGAGCCAATTGAGGATGGCAAGGCGCATCGGGTTCGCCAATGCTTTCAGGGCTTCGTTGACGTCAATAGTCATGAATTTTTTGATACCTGTTTTTTACGATATCt < 2:182550/148‑1 (MQ=255) tGGGTCGACCTCCTGCTCAGGAAAGACTGTCCTTGGATCCTTGAGCCAATTGAGGATGGCAAGGCGCATCGGGTTCGCCAATGCTTTCAGGGCTTCGTTGACGTCAATAGTCATGAATTTTTTGATAc < 5:177945/128‑1 (MQ=255) tGGGTCGACCTCCTGCTCAGGAAAGACTGTCCTGGGATCCTTGAGCCAATTGAGGATGGCAAGGCGCATCGGGTTCGCCAATGCTTTCAGGGCTTCGTTGACGTCAATAGTCATGAATTTTTTGATAc > 6:177945/1‑128 (MQ=255) tCGACCTCCTGCTCAGGAAAGACTGTCCTGGGATCCTTGAGCCAATTGAGGATGGCAAGGCGCATCGGGTTCGCCAATGCTTTCAGGGCTTCGTTGACGTCAATAGTCATGAATTTTTTGATACCTGTTTTTTACGATATCTAGATATc > 6:220210/1‑149 (MQ=255) cctcctGCTCAGGAAAGACTGTCCTGGGATCCTTGAGCCAATTGAGGATGGCAAGGCGCATCGGGTTCGCCAATGCTTTCAGGGCTTCGTTGACGTCAATAGTCATGAATTTTTTGATACCTGTTTTTTACGATATCTAGATATCTTcc > 5:198168/1‑149 (MQ=255) cTCAGGAAAGACTGTCCTTGGATCCTTGAGCCAATTCAGGATGGCAAGGCGCATCGGGTTCGCCAATGCTTTCAGGGCTTCGTTGACGTCAATAGTCATGAAATTTTTGATACCTGTTTTTTACGATATCTAGATATCTTCCTGGTTc < 4:61227/148‑1 (MQ=255) aGGAAAGACTGTCCTGGGATCCTTGAGCCAATTGAGGATGGCAAGGCGCATCGGGTTCGCCAATGCTTTCAGGGCTTCGTTGACGTCAATAGTCATGAATTTTTTGATACCTGTTTTTTACGATATCTAGATATc > 3:113843/1‑135 (MQ=255) aGGAAAGACTGTCCTGGGATCCTTGAGCCAATTGAGGATGGCAAGGCGCATCGGGTTCGCCAATGCTTTCAGGGCTTCGTTGACGTCAATAGTCATGAATTTTTTGATACCTGTTTTTTACGATATCTAGATATc < 4:113843/135‑1 (MQ=255) aGGAAAGACTGTCCTGGGATCCTTGAGCCAATTGAGGATGGCAAGGAGCATCGGGTTCGCCAATGCTTTCAGGGCTTCGTTGACGTCAATAGTCATGAATTTTTTGATACCTGTTTTTTAGGATATCTAGATATCTTCATGGTTcgcg > 8:174696/1‑148 (MQ=255) tgcTGGTATCCTTGAGGCTATTGAGGATGGCAAGGCGGATCGTGTTCGCCAATGCTTTCTGGGCTTCGTTGACGTCAATAGTCTTTAATTTTTTGATACCTGTTTTTTACGATATCTAGATATCTTCCTGGTTCGCGCATCAAAtt < 8:70374/144‑1 (MQ=255) tCCTGGGATCCTTGAGCCAATTGAGGATGGCAAGGCGCATCGGGTTCGCCAATGCTTTCAGGGCTTCGTTGACGTCAATAGTCATGAATTTTTTGATACCTGTTTTTTACGATATCTAGATATCTTCCTGGTTCGCGCATCAAATTg < 3:119855/147‑1 (MQ=255) cTGGGATCCTTGAGCCAATTGAGGATGGCAAGGCGCATCGGGTTCGCAAATGCTTTCAGGGCTTCGTTGACGTCAATAGTCATGAATTTTTTGATACCTGTTTTTTACGATATCTAGATATCTTCCTGGTTCGCGCATCAAATTGTAAg < 5:220210/149‑1 (MQ=255) cAATTGAGGATGGCAAGGCGCATCGGGTTCGCCAATGCTTTCAGGGCTTCGTTGACGTCAATAGTCATGAATTTTTTGATACCTGTTTTTTACGATATCTAGATATCTTCCTGGTTCGCGCATCAAATTGGAAGGCTTCGCCGTGAtc > 7:73764/1‑148 (MQ=255) ggTTCGCCAATGCTTTCAGGGCTTCGTTGACGTCAATAGTCATGAATTTTTTGATACCTGTTTTTTACGATATCTAGATATCTTCCTGGTTCGCGCATCAAATTGGAAGGCTTCGCCGTGATCTCTGCGCGCCTGCCCGTCGCAATGAc > 7:78121/1‑149 (MQ=255) ccAATGCTTTCAGGGCTTCGTTGACGTCAATAGTCATGAATTTTCTGATACCTGTTTTTTACGATATCTAGATATCTTCCTGGTTCGCGCATCAAATTGGAAGGCTTCGCCGTGATCTCTGCGCGCCTGCCCGTCGCAATGActggctg < 1:69408/149‑1 (MQ=255) ccAATGCTTTCAGGGCTTCGTTGACGTCAATAGTCATGAATTTTCTGATACCTGTTTTTTACGATATCTAGATATCTTCCTGGTTCGCGCATCAAATTGGAAGGCTTCGCCGTGATCTCTGCGCGCCTGCCCGTCGCAATGActggctg < 1:65946/149‑1 (MQ=255) ttGACGTCAATAGTCATGAATTTTTTTATACCTGTTTTTTACGATATCTAGATATCTTCCTGGTTCGCGCATCAAATTGGAAGGCTTCGCCGTGATCTCTGCGCGCCTGCCCGTCGCAATGACTGGCTGGTctgga < 7:7184/136‑1 (MQ=255) ttGACGTCAATAGTCATGAATTTTTTGATACCTGTTTTTTACGATATCTAGATATCTTCCTGGTTCGCGCATCAAATTGGAAGGCTTCGCCGTGATCTCTGCGCGCCTGCCCGTCGCAATGACTGGCTGGTctgga > 8:7184/1‑136 (MQ=255) ttGACGTCAATAGTCATGAATTTTTTGATACCTGTTGTTTACGATATCTAGATATCTTCCTGGTTCGCGCATCAAATTGGAAGGCTTCGCCGTGATCTCTGCGCGCCTGCCCGTCGCAATGACTGGCTGGTCTGGACTGGAATCCTAtt < 6:198168/149‑1 (MQ=255) tAGTCATGAATTTTATGATACCTGTTTTTTACGATATCTAGATATCTTCCTGGTTCGCGCATCAAATTGGAAGGCTTCGCCGTGATCTCTGCGCGCCTGCCCGTCGCAATGACTGGCTGGTCTGGACTGGAATCCTATTGTCCTGTCac < 7:174696/149‑2 (MQ=255) aTGAATTTTTTGATACCTGTTTTTTACGATATCTAGATATCTTCCTGGTTCGCGCATCAAATTGGAAGGCTTCGCCGTGATCTCTGCGCGCCTGCCCGTCGCAATGACTGGCTGGTCTGGACTGGAATCCTa < 7:173342/132‑1 (MQ=255) aTGAATTTTTTGATACCTGTTTTTTACGATATCTAGATATCTTCCTGGTTCGCGCATCAAATTGGAAGGCTTCGCCGTGATCTCTGCGCGCCTGCCCGTCGCAATGACTGGCTGGTCTGGACTGGAATCCTa > 8:173342/1‑132 (MQ=255) tGAATTTTTTGATACCTGTTTTTTACGATATCTAGATATCTTCCTGGTTCGCGCATCAAATTGGAAGGCTTCGCCGTGATCTCTGCGCGCCTGCCCGTCGCAATGACTGGCTGGTCTGGACTGGAATCCTATTGTCCTGTCAGGTAGaa > 8:135266/1‑149 (MQ=255) aTTTTTTGATACCTGTTTTTTACGATATCTAGATATCTTCCTGGTTCGCGCATCAAATTGGAAGGCTTCGCCGTGATCTCTGCGCGCCTGCCCGTCGCAATGACTGGCTGGTct > 6:201116/1‑114 (MQ=255) aTTTTTTGATACCTGTTTTTTACGATATCTAGATATCTTCCTGGTTCGCGCATCAAATTGGAAGGCTTCGCCGTGATCTCTGCGCGCCTGCCCGTCGCAATGACTGGCTGGTct < 5:201116/114‑1 (MQ=255) tttttGATACCTGTTTTTTACGATATCTAGATATCTTCCTGGTTCGCGCATCAAATTGGAAGGCTTCGCCGTGATCTCTGCGCGCCTGCCCGTCGCAATGACTGGCTGGTCTGGACTGGAATCCTATTGTCCTGTCAGGTAGAACTATc > 7:94617/1‑149 (MQ=255) tttGATACCTGTTTTTTACGATATCTAGATATCTTCCTGGTTCGCGCATCAAATTGGAAGGCTTCGCCGTGATCTCTGCGCGCCTGCCCGTCGCAATGACTGGCTGGTCTGGACTGGAATCCTATTGTCCTGTCAGGTAGAACTATCgg > 4:190065/1‑149 (MQ=255) | ATACTGACGCACACACCTACCGTTTCTGGGTCGACCTCCTGCTCAGGAAAGACTGTCCTGGGATCCTTGAGCCAATTGAGGATGGCAAGGCGCATCGGGTTCGCCAATGCTTTCAGGGCTTCGTTGACGTCAATAGTCATGAATTTTTTGATACCTGTTTTTTACGATATCTAGATATCTTCCTGGTTCGCGCATCAAATTGGAAGGCTTCGCCGTGATCTCTGCGCGCCTGCCCGTCGCAATGACTGGCTGGTCTGGACTGGAATCCTATTGTCCTGTCAGGTAGAACTATCGG > NC_002947/2831391‑2831685 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |