Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 282,578 | A→T | 6.6% | N10I (AAT→ATT) | betT‑II → | choline/carnitine/betaine transporter |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 282,578 | 0 | A | T | 6.6% | 181.4 / 3.2 | 61 | N10I (AAT→ATT) | betT‑II | choline/carnitine/betaine transporter |
Reads supporting (aligned to +/- strand): ref base A (30/27); new base T (2/2); total (32/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.44e-01 |
TTTAACTTGAACGCTTGTTCAATGAAAAACGCTGGTCCGCTGCCGGTGTTCAACAGGAGGATTCCTTTGCTGAACCCGTTCATTCCGAACCTCACGTCATTCGACGAGGTGCACGCCCTATGAGTGCACCGAACCCTTCCCTTGCCAATGGCAAGAT‑CCGCATGAACCCCCCGGTGTTCTACTTTGCGGCGAGTTTCATCCTCATCTTTGGCCTGGTAGTCATCTCCAACCCGCAAGCCGCAGGTGACTGGTTGCTGGCAGCGCAGAACTGGGCGGCCAACACGGTCGGCTGG > NC_002947/282431‑282723 | tttAACTTGAACGCTTGTTCAATGAAAAACGCTGGTCCGCTGCCGGTGTTCAACAGGAGGATTCCTTTGCTGAACCCGTTCATTCCGAACCTCACGTCATTCGACGAGGTGCACGCCCTATGAGTGCACCGAACCCTTCCCTTGCCAAt < 3:236357/149‑1 (MQ=255) atctcTTGTTCAATGAAAAACGCTGGTCCGCTGCCGGTGTTCAACAGGAGGATTCCTTTGCTGAACCCGTTCATTCCGAACCTCACGTCATTCGACGAGGTGCACGCCCTATGAGTGCACCGAACCCTTCCCTTGCCATTGGCAAggga < 5:45028/145‑4 (MQ=255) gCTTGTTCAATGAAAAACGCTGGTCCGCTGCCGGTGTTCAACAGGAGGATTCCTTTGCTGAACCCGTTCATTCCGAACCTCACGTCATTCGACGAGGTGCACGCCCTATGAGTGCACCGAACCCTTCCCTTGCCAATGGCAAGAT‑CCGc < 6:209733/149‑1 (MQ=255) ttGTTCAATGAAAAACGCTGGTCCGCTGCCGGTGTTCAACAGGAGGATTCCTTTGCTGAACCCGTTCATTCCGAACCTCACGTCATTCGACGAGGTGCACGCCCTATGAGTGCACCGAACCCTTCCCTTGCCATTGGCAAggga > 6:45028/1‑141 (MQ=255) gTTCAATGAAAAACGCTGGTCCGCTGCCGGTGTTCAACAGGAGGATTCCTTTGCTGAACCCGTTCATTCCGAACCTCACGTCATTCGACGAGGTGCACGCCCTATGAGTGCACCGAACCCTTCCCTTGCCAATGGCa < 3:227921/137‑1 (MQ=255) gTTCAATGAAAAACGCTGGTCCGCTGCCGGTGTTCAACAGGAGGATTCCTTTGCTGAACCCGTTCATTCCGAACCTCACGTCATTCGACGAGGTGCACGCCCTATGAGTGCACCGAACCCTTCCCTTGCCAATGGCAAGAT‑CCGCATg > 6:155434/1‑148 (MQ=255) gTTCAATGAAAAACGCTGGTCCGCTGCCGGTGTTCAACAGGAGGATTCCTTTGCTGAAACCGTTCATTCCGAACCTCACGTCATTCGACGAGGTGCACGCCCTATGAGTGCACCGAACCCTTCCCTTGCCAATGGCa > 4:227921/1‑137 (MQ=255) tCAATGAAAAACGCTGGTCCGCTGCCGGTGTTCAACAGGAGGATTCCTTTGCTGAACCCGTTCATTCCGAACCTCACGTTATTCGACGAGGTGCACGCCCTATGAGTGCACCGAACCCTTCCCTTGCCAATGGCAAGAT‑CCGCATGacc > 6:39104/1‑147 (MQ=255) tCAATGAAAAACGCTGGTCCGCTGCCGGTGTTCAACAGGAGGATTCCTTTGCTGAACCCGTTCATTCCGAACCTCACGTCATTCGACGAGGTGCACGCCCTATGAGTGCACCGAACCCTTCCCTTGCCAATGGCAAGAT‑CCGCATGAAc > 2:171897/1‑149 (MQ=255) aTGAAAAACGCTGGTCCGCTGCCGGTGTTCAACAGGAGGATTCCTTTGCTGAACCCGTTCATTCCGAACCTCACGTCATTCGACGAGGTGCACGCCCTATGAGTGCACCGAACCCTTCCCTTGCCAATGGCAAGAT‑CCGCATGAAcccc > 2:234643/1‑149 (MQ=255) tGAAAAACGCTGGTCCGCTGCCGGTGTTCAACAGGAGGATTCCTTTGCTGAACCCGTTCATTCCGAACCTCACGTCATTCGACGAGGTGCACGCCCTATGAGTGCACCGAACCCTTCCCTTGCCAATGGCAAGAT‑CCGCATGAAccccc > 1:60878/1‑149 (MQ=255) aaaaaCGCTGGTCCGCTGCCGGTGTTCAACAGGAGGATTCCTTTGCTGAACCCGTTCATTCCGAACCTCACGTCATTCGACGAGGTGCACGCCCTATGAGTGCACCGAACCCTTCCCTTGCCAATGGCAAGAT‑CCGCATGAACCCCCCg > 2:165287/1‑149 (MQ=255) aaaaCGCTGGTCCGCTGCCGGTGTTCAACAGGAGGATTCCTTTGCTGAACCCGTTCATTCCGAACCTCACGTCATTCGACGAGGTGCACGCCCTATGAGTGCACCGAACCCTTCCCTTGCCAATGGCAAGAT‑CCGCATGAACCCCCCgg < 3:208018/149‑1 (MQ=255) aCGCTGGTCCGCTGCCGGTGTTCAACAGGAGGATTCCTTTGCTGAACCCGTTCATTCCGAACCTCACGTCATTCGACGAGGTGCACGCCCTATGAGTGCACCGAACCCTTCCCTTGCCAATGGCAAGAT‑CCGCATGAACCCCCCGgtgt < 1:99597/149‑1 (MQ=255) tGGTCCGCTGCCGGTGTTCAACAGGAGGATTCCTTTGCTGAACCCGTTCATTCCGAACCTCACGTCATTCGACGAGGTGCACGCCCTATGAGTGCACCGAACCCTTCCCTTGCCAATGGCAAGAt < 3:91355/125‑1 (MQ=255) tGGTCCGCTGCCGGTGTTCAACAGGAGGATTCCTTTGCTGAACCCGTTCATTCCGAACCTCACGTCATTCGACGAGGTGCACGCCCTATGAGTGCACCGAACCCTTCCCTTGCCAATGGCAAGAt > 4:91355/1‑125 (MQ=255) ccGCTGCCGGTGTTCAACAGGAGGATTCCTTTGCTGAACCCGTTCATTCCGAACCTCACGTCATTCGACGAGGTGCACGCCCTATGAGTGCACCGAACCCTTCCCTTGCCAATGGCAAGAT‑CCGCATGAACCCCCCGGTGTTCTACttt > 7:17462/1‑149 (MQ=255) cGCTGCCGGTGTTCAACAGGAGGATTCCTTTGCTGAACCCGTTCATTCCGAACCTCACGTCATTCGACGAGGTGCACGCCCTATGAGTGCACCGAACCCTTCCCTTGCCAATGGCAAGAT‑CCGCATGAACCCCCCGGTGTTCTACttt < 3:133056/148‑1 (MQ=255) gCTGCCGGTGTTCAACAGGAGGATTCCTTTGCTGAACCCGTTCATTCCGAACCTCACGTCATTCGACGAGGTGCACGCCCTATGAGTGCACCGAACCCTTCCCTTGCCAATGGCAAGAT‑CCGCATGAACCCCCCGGTGTTCTACTTTgc > 1:108061/1‑149 (MQ=255) cTGCCGGTGTTCAACAGGAGGATTCCTTTGCTGAACCCGTTCATTCCGAACCTCACGTCATTCGACGAGGTGCACGCCCTATGAGTGCACCGAACCCTTCCCTTGCCAATGGCAAGAT‑CCGCATGAACCCCCCGGTGTTCTACTTTgcg < 1:171897/149‑1 (MQ=255) ccGGTGTTCAACAGGAGGATTCCTTTGCTGAACCCGTTCATTCCGAACCTCACGTCATTCGACGAGGTGCACGCCCTATGAGTGCACCGAACCCTTCCCTTGCCATTGGCAAgggaa > 4:262016/1‑113 (MQ=255) ccGGTGTTCAACAGGAGGATTCCTTTGCTGAACCCGTTCATTCCGAACCTCACGTCATTCGACGAGGTGCACGCCCTATGAGTGCACCGAACCCTTCCCTTGCCATTGGCAAgggaa < 3:262016/117‑5 (MQ=255) ccGGTGTTCAACAGGAGGATTCCTTTGCTGAACCCGTTCATTCCGAACCTCACGTCATTCGACGAGGTGCACGCCCTATGAGTGCACCGAACCCTTCCCTTGCCAATGGCAAGATCCCGCATGAACCCCCCGGTGTTCTACTTTgcgg < 1:165287/148‑1 (MQ=255) cGGTGTTCAACAGGAGTATTCCTTTGCTGAACCCGTTCATTCCGAACCTCACGTCATTCGACGAGGTGCACGCCCTATGAGTGCACCGAACCCTTCCCTTGCCAATGGCAAGAT‑CCGCATGAACCCCCCGGTGTTCTACTTTGCGGCGa < 8:106302/149‑1 (MQ=255) tCAACAGGAGGATTCCTTTGCTGAACCCGTTCATTCCGAACCTCACGTCATTCGACGAGGTGCACGCCCTATGAGTGCACCGAACCCTTCCCTTGCCAATGGCAAGAT‑CCGCATGAACCCCCCGGTGTTCTAATTTGCGGCGAGTTTCa > 7:199285/1‑149 (MQ=255) aaCAGGAGGATTCCTTTGCTGAACCCGTTCATTCCGAACCTCACGTCATTCGACGAGGTGCACGCCCTATGAGTGCACCGAACCCTTCCCTTGCCAATGGCAAGAT‑CCGCATGAACCCCCCGGTGTTCTACTTTGCGGCGAGTTTCATc < 4:163618/149‑1 (MQ=255) aaCAGGAGGATTCCTTTGCTGAACCCGTTCATTCCGAACCTCACGTCATTCGACGAGGTGCACGCCCTATGAGTGCACCGAACCCTTCCCTTGCCAATGGCAAGAT‑CCGCATGAACCCCCCGGTGTTCTACTTTGCGGCGAGTTTCATc > 4:26667/1‑149 (MQ=255) aCAGGAGGATTCCTTTGCTGAACCCGTTCATTCCGAACCTCACGTCATTCGACGAGGTGCACGCCCTATGAGTGCACCGAACCCTTCCCTTGCCAATGGCAAGAT‑CCGCATGAACCCCCCGGTGTTCTACTTTGCGGCGa < 6:203802/140‑1 (MQ=255) aCAGGAGGATTCCTTTGCTGAACCCGTTCATTCCGAACCTCACGTCATTCGACGAGGTGCACGCCCTATGAGTGCACCGAACCCTTCCCTTGCCAATGGCAAGAT‑CCGCATGAACCCCCCGGTGTTCTACTTTGCGGCGa > 5:203802/1‑140 (MQ=255) cAGGAGGATTCCTTTGCTGAACCCGTTCATTCCGAACCTCACGTCATTCGACGAGGTGCACGCCCTATGAGTGCACCGAACCCTTCCCTTGCCAATGGCAAGAT‑CCGCATGAACCCCCCGGTGTTCTACTTTGCGGCGAGTTTCATCCt < 2:60878/149‑1 (MQ=255) gaggaTTCCTTTGCTGAACCCGTTCATTCCGAACCTCACGTCATTCGACGAGGTGCACGCCCTATGAGTGCACCGAACCCTTCCCTTGCCAATGGCAAGAT‑CCGCATGAACCCCCCGGTGTTCTACTTTGCGGCGAGTTTCATCCTCa > 8:143845/1‑148 (MQ=255) ttCCTTTGCTGAACCCGTTCATTCCGAACCTCACGTCATTCGACGAGGTGCACGCCCTATGAGTGCACCGAACCCTTCCCTTGCCAATGGCAAGAT‑CCGCATGAACCCCCCGGTGTTCTACTTTGCGGCGAGTTTCATCCTCATCTTTg < 7:143845/149‑1 (MQ=255) cTGAACCCGTTCATTCCGAACCTCACGTCATTCGACGAGGTGCACGCCCTATGAGTGCACCGAACCCTTCCCTTGCCAATGGCAAGAT‑CCGCATGAACCCCCCGGTGTTCTACt < 6:229607/114‑1 (MQ=255) cTGAACCCGTTCATTCCGAACCTCACGTCATTCGACGAGGTGCACGCCCTATGAGTGCACCGAACCCTTCCCTTGCCAATGGCAAGAT‑CCGCATGAACCCCCCGGTGTTCTACt > 5:229607/1‑114 (MQ=255) cTGAACCCGTTCATTCCGAACCTCACGTCATTCGACGAGGTGCACGCCCTATGAGTGCACCGAACCCTTCCCTTGCCAATGGCAAGAT‑CCGCATGAACCCCCCGGTGTTCTACTTTGCGGCGAGTTTCATCCTCATCTTTGGCCTGGTa < 1:234643/149‑1 (MQ=255) gAACCCGTTCATTCCGAACCTCACGTCATTCGACGAGGTGCACGCCCTATGAGTGCACCGAACCCTTCCCTTGCCAATGGCAAGAT‑CCGCATGAACCCCCCGGTGTTCTACTTTGCGGCGAGTTTCATCCTCATCTTTGGCCTGGTAGt > 4:91576/1‑149 (MQ=255) ccGTTCATTCCGAACCTCACGTCATTCGACGAGGTGCACGCCCTATGAGTGCACCGAACCCTTCCCTTGCCAATGGCAAGAT‑CCGCATGAACCCCCCGGTGTTCTACTTTGCGGCGAGTTTCATCCTCATCt < 8:170316/132‑1 (MQ=255) ccGTTCATTCCGAACCTCACGTCATTCGACGAGGTGCACGCCCTATGAGTGCACCGAACCCTTCCCTTGCCAATGGCAAGAT‑CCGCATGAACCCCCCGGTGTTCTACTTTGCGGCGAGTTTCATCCTCATCt > 7:170316/1‑132 (MQ=255) cGAACCTCACGTCATTCGACGAGGTGCACGCCCTATGAGTGCACCGAACCCTTCCCTTGCCAATGGCAAGAT‑CCGCATGAACCCCCCGGTGTTCTACTTTGCGGCGAGTTTCATCCTCATCTTTGGCCTGGTAGTCATCTCCAACCCg > 3:119027/1‑148 (MQ=255) gacgaGGTGCACGCCCTATGAGTGCACCGAACCCTTCCCTTGCCAATGGCAAGAT‑CCGCATGAACCCCCCGGTGTTCTACTTTGCGGCGAGTTTCATCCTCATCTTTGGCCTGGTAGTCATCTCCAACCCGCAAGCCGCAGGTGACTgg > 1:40819/1‑149 (MQ=255) gacgaGGTGCACGCCCTATGAGTGCACCGAACCCTTCCCTTGCCAATGGCAAGAT‑CCGCATGAACCCCCCGGTGTTCTACTTTGCGGCGAGTTTCATCCTCATCTTTGGCCTGGTAGTCATCTCCAACCCGCAAGCCGCAGGTGACTgg > 8:229957/1‑149 (MQ=255) cgaGGTGCACGCCCTATGAGTGCACCGAACCCTTCCCTTGCCAATGGCAAGAT‑CCGCATGAACCCCCCGGTGTTCTACTTTGCGGCGAGTTTCATCCTCATCTTTGGCCTGGTAGTCATCTCCAACCCGCAAGCCGCAGGTGACTGGtt < 5:155434/149‑1 (MQ=255) cgaGGTGCACGCCCTATGAGTGCACCGAACCCTTCCCTTGCCAATGGCAAGAT‑CCGCATGAACCCCCCGGTGTTCTACTTTGCGGCGAGTTTCATCCTCATCTTTGGCCTGGTAGTCATCTCCAACCCGCAAGCCGCAGGTGACTGGtt < 8:17462/149‑1 (MQ=255) ggTGCACGCCCTATGAGTGCACCGAACCCTTCCCTTGCCAATGGCAAGAT‑CCGCATGAACCCCCCGGTGTTCTACTTTGCGGCGAGTTTCATCCTCATCTTTGGCCTgg > 5:94188/1‑109 (MQ=255) ggTGCACGCCCTATGAGTGCACCGAACCCTTCCCTTGCCAATGGCAAGAT‑CCGCATGAACCCCCCGGTGTTCTACTTTGCGGCGAGTTTCATCCTCATCTTTGGCCTgg < 6:94188/109‑1 (MQ=255) cACGCCCTATGAGTGCACCGAACCCTTCCCTTGCCAATGGCAAGAT‑CCGCATGAACCCCCCGGTGTTCTACTTTGCGGCGAGTTTCATCCTCATCTTTGGCCTGGTAGTCATCTCCAACCCGCAAGCCGCAGGTGACTGGTTGCTgg > 2:156757/1‑147 (MQ=255) ccTATGAGTGCACCGAACCCTTCCCTTGCCAATGGCAAGAT‑CCGCATGAACCCCCCGGTGTTCTACTTTGCGGCGAGTTTCATCCTCATCTTTGGCCTGGTAGTCATCTCCAACCCGCAAGCCGCAGGTGACTGGTTGCTGGCAGCGCa > 5:199574/1‑149 (MQ=255) aTGAGTGCACCGAACCCTTCCCTTGCCAATGGCAAGAT‑CCGCATGAACCCCCCGGTGTTCTACTTTGCGGCGAGTTTCATCCTCATCTTTGGCCTGGTAGTCATCTCCAACCCGCAAGCCGCAGGGGACTGGTTGCTGGCAGCGCAGaa > 4:86646/1‑149 (MQ=255) aaCCCTTCCCTTGCCAATGGCAAGAT‑CCGCATGAACCCCCCGGTGTTCTACTTTGCGGCGAGTTTCATCCTCATCTTTGGCCTGGTa > 1:74594/1‑87 (MQ=255) aaCCCTTCCCTTGCCAATGGCAAGAT‑CCGCATGAACCCCCCGGTGTTCTACTTTGCGGCGAGTTTCATCCTCATCTTTGGCCTGGTa < 2:74594/87‑1 (MQ=255) cccttcccttGCCAATGGCAAGAT‑CCGCATGAACCCCCCGGTGTTCTACTTTGCGGCGAGTTTCATCCTCATCTTTGGCCTGGTAGTCATCTCCAACCCGCAAGCCGCAGGTGAGTGGTTGCTGGCCGCGAAGCACTGGGCGGCCAaca > 8:101589/1‑149 (MQ=255) cccttcccttGCCAATGGCAAGAT‑CCGCATGAACCCCCCGGTGTTCTACTTTGCGGCGAGTTTCATCCTCATCTTTGGCCTGGTAGTCATCTCCAACCCGCAAGCCGCAGGTGACTGGTTGCTGGCAGCGCAGAACTGGGCGGCCAaca < 1:156757/149‑1 (MQ=255) ccttcccttGCCAATGGCAAGAT‑CCGCATGAACCCCCCGGTGTTCTACTTTGCGGCGAGTTTCATCCTCATCTTTGGCCTGGTAGTCATCTCCAACCCGCAAGCCGCAGGTGACTGGTTGCTGGCCGCCCAGTTCTGCGCTGCCAgcaa < 5:39104/149‑2 (MQ=255) gCCAATGGCAAGAT‑CCGCATGAACCCCCCGGTGTTCTACTTTGCGGCGAGTTTCATCCTCATCTTTGGCCTGGTAGTCATCTCCAACCCGCAAGCCGCAGGTGACTGGTTGCTGGCAGCGCAGAACTGGGCGGCCAACACGGTCGGc < 2:40819/147‑1 (MQ=255) gCCAATGGCAAGAT‑CCGCATGAACCCCCCGGTGTTCTACTTTGCGGCGAGTTTCATCCTCATCTTTGGCCTGGTAGTCATCTCCAACCCGCAAGCCGCAGGTGACTGGTTGCTGGCAGCGCAGAACTGGGCGGCCAACACGGTCGGCTg > 1:169808/1‑149 (MQ=255) ccAATGGCAAGAT‑CCGCATGAACCCCCCGGTGTTCTACTTTGCGGCGAGTTTCATCCTCATCTTTGGCCTGGTAGTCATCTCCAACCCGCAAGCCGCAGGTGACTGGTTGCTGGCAgcgc < 7:6615/120‑1 (MQ=255) ccAATGGCAAGAT‑CCGCATGAACCCCCCGGTGTTCTACTTTGCGGCGAGTTTCATCCTCATCTTTGGCCTGGTAGTCATCTCCAACCCGCAAGCCGCAGGTGACTGGTTGCTGGCAgcgc > 8:6615/1‑120 (MQ=255) ccAATGGCAAGAT‑CCGCATGAACCCCCCGGTGTTCTACTTTGCGGCGAGTTTCATCCTCATCTTTGGCCTGGTAGTCATCTCCAACCCGCAAGCCGCAGGTGACTGGTTGCTGGCAGCGCAGAACTGGGCGGCCAACACGGTCGGCTg < 3:86646/148‑1 (MQ=255) cAATGGCAAGAT‑CCGCATGAACCCCCCGGTGTTCTACTTTGCGGCGAGTTTCATCCTCATCTTTGGCCTGGTAGTCATCTCCAACCCGCAAGCCGCAGGTGACTGGTTGCTgg > 6:18528/1‑113 (MQ=255) cAATGGCAAGAT‑CCGCATGAACCCCCCGGTGTTCTACTTTGCGGCGAGTTTCATCCTCATCTTTGGCCTGGTAGTCATCTCCAACCCGCAAGCCGCAGGTGACTGGTTGCTgg < 5:18528/113‑1 (MQ=255) cAATGGCAAGAT‑CCGCATGAACCACCCGGTGTTCTACTTTGCGGCGAGTTTCATCCTAATCTTTGGCCTGGTATTCATATACAACCCGCAAGCAGCAGGTGAATGGTTGATGGCAGCGCAGAACTGGGCGGCAAACACGGTAggattg > 6:145757/1‑144 (MQ=255) | TTTAACTTGAACGCTTGTTCAATGAAAAACGCTGGTCCGCTGCCGGTGTTCAACAGGAGGATTCCTTTGCTGAACCCGTTCATTCCGAACCTCACGTCATTCGACGAGGTGCACGCCCTATGAGTGCACCGAACCCTTCCCTTGCCAATGGCAAGAT‑CCGCATGAACCCCCCGGTGTTCTACTTTGCGGCGAGTTTCATCCTCATCTTTGGCCTGGTAGTCATCTCCAACCCGCAAGCCGCAGGTGACTGGTTGCTGGCAGCGCAGAACTGGGCGGCCAACACGGTCGGCTGG > NC_002947/282431‑282723 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |