Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,071,959 | A→C | 8.6% | H271P (CAC→CCC) | yiaY → | Fe‑containing alcohol dehydrogenase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,071,959 | 0 | A | C | 8.6% | 127.7 / 3.4 | 46 | H271P (CAC→CCC) | yiaY | Fe‑containing alcohol dehydrogenase |
Reads supporting (aligned to +/- strand): ref base A (22/20); new base C (2/2); total (24/22) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.36e-01 |
GCCTGATCAATGGCAACCTGGTGGAGATGATCGCCAACCCTACTGATATTGCGCTGCGCGAGAAGATCATGCTCGGCAGCATGCAGGCGGGGCTGGCGTTCTCCAATGCGATCCTGGGCGCAGTGCACGCCATGTCGCACAGCCTGGGCGGCTTCCTCGACTTGCCCCATGGCTTGTGCAACGCGGTGCTGGTGGAGCACGTGGTGGCGTTCAACTACAGCTCGGCGCCGGAGCGTTTCAAGGTGATCGCCGAGGTGTTTGGTATCGACTGCCGCGGTCTCA > NC_002947/3071821‑3072102 | gcCTGATCAATGGCAACCTGGTGGAGATGATCGCCAACCCTACTGATATTGCGCTGCGCGAGAAGATCATGCTCGGCAGCATGCAGGCGGGGCTGGCGTTCTCCAATGCGATCCTGGGCGCAGTGCACGCCATGTCGCACAGCCTGggc < 5:216229/149‑1 (MQ=255) tCAATGGCAACCTGGTGGAGATGATCGCCAACCCTACTGATATTGCGCTGCGCGAGAAGATCATGCTCGGCAGCATGCAGGCGGGGCTGGCGTTCTCCAATGCGATCCTGGGCGCAGTGCACGCCATGCCGCCCAGGCTGtgcgacatg > 3:92775/1‑144 (MQ=255) tCAATGGCAACCTGGTGGAGATGATCGCCAACCCTACTGATATTGCGCTGCGCGAGAAGATCATGCTCGGCAGCATGCAGGCGGGGCTGGCGTTCTCCAATGCGATCCTGGGCGCAGTGCACGCCATGCCGCCCAGGCTGtgcgacatg > 3:88856/1‑144 (MQ=255) aaTGGCAACCTGGTGGAGATGATCGCCAACCCTACTGATATTGCGCTGCGCGAGAAGATCATGCTCGGCAGCATGCAGGCGGGGCTGGCGTTCTCCAATGCGATCCTGGGCGCAGTGCACGCCATGCCGCCCAGGCTGtgcgacatggc < 4:92775/149‑8 (MQ=255) aaTGGCAACCTGGTGGAGATGATCGCCAACCCTACTGATATTGCGCTGCGCGAGAAGATCATGCTCGGCAGCATGCAGGCGGGGCTGGCGTTCTCCAATGCGATCCTGGGCGCAGTGCACGCCATGCCGCCCAGGCTGtgcgacatggc < 4:88856/149‑8 (MQ=255) aTGGCAACCTGGTGGAGATGATCGCCAACCCTACTGATATTCCGCTGCGCGAGAAGATCATGCTCGGCAGCATGCAGGCGGGGCTGGCGTTCTCCAATGCGATCCTGGGCGCAGTGCACGCCATGTCGCACAGCCTGGGCGGCTTCCTc < 8:59951/149‑1 (MQ=255) gCAACCTGGTGGAGATGATCGCCAACCCTACTGATATTGCGCTGCGCGAGAAGATCATGCTCGGCAGCATGCAGGCGGGGCTGGCGTTCTCCAATGCGATCCTGGGCGCAGTGCACGCCATGTCGCACAGCCTGGGCGGCTTCCTCGAc > 2:230721/1‑149 (MQ=255) gCAACCTGGTGGAGATGATCGCCAACCCTACTGATATTGCGCTGCGCGAGAAGATCATGCTCGGCAGCATGCAGGCGGGGCTGGCGTTCTCCAATGCGATCCTGGGCGCAGTGCACGCCATGTCGCACAGCCTGGGCGGCTTCCTCGAc < 3:228495/149‑1 (MQ=255) cAACCTGGTGGAGATGATCGCCAACCCTACTGATATTGCGCTGCGCGAGAAGATCATGCTCGGCAGCATGCAGGCGGGGCTGGCGTTCTCCAATGCGATCCTGGGCGCAGTGCACGCCATGTCGCACAGCCTGGGCGGCTTCCTCGACt > 3:223771/1‑149 (MQ=255) aaCCTGGTGGAGATGATCGCCAACCCTACTGATATTGCGCTGCGCGAGAAGATCATGCTCGGCAGCATGCAGGCGGGGCTGGCGTTCTCCAATGCGATCCTGGGCGCAGTGCACGCCATGTCGCACAGCCTGGGCGGCTTCCTCGACtt > 3:75128/1‑149 (MQ=255) agaTGATCGCCAACCCTACTGATATTGCGCTGCGCGAGAAGATCATGCTCGGCAGCATGCAGGCGGGGCTGGCGTTCTCCAATGCGATCCTGGGCGCAGTGCACGCCATGTCGCACAGCCTGGGCGGCTTCCTCGACTTGCCCCATGGc > 8:153373/1‑149 (MQ=255) gatgatCGCCAACGCTACTGATATTGGGCTGCGCGAGAAGATCATGCTGGGCAGCATGCAGGCGGGGCTGGCGTTCTCCAATGCGATCCTGGGCGCAGTGCACGCCATGTCGCACAGCCTGGGCGGCTTCCTCGACTTGCCCCATGGc < 4:75128/148‑1 (MQ=255) tgatCGCCAACCCTACTGATATTGCGCTGCGCGAGAAGATCATGCTCGGCAGCATGCAGGCGGGGCTGGCGTTCTCCAATGCGATCCTGGGCGCAGTGCACGCCATGTCGCACAGCCTGGGCGGCTTCCTCGACTTGCCCCATGGCTtg < 1:76786/149‑1 (MQ=255) ggatCGCCAACCCTACTGATATTGCGCTGCGCGAGAAGCTCATGCTCGGCAGCATGCAGGCGGGGCTGGCGTTCTCCAATGCGATCCTGGGCGCAGTGCACGCCATGTCGCACAGCCTGGGCGGCTTCCTCGACTTGCCCCATGGCTtg < 4:42929/148‑1 (MQ=255) gatCGCCAACCCTACTGATATTGCGCTGCGCGAGAAGATCATGCTCGGCAGCATGCAGGCGGGGCTGGCGTTCTCCAATGCGATCCTGGGCGCAGTGCACGCCATGTCGCACAGCCTGGGCGGCTTCCTCGACTTGCCCCATGGCTtgt > 3:118520/1‑149 (MQ=255) cGCCAACCCTACTGATATTGCGCTGCGCGAGAAGATCATGCTCGGCAGCATGCAGGCGGGGCTGGCGTTCTCCAATGCGATCCTGGGCGCAGTGCACGCCATGTCGCACAGCCTGGGCGGCTTCCTCGACTTGCCCCATGGCTTGTGc > 7:185382/1‑148 (MQ=255) ccTACTGATATTGCGCTGCGCGAGAAGATCATGCTCGGCAGCATGCAGGCGGGGCTGGCGTTCTCCAATGCGATCCTGGGCGCAGTGCACGCCATGTCGCACAGCCTGGGCGGCTTCCTCGACTTGCCCCATGGCtt < 1:164672/137‑1 (MQ=255) ccTACTGATATTGCGCTGCGCGAGAAGATCATGCTCGGCAGCATGCAGGCGGGGCTGGCGTTCTCCAATGCGATCCTGGGCGCAGTGCACGCCATGTCGCACAGCCTGGGCGGCTTCCTCGACTTGCCCCATGGCtt > 2:164672/1‑137 (MQ=255) cTGATATTGCGCTGCGCGAGAAGATCATGCTCGGCAGCATGCAGGCGGGGCTGGCGTTCTCCAATGCGATCCTGGGCGCAGTGCACGCCATGTCGCACAGCCTGGGCGGCTTCCTCGACTTGCCCCATGGCTTGTGCAACGCGGTGCtg > 3:182557/1‑149 (MQ=255) tatTGCGCTGCGCGAGAAGATCATGCTCGGCAGCATGCAGGCGGGGCTGGCGTTCTCCAATGCGATCCTGGGCGCAGTGCACGCCATGTCGCACAGCCTGGGCGGCTTCCTCGACTTGCCCCATGGCTTGTGCAACGCGGTGCtggtg > 3:149968/1‑148 (MQ=255) ttGCGCTGCGCGAGAAGATCATGCTCGGCAGCATGCAGGCGGGGCTGGCGTTCTCCAATGCGATCCTGGGCGCAGTGCACGCCATGTCGCACAGCCTGGGCGGCTTCCTCGACTTGCCCCATGGCTTGTGCAACGCGGTGCTGGTGGa < 1:33230/148‑1 (MQ=255) ttGCGCTGCGCGAGAAGATCATGCTCGGCAGCATGCAGGCGGGGCTGGCGTTCTCCAATGCGATCCTGGGCGCAGTGCACGCCATGTCGCACAGCCTGGGCGGCTTCCTCGACTTGCCCCATGGCTTGTGCAACGCGGTGCTGGTGGAg > 5:154530/1‑149 (MQ=255) aTCATGCTCGGCAGCATGCAGGCGGGGCTGGCGTTCTCCAATGCGATCCTGGGCGCAGTGCACGCCATGTCGCACAGCCTGGGCGGCTTCCTCGACTTGCCCCATGGCTTGTGCAACGCGGTGCTGGTGGAGCACGTGGTGGCGTTCaa < 4:118520/149‑1 (MQ=255) aTCATGCTCGGCAGCATGCAGGCGGGGCTGGCGTTCTCCAATGCGATCCTGGGCGCAGTGCACGCCATGTCGCACAGCCTGGGCGGCTTCCTCGACTAGCCCCATGGCTTGTGCAACGCGGTGCTGGTGGAGCACGTGGTGGCGTTCaa > 5:1574/1‑149 (MQ=255) tCATGCTCGGCAGCATGCAGGCGGGGCTGGCGTTCTCCAATGCGATCCTGGGCGCAGTGCACGCCATGTCGCACAGCCTGGGCGGCTTCCTCGACTTGCCCCATGGCTTGTGCAACGCGGTGCTGGTGGAGCACGTGGTGGCGTTCaa < 6:154530/148‑1 (MQ=255) tCATGCTCGGCAGCATGCAGGCGGGGCTGGCGTTCTCCAATGCGATCCTGGGCGCAGTGCACGCCATGTCGCACAGCCTGGGCGGCTTCCTCGACTTGCCCCATGGCTTGTGCAACGCGGTGCTGGTGGAGCACGTGGTGGCGTTCAAc < 1:49310/149‑1 (MQ=255) cagcaTGCAGGCGGGGCTGGCGTTCTCCAATGCGATCCTGGGCGCAGTGCACGCCATGTCGCACAGCCTGGGCGGCTTCCTCGACTTGCCCCATGGCTTGTGCAACGCGGTGCTGGTGGAGCa > 6:254090/1‑123 (MQ=255) caTGCAGGCGGGGCTGGCGTTCTCCAATGCGATCCTGGGCGCAGTGCACGCCATGTGGCACAGGCTGGGCGGCTTCCTCGAGTTGCCCCATGGCTTGTGCAACGCGGTGCTGGTGGAGCACGTGGTGGCGTTCAACTACAGCTCGgcgc < 8:185382/149‑1 (MQ=255) gCAGGCGGGGCTGGCGTTCTCCAATGCGATCCTGGGCGCAGTGCACGCCATGTCGCACAGCCTGGGCGGCTTCCTCGACTTGCCCCATGGCTTGTGCAACGCGGTGCTGGTGGAGCACGTGGTGGCGTTc > 4:242083/1‑130 (MQ=255) gCAGGCGGGGCTGGCGTTCTCCAATGCGATCCTGGGCGCAGTGCACGCCATGTCGCACAGCCTGGGCGGCTTCCTCGACTTGCCCCATGGCTTGTGCAACGCGGTGCTGGTGGAGCACGTGGTGGCGTTc < 3:242083/130‑1 (MQ=255) ggCGGGGCTGGCGTTCTCCAATGCGATCCTGGGCGCAGTGCACGCCATGTCGCACAGCCTGGGCGGCTTCCTCGACTTGCCCCATGGCTTGTGCAACGCGGTGCTGGTGGAGCACGTGGTGGCGTTCAACTACAGCTCGGCGCCGGAGc > 5:135734/1‑149 (MQ=255) tGGCGTTCTCCAATGCGATCCTGGGCGCAGTGCGCGCCATGTCGCACAGCCTGGGCGGCTTCCTc < 5:21529/65‑1 (MQ=255) tGGCGTTCTCCAATGCGATCCTGGGCGCAGTGCGCGCCATGTCGCACAGCCTGGGCGGCTTCCTc > 6:21529/1‑65 (MQ=255) gCGTTCTCCAATGCGATCCTGGGCGCAGTGCACGCCATGTCGCACAGCCTGGGCGGCTTCCTCGACTTGCCCCATGGCTTGTGCAACGCGGTGCTGGTGGAGCACGTGGTGGCGTTCAACTACAGCTCGGCGCCGGAGCGTTTCAAgg < 4:149968/148‑1 (MQ=255) gCGTTCTCCAATGCGATCCTGGGCGCAGTGCACGCCATGTCGCACAGCCTGGGCGGCTTCCTCGACTTGCCCCATGGCTTGTGCAACGCGGTGCTGGTGGAGCACGTGGTGGCGTTCAACTACAGCTCGGCGCCGGAGCGTTTCAAGGt > 7:254422/1‑149 (MQ=255) tcCAATGCGATCCTGGGCGCAGTGCACGCCATGTCGCACAGCCTGGGCGGCTTCCTCGACTTGCCCCATGGCTTGTGCAACGCGGTGCTGGTGGAGCACGTGGTGGCGTTCAACTACAGCTCGGCGCCGGAGCGTTTCAAGGTGATCGc > 5:103600/1‑149 (MQ=255) tcCAATGCGATCCTGGGCGCAGTGCACGCCATGTCGCACAGCCTGGGCGGCTTCCTCGACTTGCCCCATGGCTTGTGCAACGCGGTGCTGGTGGAGCACGTGGTGGCGTTCAACTACAGCTCGGCGCCGGAGCGTTTCAAGGTGATCGc > 7:20805/1‑149 (MQ=255) cgaaTGCGATCCTGGGCGCAGTGCAGGCCATGTCGCACAGCCTGGGCGGCTTCCTCGACTTGCCCCATGGCTTGTGCAACGCGGTGCTGGTGGAGCACGTGGTGGCGTTCAACTACAGCTCGGCGCCGGAGCGTTTCAAg < 8:91434/138‑1 (MQ=255) ccAATGCGATCCAGGGCGCAGTGCACGCCATGTCGCACAGCCTGGGCGGCTTCCTCGACTTGCCCCATGGCTTGTGCAACGCGGTGCTGGTGGAGCACGTGGTGGCGTTCAACTACAGCTCGGCGCCGGAGCGTTTCAAg > 7:91434/1‑140 (MQ=255) cAATGCGATCCTGGGCTTTTTTAAAGCCATGTCGCACAGCCTGGGAGGCTTCCTAGACTTGCCCCATTGCTTGTGAAAAGGGGTGCTGGTGGAGCACGTTTTTGCGTTGAACTACAGCTGGGCGCCGGAGCGTTTCATGGTGATCggg < 4:182557/148‑3 (MQ=255) aaTGCGATCCTGGGCGCAGTGCACGCCATGTCGCACAGCCTGGGCGGCTTCCTCGACTTGCCCCATGGCTTGTGCAACGCGGTGCTGGTGGAGCACGTGGTGGCGTTCAACTACAGCTCGGCGCCGGAGCGTTTCAAGGTGATCGCCGa > 8:130780/1‑149 (MQ=255) aTCCTGGGCGCAGTGCACGCCATGTCGCACAGCCTGGGCGGCTTCCTCGACTTGCCCCATGGCTTGTGCAACGCGGTGCTGGTGGAGCACGTGGTGGCGTTCAACTACAGCTCGGCGCCGGAGCGTTTCAAGGTGATCGCCGAGGTGtt < 4:223771/149‑1 (MQ=255) aCGCCATGTCGCACAGCCTGGGCGGCTTCCTCGACTTGCCCCATGGCTTGTGCAACGCGGTGCTGGTGGAGCACGTGGTGGCGTTCAACTACAGCTCGGCGCCGGAGCGTTTCAAGGTGATCGCCGAGGTGTTTGGTATCGACTGCcgc > 5:62387/1‑149 (MQ=255) tCGCACAGCCTGGGCGGCTTCCTCGACTTGCCCCATGGCTTGTGCAACGCGGTGCTGGTGGAGCACGTGGTGGCGTTCAACTACAGCTCGGCGCCGGAGCGTTTCAAGGTGATCGCCGAGGTGTTTGGTATCGACTGCCGCGGTCTCa < 8:254422/148‑1 (MQ=255) gCACAGCCTGGGCGGCTTCCTCGACTTGCCCCATGGCTTGTGCAACGCGGTGCTGGTGGAGCACGTGGTGGCGTTCAACTACAGCTCGGCGCCGGAGCGTTTCAAGGTGATCGCCGAGGTGTTTGGTATCGACTGCCGCGGt > 2:239293/1‑142 (MQ=255) gCACAGCCTGGGCGGCTTCCTCGACTTGCCCCATGGCTTGTGCAACGCGGTGCTGGTGGAGCACGTGGTGGCGTTCAACTACAGCTCGGCGCCGGAGCGTTTCAAGGTGATCGCCGAGGTGTTTGGTATCGACTGCCGCGGt < 1:239293/142‑1 (MQ=255) | GCCTGATCAATGGCAACCTGGTGGAGATGATCGCCAACCCTACTGATATTGCGCTGCGCGAGAAGATCATGCTCGGCAGCATGCAGGCGGGGCTGGCGTTCTCCAATGCGATCCTGGGCGCAGTGCACGCCATGTCGCACAGCCTGGGCGGCTTCCTCGACTTGCCCCATGGCTTGTGCAACGCGGTGCTGGTGGAGCACGTGGTGGCGTTCAACTACAGCTCGGCGCCGGAGCGTTTCAAGGTGATCGCCGAGGTGTTTGGTATCGACTGCCGCGGTCTCA > NC_002947/3071821‑3072102 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |