Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,304,763 | A→G | 11.3% | intergenic (+16/+16) | cysS → / ← PP_2906 | cysteine‑‑tRNA ligase/sensor histidine kinase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,304,763 | 0 | A | G | 11.3% | 111.3 / 4.3 | 44 | intergenic (+16/+16) | cysS/PP_2906 | cysteine‑‑tRNA ligase/sensor histidine kinase |
Reads supporting (aligned to +/- strand): ref base A (21/18); new base G (2/3); total (23/21) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.58e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.72e-01 |
CCAGGCGCGCCTGAAGGCGCGTGCGGACAAGAACTGGGCTGAGTCTGACCGCATTCGCGATCAGCTGACCGCCATGGGTGTAGTGCTGGAGGACAGCAAGGGCACGACTACCTGGCGTCTGGCTGACTGAAGTAACTGGGGCTGCACCGCAGCCCCAGCTTTTATTTGCTTAGACCCGCAAGCGGGCAGTGCAATACCAGCCTGGCCCCACCCAACTCGCTTCCCCCAATCTCCAGCCCGAAACCATGCAGGTCGACGATCGCCGCCACGATCGACAACCCCAGCCCGAAGCCG > NC_002947/3304618‑3304911 | ccAGGCGCGCCTGAAGGCGCGTGCGGACAAGAACTGGGCTGAGTCTGACCGCATTCGCGATCAGCTGACCGCCATGGGTGTAGTGCTGGAGGACAGCAAGGGCACGAGTACCTGGCGTCTGGCTGAATGAAGTAACTGGGGCTGCACCg > 5:131233/1‑149 (MQ=255) cgcacgcgcCTTCAGGCGCGTGCGGACAAGAACTGGGCTGAGTCTGACCGCATTCGCGATCAGCTGACCGCCATGGGTGTAGTGCTGGAGGACAGCAAGGGCACGACTACCTGGCGTCTGGCTGACTGAAGTAACTGGGGCTGCACCg > 4:103437/5‑148 (MQ=255) gcacgcgcCTTCAGGCGCGTGCGGACAAGAACTGGGCTGAGTCTGACCGCATTCGCGATCAGCTGACCGCCATGGGTGTAGTGCTGGAGGACAGCAAGGGCACGACTACCTGGCGTCTGGCTGACTGAAGTAACTGGGGCTGCACCGCa < 3:103437/146‑1 (MQ=255) ccTGAAGGCGCGTGCGGACAAGAACTGGGCTGAGTCTGACCGCATTCGCGATCAGCTGACCGCCATGGGTGTAGTGCTGGAGGACAGCAAGGGCACGACTACCTGGCGTCTGGCTGACTGAAGTAACTGGGGCTGCGGTGCAGCCCCAg < 4:137793/149‑1 (MQ=255) cTGAAGGCGCGTGCGGACAAGAACTGGGCTGAGTCTGACCGCATTCGCGATCAGCTGACCGCCATGGGTGTAGTGCTGGAGGACAGCAAGGGCACGACTACCTGGCGTCTGGCTGACTGAAGTAACTGGGGCTGCAcc < 8:21986/138‑1 (MQ=255) cTGAAGGCGCGTGCGGACAAGAACTGGGCTGAGTCTGACCGCATTCGCGATCAGCTGACCGCCATGGGTGTAGTGCTGGAGGACAGCAAGGGCACGACTACCTGGCGTCTGGCTGACTGAAGTAACTGGGGCTGCAcc > 7:21986/1‑138 (MQ=255) aGGCGCGTGCGGACAAGAACTGGGCTGAGTCTGACCGCATTCGCGATCAGCTGACCGCCATGGGTGTAGTGCTGGAGGACAGCAAGGGCACGACTACCTGGCGTCTGGCTGACTGAAGTAACTGGGGCTGCACCGCAGCCCCAGCtttt < 7:66812/149‑1 (MQ=255) aaGAACTGGGCTGAGTCTGACCGCATTCGCGATCAGCTGACCGCCATGGGTGTAGTGCTGGAGGACAGCAAGGGCACGACTACCTGGCGTCTGGCTGACTGAAGTAACTGGGGCTGCGGTGCAGCCCCa > 4:237955/1‑129 (MQ=255) aaGAACTGGGCTGAGTCTGACCGCATTCGCGATCAGCTGACCGCCATGGGTGTAGTGCTGGAGGACAGCAAGGGCACGACTACCTGGCGTCTGGCTGACTGAAGTAACTGGGGCTGCGGTGCAGCCCCa < 3:237955/129‑1 (MQ=255) aaGAACTGGGCTGAGTCTGACCGCATTCGCGATCAGCTGACCGCCATGGGTGTAGTGCTGGAGGACAGCAAGGGCACGACTACCTGGCGTCTGGCTGACTGAAGTAACTGGGGCTGCACCGCAGCCCCAGCTTTTATTTGCTTAGAccc > 2:37568/1‑149 (MQ=255) aaGAACTGGGCTGAGTCTGACCGCATTCGCGATCAGCTGACCGCCATGGGTGTAGTGCTGGAGGACAGCAAGGGCACGACTACCTGGCGTCTGGCTGACTGAAGTAACTGGGGCTGCACCGCAGCCCCAGCTTTTATTTGCTTAGAccc < 4:134644/149‑1 (MQ=255) aaGAACTGGGCTGAGTCTGACCGCATTCGCGATCAGCTGACCGCCATGGGTGTAGTGCTGGAGGACAGCAAGGGCACGACTACCTGGCGTCTGGCTGACTGAAGTAACTGGGGCTGCACCGCAGCCCCAGCTTTTATTTGCTTAGAccc < 2:74819/149‑1 (MQ=255) cTGGGCTGAGTCTGACCGCATTCGCGATCAGCTGACCGCCATGGGTGTAGTGCTGGAGGACAGCAAGGCCACGACTACCTGGCGTCTGGCTGACTGAAGTAACTGGGGCTGCACCGCAGCCCCAGCTTTTATTTGCTTAGACCCGCAAg > 5:13315/1‑149 (MQ=255) tCTTACCCCATTCGCGATAAGCTGACCCCCAAGGGTGTTGTGGGGGAGGGCAGCAAGGGGACGACAACCTGGCGTGTGGCTGACTGAAGTAACTGGGGCTGCACCGCCGCCCCAGCGTTTTTTTTCTTATACCCCCAACCGGGCAggg > 2:211266/1‑146 (MQ=255) gACCGCATTCGCGATCAGCTGACCGCCATGGGTGTAGTGCTGGAGGACAGCAAGGGCACGACTACCTGGCGTCTGGCTGACTGAAGTAACTGGGGCTGCGGTGCAGCCCCa < 2:252631/111‑1 (MQ=255) gACCGCATTCGCGATCAGCTGACCGCCATGGGTGTAGTGCTGGAGGACAGCAAGGGCACGACTACCTGGCGTCTGGCTGACTGAAGTAACTGGGGCTGCGGTGCAGCCCCa > 1:252631/1‑111 (MQ=255) gcgATCAGCTGACCGCCATGGGTGTAGTGCTGGAGGACAGCAAGGGCACGACTACCTGGCGTCTGGCTGACTGAAGTAACTGGGGCTGCACCGCAGCCCCAGCTTTTATTTGCTTAGACCCGCAAGCGGGCAGTGCAATACCAGCCTgg > 7:169901/1‑149 (MQ=255) cgATCAGCTGACCGCCATGGGTGTAGTGCTGGAGGACAGCAAGGGCACGACTACCTGGCGTCTGGCTGACTGAAGTAACTGGGGCTGCACCGCAGCCCCAGCTTTTATTTGCTTAGACCCGCAAGCGGGCAGTGCAATACCAGCCTGGc < 1:37568/149‑1 (MQ=255) aGCTGACCCCCATGGGTGTAGTGCTGGAGGACAGCAAGCGCACGACTACCTGGCGTCTGGATGACTGAAGCAACTGCGGCTGCACCGCAGCACCAGCTTATAATTGCTTAGACCCGCAAGCGCCCACTGCAATACCAGCCTGCCcccac > 1:128883/1‑149 (MQ=255) aTGGGTGTAGTGCTGGAGGACAGCAAGGGCACGACTACCTGGCGTCTGGCTGACTGAAGTAACTGGGGCTGCACCGCAGCCCCAGCTTTTATTTGCTTAGACCCGCAAGCGGGCAGTGCAATACCAGCCTGGCCCCACCCAACTCGCtt < 1:211266/149‑1 (MQ=255) ggTGTAGTGCTGGAGGACAGCAAGGGCACGACTACCTGGCGTCTGGCTGACTGAAGTAACTGGGGCTGCACCGCAGCCCCAGCTTTTATTTGCTTAGACCCGCAAGCGGGCAGTGCAATACCAGCCTGGCCCCACCCAACTCGCTTcc > 8:73621/1‑148 (MQ=255) ggTGTAGTGCTGGAGGACAGCAAGGGCACGACTACCTGGCGTCTGGCTGACTGAAGTAACTGGGGCTGCACCGCAGCCCCAGCTTTTATTTGCTTAGACCCGCAAGCGGGCAGTGCAATACCAGCCTGGCCCCACCCAACTCGCTTcc < 7:73621/148‑1 (MQ=255) tgtAGTGCTGGAGGACAGCAAGGGCACGACTACCTGGCGTCTGGCTGACTGAAGTAACTGGGGCTGCACCGCAGCCCCAGCTTTTATTTGCTTAGACCCGCAAGCGGGCAGTGCAATACCAGCCTGGCCCCACCCAACTCGCTTcccc > 1:243236/1‑148 (MQ=255) tAGTGCTGGAGGACAGCAAGGGCACGACTACCTGGCGTCTGGCTGACTGAAGTAACTGGGGCTGCACCGCAGCCCCAGCTTTTATTTGCTTAGACCCGCAAGCGGGCAGTGCAATACCAGCCTGGCCCCACCCAACTCGCtt < 2:37970/142‑1 (MQ=255) tAGTGCTGGAGGACAGCAAGGGCACGACTACCTGGCGTCTGGCTGACTGAAGTAACTGGGGCTGCACCGCAGCCCCAGCTTTTATTTGCTTAGACCCGCAAGCGGGCAGTGCAATACCAGCCTGGCCCCACCCAACTCGCtt > 1:37970/1‑142 (MQ=255) cTGGAGGACTGCAAGGGCACGTCTTCCTGGCGTCTGGCTGACTGAAGCAACTGGGGCTGCACCGCAGCGCCAGCTTTTATTTGCTTAGACCCGCAAGCGGGCAGTGCAATACCAGCCTGGCCCCACCCAACTGGCTTCCACCAAtctc < 2:128883/148‑1 (MQ=255) aCAGCAAGGGCACGACTACCTGGCGTCTGGCTGACTGAAGTAACTGGGGCTGCACCGCAGCCCCAGCTTTTATTTGCTTAGACCCGCAAGCGGGCAGTGCAATACCAGCCTGGCCCCACCCAACTCGCTTCCCCCAATCTCCAGCCCg > 8:67046/1‑148 (MQ=255) cAGCAAGGGCACGACTACCTGGCGTCTGGCTGACTGAAGTAACTGGGGCTGCACCGCAGCCCCAGCTTTTATTTGCTTAGACCCGCAAGCGGGCAGTGCAATACCAGCCTGGCCCCACCCAACTCGCTTCCCCCAATCTCCAGCCCGa > 3:323/1‑148 (MQ=255) cAAGGGCACGACTACCTGGCGTCTGGCTGACTGAAGTAACTGGGGCTGCACCGCAGCCCCAGCTTTTATTTGCTTAGACCCGCAAGCGGGCAGTGCAATACCAGCCTGGCCCCACCCAACTCGCTTCCCCCAATCTCCAGCCCGAAAc > 3:98419/1‑148 (MQ=255) aGGGCACGACTACCTGGCGTCTGGCTGACTGAAGTAACTGGGGCTGCACCGCAGCCCCAGCTTTTATTTGCTTAGACCCGCAAGCGGGCAGTGCAATACCAGCCTGGCCCCACCCAACTCGCTTCCCCCAATCTCCAGCCCGAAACCAt > 6:211932/1‑149 (MQ=255) gggCACGACTACCTGGCGTCTGGCTGACTGAAGTAACTGGGGCTGCACCGCAGCCCCAGCTTTTATTTGCTTAGACCCGCAAGCGGGCAGTGCAATACCAGCCTGGCCCCACCCAACTCGCTTCCCCCAATCTCCAGCCCGAAACCATg < 7:98292/149‑1 (MQ=255) gggCACGACTACCTGGCGTCTGGCTGACTGAAGTAACTGGGGCTGCACCGCAGCCCCAGCTTTTATTTGCTTAGACCCGCAAGCGGGCAGTGCAATACCAGCCTGGCCCCACCCAACTCGCTTCCCCCAATCTCCAGCCCGAAACCATg > 2:17253/1‑149 (MQ=255) tACCTGGCGTCTGGCTGACTGAAGTAACTGGGGCTGCACCGCAGCCCCAGCTTTTATTTGCTTAGACCCGCAAGCGGGCAGTGCAATACCAGCCTGGCCCCACCCAACTCGCTTCCCCCAATCTCCAGCCCGAAACCATGCAGGTcgac < 7:67046/149‑1 (MQ=255) gCTGACTGAAGTAACTGGGGCTGCACCGCAGCCCCAGCTTTTATTTGCTTAGACCCGCAAGCGGGCAGTGCAATACCAGCCTGGCCCCACCCAACTCGCTTCCCCCAATCTCTAGCCCGAAACCATGCAGGt < 3:61311/132‑1 (MQ=255) gCTGACTGAAGTAACTGGGGCTGCACCGCAGCCCCAGCTTTTATTTGCTTAGACCCGCAAGCGGGCAGTGCAATACCAGCCTGGCCCCACCCAACTCGCTTCCCCCAATCTCTAGCCCGAAACCATGCAGGt < 3:57676/132‑1 (MQ=255) gCTGACTGAAGTAACTGGGGCTGCACCGCAGCCCCAGCTTTTATTTGCTTAGACCCGCAAGCGGGCAGTGCAATACCAGCCTGGCCCCACCCAACTCGCTTCCCCCAATCTCCAGCCCGAAACCATGCAGGTCGACGATCGCCGCCa < 6:13315/147‑1 (MQ=255) gCTGACTGAAGTAACTGGGGCTGCACCGCAGCCCCAGCTTTTATTTGCTTAGACCCGCAAGCGGGCAGTGCAATACCAGCCTGGCCCCACCCAACTCGCTTCCCCCAATCTCAAGCCCGAAACCATGCAGGt > 4:61311/1‑132 (MQ=255) gCTGACTGAAGTAACTGGGGCTGCACCGCAGCCCCAGCTTTTATTTGCTTAGACCCGCAAGCGGGCAGTGCAATACAAGCCTGGCCCCACCCAACTCGCTTCCCCCAATCTCAAGCCCGAAAACATGCAGGt > 4:57676/1‑132 (MQ=255) actgaAGTAACTGGGGCTGCACCGCAGCCCCAGCTTTTATTTGCTTAGACCCGCAAGCGGGCAGTGCAATACCAGCCTGGCCCCACCCAACTCGCTTCCCCCAATCTCCAGCCCGAAACCTTGCAGGTCGACGATCGCCGCCACGAt < 4:98419/147‑1 (MQ=255) ctgaAGTAACTGGGGCTGCACCGCAGCCCCAGCTTTTATTTGCTTAGACCCGCAAGCGGGCAGTGCAATACCAGCCTGGCCCCACCCAACTCGCTTCCCCCAATCTCCAGCCCGAAACCATGCAGGTCGACGATCGCCGCCACGATCg < 4:323/148‑1 (MQ=255) tgaAGTAACTGGGGCTGCACCGCAGCCCCAGCTTTTATTTGCTTAGACCCGCAAGCGGGCAGTGCAATACCAGCCTGGCCCCACCCAACTCGCTTCCCCCAATCTCCAGCCCGAAACCATGCAGGTCGACGATCGCCGCCACGATCGa > 5:2533/1‑148 (MQ=255) tgaAGTAACTGGGGCTGCACCGCAGCCCCAGCTTTTATTTGCTTAGACCCGCAAGCGGGCAGTGCAATACCAGCCTGGCCCCACCCAACTCGCTTCCCCCAATCTCCAGCCCGAAACCATGCAGGTCGACGATCGCCGCCACGATCGa > 3:62905/1‑148 (MQ=255) gCACCGCAGCCCCAGCTTTTATTTGCTTAGACCCGCAAGCGGGCAGTGCAATACCAGCCTGGCCCCACCCAACTCGCTTCCCCCAATCTCCAGCCCGAAACCATGCAGGTCGACGATCGCCGCCACGATCGACAACCCCAGCCCGAAGc > 2:87577/1‑149 (MQ=255) cACCGCAGCCCCAGCTTTTATTTGCTTAGACCCGCAAGCGGGCAGTGCAATACCAGCCTGGCCCCACCCAACTCACTTCCCCCAATCTCCAGCCCGAAACCATGCAGGTCGACGATCGCCGCCACGATCGACAACCCCAGCCCGAAGc < 8:169901/148‑1 (MQ=255) aCCGCAGCCCCAGCTTTTATTTGCTTAGACCCGCAAGCGGGCAGTGCAATACCAGCCTGGCCCCACCCAACTCGCTTCCCCCAATCTCCAGCCCGAAACCATGCAGGTCGACGATCGCCGCCACGATCGACAACCCCAGCCCGAAGCCg > 6:52092/1‑149 (MQ=255) | CCAGGCGCGCCTGAAGGCGCGTGCGGACAAGAACTGGGCTGAGTCTGACCGCATTCGCGATCAGCTGACCGCCATGGGTGTAGTGCTGGAGGACAGCAAGGGCACGACTACCTGGCGTCTGGCTGACTGAAGTAACTGGGGCTGCACCGCAGCCCCAGCTTTTATTTGCTTAGACCCGCAAGCGGGCAGTGCAATACCAGCCTGGCCCCACCCAACTCGCTTCCCCCAATCTCCAGCCCGAAACCATGCAGGTCGACGATCGCCGCCACGATCGACAACCCCAGCCCGAAGCCG > NC_002947/3304618‑3304911 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |