| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,178,156 | C→T | 89.2% | D126N (GAT→AAT) | PP_2789 ← | oxidoreductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,178,156 | 0 | C | T | 89.2% | 93.9 / 3.1 | 37 | D126N (GAT→AAT) | PP_2789 | oxidoreductase |
| Reads supporting (aligned to +/- strand): ref base C (2/2); new base T (18/15); total (20/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.43e-01 | |||||||||||
GTTTTCAGGGGTTTTATGCCGCAGAACTCCAGGGTGGTCTTGCGCATTTGGTGCAGGCCCGGCATGCGATACACCCACCGGTAGTACCACGGCGGCGTGTCCATGGTCACCAGTAGGTGAGCCGTGCGGCCCTTGAGCAGTTTATCCGGGAAGGGCGAGCCCTTGCGGTACTTGAAGGCAAAACCGGGCAGAAACACGCGGTCGAAGAACCCCTTGAGCAACGCCGGAATGCCGCCCCACCAGATCGGGTACACCAATGTCAGGTGTTCGGCCCAGGTAATGTCGTTCTGT > NC_002947/3178011‑3178301 | gTTTTCAGGGGTTTTATGCCGCAGAACTCCAGGGTGGTCTTGCGCATTTGGTGCAGGCCCGGCATGCGATACACCCACCGGTAGTACCACGGCGGCGTGTCCATGGTCACCAGTAGGTGAGCCGTGCGGCCCTTGAGCAGTTTATTCgg > 5:91159/1‑149 (MQ=255) ttCAGGGGTTTTATGCCGCAGAACTCCAGGGTGGTCTTGCGCATTTGGTGCAGGCCCGGCATGCGATACACCCACCGGTAGTACCACGGCGGCGTGTCCATGGTCACCAGTAGGTGAGCCGTGCGGCCCTTGAGCAGTTTATTCGGGa < 5:173850/148‑1 (MQ=255) gTTTTATGCCGCAGAACTCCAGGGTGGTCTTGCGCATTTGGTGCAGGCCCGGCATGCGATACACCCACCGGTAGTACCACGGCGGCGTGTCCATGGTCACCAGTAGGTGAGCCGTGCGGCCCTTGAGCAGTTTATTCGGGAAGGGCGAg < 6:99099/149‑1 (MQ=255) gCCGCAGAACTCCAGGGTGGTCTTGAGCATTTGGTGCAGGCCCGGCATGCGATACACCCACCGGTAGTACAACGGCGGCGTGTCCATGGTCACCAGTAGGTGAGCCGTGAGGCCCTTGAGCAGTTTATTCGGGAAGGGCGAGCCCtt > 3:24418/1‑147 (MQ=255) cGCTGACCTCCACGGTGGTCTTGCGCAATACGTGCACGCCCGGCATCCGATACACCCACCGGTAGTACCACCGCCGCCACACCAAGCACACCAGTAGGTGAGCCGTCCGGCCCATCACCACTATAATCCGGAAGGTCGACCCCTAGcc > 8:160496/1‑147 (MQ=255) tCCAGGGTGGTCTTGCGCATTTGGTGCAGGCCCGGCATGCGATACACCCACCGGTAGTACAACGGCGGCGTGTCCAAGGTCACCAGTAGGTGAGCCGTGCCGCCCTTGAGCAGTTTATTCCGGAAGGGAGAGCCATTGCGCTACATg > 6:175828/1‑147 (MQ=255) cAGGGTGGTCTTGCGCATTTGGTGCAGGCCCGGCATGCGATACACCCACCGGTAGTACCACGGCGGCGTGTCCATGGTCACCAGTAGGTGAGCCGTGCGGCCCTTGAGCAGTTTATTCGGGAAGGGCGAGCCCTTGCGGTACTTGAAg < 6:91159/148‑1 (MQ=255) tggtCTTGCGCATTTTGTGCTGGCCCGGCTAGGGATACTCGCACGGGTAGTACCACGGGGGCGTGTCCATGGTCACCAGTACGTGAGCCGTGCGGCCCTTGAGCAGTTTAATCGGGAAGGGCGAGCCCTTGCGGTACTTGAATGCaaaa < 7:160496/149‑1 (MQ=255) cTTGCGCATTTGGTGCAGGCCCGGCATGCGATACACCCACCGGTAGTACCACGGCGGCGTGTCCATGGTCACCAGTAGGTGAGCCGTGCGGCCCTTGAGCAGTTTATTCGGGAAGGGCGAGCCCTTGCGGTACTTGAAGGCAAAACCgg > 2:204910/1‑149 (MQ=255) gcATTTGGTGCAGGCCCGGCATGCGATACACCCACCGGTAGTACCACGGCGGCGTGTCCATGGTCACCAGTAGGTGAGCCGTGCGGCCCTTGAGCAGTTTATTCGGGAAGGGCGAGCCCTTGCGGTACTTGAAg < 6:238868/134‑1 (MQ=255) gcATTTGGTGCAGGCCCGGCATGCGATACACCCACCGGTAGTACCACGGCGGCGTGTCCATGGTCACCAGTAGGTGAGCCGTGCGGCCCTTGAGCAGTTTATTCGGGAAGGGCGAGCCCTTGCGGTACTTGAAg > 5:238868/1‑134 (MQ=255) cATTTGGTGCAGGCCCGGCATGCGATACACCCACCGGTAGTACCACGGCGGCGTGTCCATGGTCACCAGTAGGTGAGCCGTGCGGCCCTTGAGCAGTTTATTCGGGAAGGGCGAGCCCTTGCGGTACTTGAAGGCAAAACCGGGCAGaa < 7:165523/149‑1 (MQ=255) cATGCGATACACCCACCGGTAGTACCACGGCGGCGTGTCCATGGTCACCAGTAGGTGAGCCGTGCGGCCCTTGAGCAGTTTATTCGGGAAGGGCGAGCCCTTGCGGTACTTGAAGGCAAAACCGGGCAGAAACACGCGGTCGAAGAAcc < 1:204910/149‑1 (MQ=255) gCGATACACCCACCGGTAGTACCACGGCGGCGTGTCCATGGTCACCAGTAGGTGAGCCGTGCGGCCCTTGAGCAGTTTATTCGGGAAGGGCGAGCCCTTGCGGTACTTGAAGGCAAAACCGGGCAGAAACACGCGGTCGAAGAACCCCt > 8:205276/1‑149 (MQ=255) tACACCCACCGGTAGTACCACGGCGGCGTGTCCATGGTCACCAGTAGGTGAGCCGTGCGGCCCTTGAGCAGTTTATTCGGGAAGGGCGAGCCCTTGCGGTACTTGAAGGCAAAACCGGGCAGAAACACGCGGTCGAAGAACCCCTTGAg < 2:149101/149‑1 (MQ=255) acccaccGGTAGTACCACGGCGGCGTGTCCATGGTCACCAGTAGGTGAGCCGTGCGGCCCTTGAGCAGTTTATTCGGGAAGGGCGAGCCCTTGCGGTACTTGAAGGCAAAACCGGGCAGAAACACGCGGTCgaaga > 2:61566/1‑136 (MQ=255) acccaccGGTAGTACCACGGCGGCGTGTCCATGGTCACCAGTAGGTGAGCCGTGCGGCCCTTGAGCAGTTTATTCGGGAAGGGCGAGCCCTTGCGGTACTTGAAGGCAAAACCGGGCAGAAACACGCGGTCgaaga < 1:61566/136‑1 (MQ=255) ccaccGGTAGTACCACGGCGGCGTGTCCATGGTCACCAGTAGGTGAGCCGTGCGGCCCTTGAGCAGTTTATTCGGGAAGGGCGAGCCCTTGCGGTACTTGAAGGCAAAACCGGGCAGAAACAcgcg < 5:47140/126‑1 (MQ=255) ccaccGGTAGTACCACGGCGGCGTGTCCATGGTCACCAGTAGGTGAGCCGTGCGGCCCTTGAGCAGTTTATTCGGGAAGGGCGAGCCCTTGCGGTACTTGAAGGCAAAACCGGGCAGAAACACGCGGTCGAAGAACCCCTTGAGCAACg > 1:210976/1‑149 (MQ=255) ccaccGGTAGTACCACGGCGGCGTGTCCATGGTCACCAGTAGGTGAGCCGTGCGGCCCTTGAGCAGTTTATTCGGGAAGGGCGAGCCCTTGCGGTACTTGAAGGCAAAACCGGGAAGAAACAcgcg > 6:47140/1‑126 (MQ=255) cACGGCGGCGTGTCCATGGTCACCAGTAGGTGAGCCGTGCGGCCCTTGAGCAGTTTATCCGGGAAGGGCGAGCCCTTGCGGTACTTGAAGGCAAAACCGGGCAGAAACACGCGGTCGAAGAACCCCTTGAGCAACGCCGGAATgccgcc > 3:177508/1‑149 (MQ=255) cggcggCGTG‑CCATGGTCACCAGTAGGTGAGCCGTGCGGCCCTTGAGCAGTTTATTCGGGAAGGGCGAGCCCTTGCGGTACTTGAAGGCAAAACCGGGCAGAAACACGCGGTCGAAGAACCCCTTGAGCAACGCCGGAATGCCGCCcca > 6:59579/1‑149 (MQ=255) gcggcgTGTCCATGGTCACCAGTAGGTGAGCCGTGCGGCCCTTGAGCAGTTTATTCGGGAAGGGCGAGCCCTTGCGGTACTTGAAGGCAAAACCGGGCAGAAACACGCGGTCGAAGAACCCCTTGAGCAACGCCGGAATGCCGCCccac < 7:205276/149‑1 (MQ=255) cggcgTGTCCATGGTCACCAGTAGGTGAGCCGTGCGGCCCTTGAGCAGTTTATTCGGGAAGGGCGAGCCCTTGCGGTACTTGAAGGCAAAACCGGGCAGAAACACGCGGTCGAAGAACCCCTTGAGCAACGCCGGAATGCCGCCccacc < 2:210976/149‑1 (MQ=255) tgtCCATGGTCACCAGTAGGTGAGCCGTGCGGCCCTTGAGCAGTTTATTCGGGAAGGGCGAGCCCTTGCGGTACTTGAAGGCAAAACCGGGCAGAAACACGCGGTCGAAGAACCCCTTGAGCAACGCCGGAATGCCGCCccac > 7:138917/1‑143 (MQ=255) aTGGTCACCAGTAGGTGAGCCGTGCGGCCCTTGAGCAGTTTATCCGGGAAGGGCGAGCCCTTGCGGTACTTGAAGGCAAAACCGGGCAGAAACACGCGGTCGAAGAACCCCTTGAGCAACGCCGGAATGCCGCCCCACCAGATCGGGTa < 4:177508/149‑1 (MQ=255) ggTCACCAGTAGGTGAGCCGTGCGGCCCTTGAGCAGTTTATTCGGGAAGGGCGAGCCCTTGCGGTACTTGAAGGCAAAACCGGGCAGAAACACGCGGTCGAAGAACCCCTTGAGCAACGCCGGAATGCCGCCCCACCAGATCGGGTaca > 2:131739/1‑149 (MQ=255) gTCACCAGTAGGTGAGCCGTGCGGCCCTTGAGCAGTTTATTCGGGAAGGGCGAGCCCTTGCGGTACTTGAAGGCAAAACCGGGCAGAAACACGCGGTCGAAGAACCCCTTGAGCAACGCCGGAATGCCGCCCCACCAGATCGGGTacac > 7:99172/1‑149 (MQ=255) aCCAGTAGGTGAGCCGTGCGGCCCTTCATCAGTTTATTCGGGAAGGGCGAGCCGTTGCGGTACTTGAATGCAAAACCGGGCAGAAACACGCGGTCGAAGAACCCCTTGAGCAACGCCGGAATGCCGCCCCACCAGATCGGGTacac < 5:175828/146‑1 (MQ=255) aGTAGGTGAGCCGTGCGGCCCTTGAGCAGTTTATTCGGGAAGGGCGAGCCCTTGCGGTACTTGAAGGCAAAACCGGGCAGAAACACGCGGTCGAAGAACCCCTTGAGCAACGCCGGAATGCCGCCCCACCAGATCGGGTACACCAATGt < 8:99172/149‑1 (MQ=255) ggTGAGCCGTGCGGCCCTTGAGCAGTTTATCCGGGAAGGGCGAGCCCTTGCGGTACTTGAAGGCAAAACCGGGCAGAAACACGCGGTCGAAGAAc < 5:38637/95‑1 (MQ=255) ggTGAGCCGTGCGGCCCTTGAGCAGTTTATCCGGGAAGGGCGAGCCCTTGCGGTACTTGAAGGCAAAACCGGGCAGAAACACGCGCTCGAAGAAc > 6:38637/1‑95 (MQ=255) cccTTGAGCAGTTTATTCGGGAAGGGCGAGCCCTTGCGGTACTTGAAGGCAAAACCGGGCAGAAACACGCGGTCGAAGAACCCCTTGAGCAACGCCGGAATGCCGCCCCACCAGATCggg > 2:93765/1‑120 (MQ=255) cccTTGAGCAGTTTATTCGGGAAGGGCGAGCCCTTGCGGTACTTGAAGGCAAAACCGGGCAGAAACACGCGGTCGAAGAACCCCTTGAGCAACGCCGGAATGCCGCCCCACCAGATCggg < 1:93765/120‑1 (MQ=255) tGAGCAGTTTATTCGGGAAGGGCGAGCCCTTGCGGTACTTGAAGGCAAAACCGGGCAGAAACACGCGGTCGAAGAACCCCTTGAGCAACGCCGGAATGCCGCCCCACCAGATCGGGTACACCAATGTCAGGTGTTCGGCCCAGGTAATg > 2:108250/1‑149 (MQ=255) gTTTATTCGGGAAGGGCGAGCCCTTGCGGTACTTGAAGGCAAAACCGGGCAGAAACACGCGGTCGAAGAACCCCTTGAGCAACGCCGGAATGCCGCCCCACCAGATCGGGTACACCAATCTCAGGTGTTCGGCCCAGGTAATGTCGTTc > 2:54985/1‑149 (MQ=255) tATTCGGGAAGGGCGAGCCCTTGCGGTACTTGAAGGCAAAACCGGGCAGAAACACGCGGTCGAAGAACCCCTTGAGCAACGCCGGAATGCCGCCCCACCAGATCGGGTACACCAATGTCAGGTGTTCGGCCCAGGTAATGTCGTTCtgt > 6:221711/1‑149 (MQ=255) | GTTTTCAGGGGTTTTATGCCGCAGAACTCCAGGGTGGTCTTGCGCATTTGGTGCAGGCCCGGCATGCGATACACCCACCGGTAGTACCACGGCGGCGTGTCCATGGTCACCAGTAGGTGAGCCGTGCGGCCCTTGAGCAGTTTATCCGGGAAGGGCGAGCCCTTGCGGTACTTGAAGGCAAAACCGGGCAGAAACACGCGGTCGAAGAACCCCTTGAGCAACGCCGGAATGCCGCCCCACCAGATCGGGTACACCAATGTCAGGTGTTCGGCCCAGGTAATGTCGTTCTGT > NC_002947/3178011‑3178301 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |