Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,038,493 | C→T | 8.7% | F255F (TTC→TTT) | gbd → | 4‑hydroxybutyrate dehydrogenase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,038,493 | 0 | C | T | 8.7% | 128.5 / 3.2 | 46 | F255F (TTC→TTT) | gbd | 4‑hydroxybutyrate dehydrogenase |
Reads supporting (aligned to +/- strand): ref base C (20/22); new base T (2/2); total (22/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.84e-01 |
CCTGCGTTCAACCCGCCTGCCGACGGCATTGCCCTGGACGGCCTGTGGAGGGCCTGGCGCTTCATCGAACGAGCCACCCGCGCGCCGGGCAACCTGGACGGGCGCATCAACATGATGAGCGCATCGCTGCAAGGTGCGCTGGCCTTCCAGAAAGGCCTGGGCTGCGTGCACAGCCTTAGCCACGCGCTGGGCGGGATCAACCCGCGCCTGCACCACGGCACCCTCAATGCGATCTTCCTGCCTGCCGTCATCCGCTTCAACCGCACGGCCGAAACGGTGGTGAATGAACAC > NC_002947/3038347‑3038637 | ccTGCGTTCAACCCGCCTGCCGACGGCATTGCCCTGGACGGCCTGTGGAGGGCCTGGCGCTTCATCGAACGAGCCACCCGCGCGCCGGGCAACCTGGACGGGCGCATCAACATGATGAGCGCATCGCTGCAAGGTGCGCTGGCCTTCCa < 6:198307/149‑1 (MQ=255) aaCCCGCCTGCCGACGGCATTGCCCTGGACGGCCTGTGGAGGGCCTGGCGCTTCATCGAACGAGCCACCCGCGCGCCGGGCAACCTGGACGGGCGCATCAACATGATGAGCGCATCGCTGCAAGGTGCGCTGGCCTTCCAGAAAGGc > 5:12510/1‑147 (MQ=255) aaCCCGCCTGCCGACGGCATTGCCCTGGACGGCCTGTGGAGGGCCTGGCGCTTCATCGAACGAGCCACCCGCGCGCCGGGCAACCTGGACGGGCGCATCAACATGATGAGCGCATCGCTGCAAGGTGCGCTGGCCTTCCAGAAAGGc < 6:12510/147‑1 (MQ=255) cccGCCTGCCGACGGCATTGCCCTGGACGGCCTGTGGAGGGCCTGGCGCTTCATCGAACGAGCCACCCGCGCGCCGGGCAACCTGGACGGGCGCATCAACATGATGAGCGCATCGCTGCAAGGTGCGCTGGCCTTTCTGGAAGGccagc < 3:214945/149‑4 (MQ=255) cTGCCGACGGCATTGCCCTGGACGGCCTGTGGAGGGCCTGGCGCTTCATCGAACGAGCCACCCGCGCGCCGGGCAACCTGGACGGGCGCATCAACATGATGAGCGCATCGCTGCAAGGTGCGCTGGCCTTCCAGAAAGGCCTGGGCTGc < 1:253680/149‑1 (MQ=255) ccGACGGCATTGCCCTGGACGGCCTGTGGAGGGCCTGGCGCTTCATCGAACGAGCCCCCCGCGCGCCGGGCAACCTGGACGGGCGCATCAACATGATGAGCGCATCGCTGCAAGGTGCGCTGGCCTTCCAGAAAGGCCTGGGCTGCGTg > 5:224884/1‑149 (MQ=255) gACGGCATTGCCCTGGACGGCCTGTGGAGGGCCTGGCGCTTCATCGAACGAGCCACCCGCGCGCCGGGCAACCTGGACGGGCGCATCAACATGATGAGCGCATCGCTGCAAGGTGCGCTGGCCTTTCTGGAAGGccagc < 1:181436/139‑4 (MQ=255) gACGGCATTGCCCTGGACGGCCTGTGGAGGGCCTGGCGCTTCATCGAACGAGCCACCCGCGCGCCGGGCAACCTGGACGGGCGCATCAACATGATGAGCGCATCGCTGCAAGGTGCGCTGGCCTTTCTGGAAGGccagc > 2:181436/1‑136 (MQ=255) aCGGCATTGCCCTGGACGGCCTGTGGAGGGCCTGGCGCTTCATCGAACGAGCCACCCGCGCGCCGGGCAACCTGGACGGGCGCATCAACATGATGAGCGCATCGCTGCAAGGTGCGCTGGCCTTCCAGAAAGGCCTGGGCTGCGTGca > 6:210509/1‑148 (MQ=255) cATTGCCCTGGACGGCCTGTGGAGGGTCTGGCGCTTCATCGAACGAGCCACCCGCGCGCCGGGCAACCTGGACGGGCGCATCAACATGATGAGCGCATCGCTGCAAGGTGCGCTGGCCTTCCAGAAAGGCCTGGGCTGCGTGCACAGcc > 1:6578/1‑149 (MQ=255) aTTGCCCTGGACGGCCTGTGGAGGGCCTGGCGCTTCATCGAACGAGCCACCCGCGCGCCGGGCAACCTGGACGGGCGCATCAACATGATGAGCGCATCGCTGCAAGGTGCGCTGGCCTTCCAGAAAGGCCTGGGCTGCGTGCACAGCCt > 3:264648/1‑149 (MQ=255) aTTGCCCTGGACGGCCTGTGGAGGGCCTGGCGCTTCATCGAACGAGCCACCCGCGCGCCGGGCAACCTGGACGGGCGCATCAACATGATGAGCGCATCGCTGCAAGGTGCGCTGGCCTTCCAGAAAGGCCTGGGCTGCGTGCACAGCCt < 5:137615/149‑1 (MQ=255) ggCCTGTGGAGGGCCTGGCGCTTCATCGAACGAGCCACCCGCGCGCCGGGCAACCTGGACGGGCGCATCAACATGATGAGCGCATCGCTGCAAGGTGCGCTGGCCTTCCAGAAAGGCCTGGGCTGCGTg < 3:89863/129‑1 (MQ=255) ggCCTGTGGAGGGCCTGGCGCTTCATCGAACGAGCCACCCGCGCGCCGGGCAACCTGGACGGGCGCATCAACATGATGAGCGCATCGCTGCAAGGTGCGCTGGCCTTCCAGAAAGGCCTGGGCTGCGTg > 4:89863/1‑129 (MQ=255) ggAGGGCCTGGCGCGTCATCGAACGCGCCACCCGCGCGCCGGGCAACCTGGACGGGCGCATCAACATGATGAGCGCATCGCCGCAAGGTGCGCTGGCCTTCCAGAAAGGCCTGGGCTGCGTGCACAGCCTTAGCCACGCGCTGGGCggg < 3:164094/149‑1 (MQ=255) tGGCGCTTCATCGAACGAGCCACCCGCGCGCCGGGCAACCTGGACGGGCGCATCAACATGATGAGCGCATCGCTGCAAGGTGCGCTGGCCTTCCAGAAAGGCCTGGGCTGCGTGCACAGCCTTAGCCACGCGCTGGGCGGGATCAAcca > 8:230667/1‑148 (MQ=255) gcTTCATCGAACGAGCCACCCGCGCGCCGGGCAACCTGGACGGGCGCATCAACATGATGAGCGCATCGCTGCAAGGTGCGCTGGCCTTCCAGAAAGGCCTGGGCTGCGTGCACAGCCTTAGCCACGCGCTGGGCGGGATCAACCCgcgc > 7:198786/1‑149 (MQ=255) cATCGAACGAGCCACCCGCGCGCCGGGCAACCTGGACGGGCGCATCAACATGATGAGCGCATCGCTGCAAGGTGCGCTGGCCTTCCAGAAAGGCCTGGGCTGCGTGCACAGCCTTAGCCACGCGCTGGGCGGGATCAACCCGCGCCTg < 4:264648/148‑1 (MQ=255) aTCGAACGAGCCACCCGCGCGCCGGGCAACCTGGACGGGCGCATCAACATGATGAGCGCATCGCTGCAAGGTGCGCTGGCCTTCCAGAAAGGCCTGGGCTGCGTGCACAGCCTTAGCCACGCGCTGGGCGGGATCAACCCGCGCCTGca > 2:217394/1‑149 (MQ=255) aaCGAGCCACCCGCGCGCCGGGCAACCTGGACGGGCGCATCAACATGATGAGCGCATCGCTGCAAGGTGCGCTGGCCTTCCAGAAAGGCCTGGGCTGCGTGCACAGCCTTAGCCACGCGCTGGGCGGGATCAACCCGCGCCTGcaccac > 5:46530/1‑149 (MQ=255) cGAGCCACCCGCGCGCCGGGCAACCTGGACGGGCGCATCAACATGATGAGCGCATCGCTGCAAGGTGCGCTGGCCTTCCAGAAAGGCCTGGGCTGCGTGCACAGCCTTAGCCACGCGCTGGGCGGGATCAACCCGCGCCTGCACCACgg < 6:46530/149‑1 (MQ=255) aCCCGCGCGCCGGGCAACCTGGACGGGCGCATCAACATGATGAGCGCATCGCTGCAAGGTGCGCTGGCCTTCCAGAAAGGCCTGGGCTGCGTGCACAGCCTTAGCCACGCGCTGGGCGGGATCAACCCGCGCCTGCACCACGGCACCCt > 7:234408/1‑149 (MQ=255) cgcgcgCCGGGCAACCTGGACGGGCGCATCAACATGATGAGCGCATCGCTGCAAGGTGCGCTGGCCTTCCAGAAAGGCCTGGGCTGCGTGCACAGCCTTAGCCACGCGCTGGGCGGGATCAACCCGCGCCTGCACCACGGCACCCTCaa > 5:89544/1‑149 (MQ=255) cAACCTGGACGGGCGCATCAACATTATGAGCGCATCGCTGCAAGGTGCTCTGGCCTTCCAGAAAGGACTGGGCTGCGTGCACAGCCTTAGCCACTCGCTGGGCGGGCTCACCACGCGCCTGCACACCGGCACCCt > 8:128262/1‑135 (MQ=255) cAACCTGGACGGGCGCATCAACATGATGAGCGCATCGCTGCAAGGTGCGCTGGCCTTCCAGAACGGCCTGGGCTGCGTGCACAGCCTTAGCCACGCGCTGGGCGGGATCAACCCGCGCCTGCACCACGGCACCCt < 7:128262/135‑1 (MQ=255) cAACCTGGACGGGCGCATCAACATGATGAGCGCATCGCTGCAAGGTGCGCTGGCCTTCCAGAAAGGCCTGGGCTGCGTGCACAGCCTTAGCCACGCGCTGGGCGGGATCAACCCGCGCCTGCACCACGGCACCCt < 7:124809/135‑1 (MQ=255) cAACCTGGACGGGCGCATCAACATGATGAGCGCATCGCTGCAAGGTGCGCTGGCCTTCCAGAAAGGCCTGGGCTGCGTGCACAGCCTTAGCCACGCGCTGGGCGGGATCAACCCGCGCCTGCACAACGGCACCCt > 8:124809/1‑135 (MQ=255) aCCTGGACGGGCGCATCAACATGATGAGCGCATCGCTGCAAGGTGCGCTGGCCTTCCAGAAAGGCCTGGGCTGCGTGCACAGCCTTAGCCACGCGCTGGGCGGGATCAACCCGCGCCTGCACCACGGCACCCTCAATGCGATCTTcctg < 5:210509/149‑1 (MQ=255) gggCGCATCAACATGATGAGCGCATCGCTGCAAGGTGCGCTGGCCTTCCAGAAAGGCCTGGGCTGCGTGCACAGCCTTAGCCACGCGCTGGGCGGGATCAACCCGCGCCTGCACCACGGCACCCTCAATGCGATCTTCCTGCCTGCCGt < 3:40319/149‑1 (MQ=255) gggCGCATCAACATGATGAGCGCATCGCTGCAAGGTGCGCTGGCCTTCCAGAAAGGCCTGGGCTGCGTGCACAGCCTTAGCCACGCGCTGGGCGGGATCAACCCGCGCCTGCACCACGGCACCCTCAATGCGATCTTCCTGCCTGCCGt > 3:151796/1‑149 (MQ=255) gcgcATCAACATGATGAGCGCATCGCTGCAAGGTGCGCTGGCCTTCCAGAAAGGCCTGGGCTGCGTGCACAGCCTTAGCCACGCGCTGGGCGGGATCAACCCGCGCCTGCACCACg > 7:245811/1‑116 (MQ=255) gcgcATCAACATGATGAGCGCATCGCTGCAAGGTGCGCTGGCCTTCCAGAAAGGCCTGGGCTGCGTGCACAGCCTTAGCCACGCGCTGGGCGGGATCAACCCGCGCCTGCACCACg < 8:245811/116‑1 (MQ=255) cATCAACATGATGAGCGCATCGCTGCAAGGTGCGCTGGCCTTCCAGAAAGGCCTGGGCTGCGTGCACAGCCTTAGCCACGCGCTGGGCGGGATCAACCCGCGCCTGCACCACGGCACCCTCAATGCGATCTTCCTGCCTGCCGTCATcc < 8:198786/149‑1 (MQ=255) tCAACATGATGAGCGCATCGCTGCAAGGTGCGCTGGCCTTCCAGAAAGGCCTGGGCTGCGTGCACAGCCTTAGCCACGCGCTGGGCGGGATCAACCCGCGCCTGCACCACGGCACCCTCAATGCGATCTTCCTGCCTGCCGTCATCCGc < 5:189831/149‑1 (MQ=255) tCAACATGATGAGCGCATCGCTGCAAGGTGCGCTGGCCTTCCAGAAAGGCCTGGGCTGCGTGCACAGCCTTAGCCACGCGCTGGGCGGGATCAACCCGCGCCTGCACCACGGCACCCTCAATGCGATCTTCCTGCCTGCCGTCATCCGc < 3:117116/149‑1 (MQ=255) aCATGATGAGCGCATCGCTGCAAGGTGCGCTGGCCTTCCAGAAAGGCCTGGGCTGCGTGCACAGCCTTAGCCACGCGCTGGGCGGGATCAACCCGCGCCTGCACCACGGCACCCTCAATGCGATCTTCCTGCCTGCCGTCATCCGCTTc < 2:6578/149‑1 (MQ=255) cAAGGTGCGCTGGCCTTCCAGAAAGGCCTGGGCTGCGTGcaca < 4:21260/43‑1 (MQ=255) cAAGGTGCGCTGGCCTTCCAGAAAGGCCTGGGCTGCGTGcaca > 3:21260/1‑43 (MQ=255) aGGTGCGCTGGCCTTCCAGAAAGGCCTGGGCTGCGTGCACAGCCTTAGCCACGCGCTGGGCGGGATCAACCCGCGCCTGCACCACGGCACCCTCAATGCGATCTTCCTGCCTGCCGTCATCCGCTTCAACCGCACGGCCGAAACggtgg < 6:224884/149‑1 (MQ=255) ccaggCCTTTCTGGAAGGCCTGGGCTGCGTGCACAGCCTTAGCCACGCGCTGGGCGGGATCAACCCGCGCCTGCACCACGGCACCCTCAATGCGATCTTCCTGCCTGCCGTCATCCGCTTCAACCGCACGGCCGAAACGGTGGtgaatg > 8:177908/4‑149 (MQ=255) tccTTCCAGAAAGGCCTGGGCTGCGTGCACAGCCTTAGCCACGCGCTGGGCGGGATCAACCCGCGCCTGCACCACGGCACCCTCAATGCGATCTTCCTGCCTGCCGTCATCCGCTTCAACCGCACGGCCGAAACGGTGGTGAATGAac < 1:231715/147‑1 (MQ=255) ccTTCCAGAAAGGCCTGGGCTGCGTGCACAGCCTTAGCCACGCGCTGGGCGGGATCAACCCGCGCCTGCACCACGGCACCCTCAATGCGATCTTCCTGCCTGCCGTCATCCGCTTCAACCGCACGGCCGAAACGGTGGTGAATGAacac < 6:89544/149‑1 (MQ=255) ccTTCCAGAAAGGCCTGGGCTGCGTGCACAGCCTTAGCCACGCGCTGGGCGGGATCAACCCGCGCCTGCACCACGGCACCCTCAATGCGATCTTCCTGCCTGCCGTCATCCGCTTCAACCGCACGGCCGAAACGGTGGTGAATGAaca > 4:42576/1‑148 (MQ=255) ttCCAGAAAGGCCTGGGCTGCGTGCACAGCCTTAGCCACGCGCTGGGCGGGATCAACCCGCGCCTGCACCACGGCACCCTCAATGCGATCTTCCTGCCTGCCGTCATCCGCTTCAACCGCACGGCCGAAACGGTGGTGAATGAacac > 3:121694/1‑147 (MQ=255) ttCCAGAAAGGCCTGGGCTGCGTGCACAGCCTTAGCCACGCGCTGGGCGGGATCAA‑CCGCGCCTGCACCACGGCACCCTCAATGCGAt < 6:24658/88‑1 (MQ=255) ttCCAGAAAGGCCTGGGCTGCGTGCACAGCCTTAGCCACGCGCTGGGCGGGATCAA‑CCGCGCCTGCACCACGGCACCCTCAATGCGAt > 5:24658/1‑88 (MQ=255) | CCTGCGTTCAACCCGCCTGCCGACGGCATTGCCCTGGACGGCCTGTGGAGGGCCTGGCGCTTCATCGAACGAGCCACCCGCGCGCCGGGCAACCTGGACGGGCGCATCAACATGATGAGCGCATCGCTGCAAGGTGCGCTGGCCTTCCAGAAAGGCCTGGGCTGCGTGCACAGCCTTAGCCACGCGCTGGGCGGGATCAACCCGCGCCTGCACCACGGCACCCTCAATGCGATCTTCCTGCCTGCCGTCATCCGCTTCAACCGCACGGCCGAAACGGTGGTGAATGAACAC > NC_002947/3038347‑3038637 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |