Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,352,093 | G→A | 7.9% | E119K (GAA→AAA) | PP_2947 → | transcriptional regulator MvaT |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,352,093 | 0 | G | A | 7.9% | 139.1 / 2.4 | 51 | E119K (GAA→AAA) | PP_2947 | transcriptional regulator MvaT |
Reads supporting (aligned to +/- strand): ref base G (24/22); new base A (2/2); total (27/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.16e-01 |
TACAGAGAAAGCCCCACGCCGTGCCCGGCAAGTGAAGCAGTACAAGAACCCGCATAATGGAGAGGTCATCGAGACCAAGGGTGGCAACCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGG‑CAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGG > NC_002947/3351957‑3352240 | tACAGAGAAAGCCCCACGCCGTGCCCGGCAAGTGAAGCAGTACAAGAACCCGCATAATGGAGAGGTCATCGAGACCAAGGGTGGCAACCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGG‑CAGAAGAAGTGGAATCCTGGgtgt > 6:194724/1‑149 (MQ=255) tACAGAGAAAGCCCCACGCCGTGCCCGGCAAGTGAAGCAGTACAAGAACCCGCATAATGGAGAGGTCATCGAGACCAAGGGTGGCAACCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGG‑CAGAAGAAGTGGAATCCTGGgtgt > 2:198835/1‑149 (MQ=255) gaAAGCCCCACGCCTTGCCCGGCAAGTGAAGCAGTACAAGAACCCGCATAATGGAGAGGTCATCGAGACCAAGGGTGGCAACCACAAGCTGCTCAAGGAATGGATAGCCCAGTACGGGG‑CAGAAGAAGTGGAATCCTGGGTGTCCTGa < 3:261440/148‑1 (MQ=255) aaaGCCCCACGCCGTGCCCGGCAAGTGAAGCAGTACAAGAACCCGCATAATGGAGAGGTCATCGAGACCAAGGGTGGCAACCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGG‑CAGAAGAAGTGGAATCCTGGGTGTCCTGAtt > 4:68909/1‑149 (MQ=255) aaGCCCCACGCCGTGCCCGGCAAGTGAAGCAGTACAAGAACCCGCATAATGGAGAGGTCATCGAGACCAAGGGTGGCAACCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGG‑CAGAAGAAGTGGAATCCTGGGTGTCCTGAttt < 5:194724/149‑1 (MQ=255) gCCCCACGCCGTGCCCGGCAAGTGAAGCAGTACAAGAACCCGCATAATGGAGAGGTCATCGAGACCAAGGGTGGCAACCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGG‑CAGAAGAAGTGGAATCCTGGGTGTCCTGATTtgt < 3:112737/149‑1 (MQ=255) ccccACGCCGTGCCCGGCAAGTGAAGCAGTACAAGAACCCGCATAATGGAGAGGTCATCGAGACCAAGGGTGGCAACCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGG‑CAGAAGAAGTGGAATCCTGGGTGTCATGATTtgtg > 2:198787/1‑149 (MQ=255) cccAAGCCGTGCCCTTCAAGTGAAGCAGTACAAGAACCCGCATAATGGAGAGGTCATCGAGACCAAGGGTGGCAAGCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGTGG‑CAGAAGAAGTGGAATCCTTGGTGTCCTGATTTGTGc < 4:81090/149‑1 (MQ=255) gCAAGTGAAGCATTACAAGAACCCGCATAATGGAGAGGTCATCGAGACCAAGGGTGGCAACCACAAGCTGCTCAATGAATGGAAAGCCCAGTACGGGGCCAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCa < 1:198787/149‑1 (MQ=255) aaGCAGTACAAGAACCCGCATAATGGAGAGGTCATCGAGACCAAGGGTGGCAACCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGG‑CAGAAGAAGTGGAATCCTGGGTGTcc > 3:137397/1‑117 (MQ=255) aaGCAGTACAAGAACCCGCATAATGGAGAGGTCATCGAGACCAAGGGTGGCAACCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGG‑CAGAAGAAGTGGAATCCTGGGTGTcc < 4:137397/117‑1 (MQ=255) cAGTACAAGAACCCGCATAATGGAGAGGTCATCGAGACCAAGGGTGGCAACCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGG‑CAGAAGAAGTGAAATCCTGGGTATCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCt > 7:6149/1‑149 (MQ=255) cAGTACAAGAACCCGCATAATGGAGAGGTCATCGAGACCAAGGGTGGCAACCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGG‑CAGAAGAAGTGAAATCCTGGGTATCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCt > 7:10207/1‑149 (MQ=255) aaGAACCCGCATAATGGAGAGGTCATCGAGACCAAGGGTGGCAACCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGG‑CAGAAGAAGTGGAATCCTGGgt < 3:76670/104‑1 (MQ=255) aaGAACCCGCATAATGGAGAGGTCATCGAGACCAAGGGTGGCAACCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGG‑CAGAAGAAGTGGAATCCTGGgt > 4:76670/1‑104 (MQ=255) ccGCATAATGGAGAGGTCATCGAGACCAAGGGTGGCAACCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGG‑CAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGt > 8:159358/1‑149 (MQ=255) gCATAATGGAGAGGTCATCGAGACCAAGGGTGGCAACCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGG‑CAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCGCTCATTGCGCTATCTGAAACGCCTTGTTc > 8:188257/1‑149 (MQ=255) aaTGGAGAGGTCATCGAGACCAAGGGTGGCAACCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGG‑CAGAAGAAGTGGAATCCTg > 8:221964/1‑89 (MQ=255) tCATCGAGACCAAGGGTGGCAACCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGG‑CAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCt > 1:174540/1‑130 (MQ=255) tCATCGAGACCAAGGGTGGCAACCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGG‑CAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCt < 2:174540/130‑1 (MQ=255) tCATCGAGACCAAGGGTGGCAACCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGG‑CAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGc < 3:155394/149‑1 (MQ=255) cAAGGGTGGCAACCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGG‑CAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCg > 3:87480/1‑149 (MQ=255) cAAGGGTGGCAACCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGG‑CAGAAGAAGTGCAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCACTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCg > 1:31647/1‑149 (MQ=255) gggTGGAAACCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGG‑CAGAAGAAGTGGAATCCTGGGTGTAATGATTTGTGCTGATGTATCCCTCATTGCGCTATCTGAAACGACTTGTTCTATTTCTAGGAATCGAAAGCGTCGcct > 3:139746/1‑149 (MQ=255) gCAACCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGG‑CAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAGGCGACGCTGTCGCttcctc < 3:68909/148‑1 (MQ=255) ccACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGG‑CAGAAGAAGTGAAATCCTGGGTATCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAGGCGACGCTGTCGCTTCCTCGaaaa < 8:6149/149‑2 (MQ=255) ccACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGG‑CAGAAGAAGTGAAATCCTGGGTATCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAGGCGACGCTGTCGCTTCCTCGaaaa < 8:10207/149‑2 (MQ=255) cacaAGCTGCTCAAGGAATGGAAAGCCCAGTACGGTG‑CAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGcc < 6:232442/106‑1 (MQ=255) cacaAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGG‑CAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGcc > 5:232442/1‑106 (MQ=255) caAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGG‑CAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAATGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAgg < 1:198835/149‑1 (MQ=255) caAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGG‑CAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCACCCTCATTGCGCTATCTGAAACGCCTTGTTCttt < 6:202631/113‑1 (MQ=255) caAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGG‑CAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCACCCTCATTGCGCTATCTGAAACGCCTTGTTCttt > 5:202631/1‑113 (MQ=255) ctCAAGGAATGGAAAGCCCAGTACGGGG‑CAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGaaa < 5:232237/138‑1 (MQ=255) ctCAAGGAATGGAAAGCCCAGTACGGGG‑CAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGaaa > 6:232237/1‑138 (MQ=255) ggAATGGAAAGCCCAGTACGGGG‑CAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCgtg > 7:119367/1‑149 (MQ=255) ggAATGGAAAGCCCAGTACGGGG‑CAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCgtg > 8:185391/1‑149 (MQ=255) gAATGGAAAGCCCAGTACGGGG‑CAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCgtgg < 7:185391/149‑1 (MQ=255) ggAAAGCCCAGTACGGGG‑CAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCg < 5:33895/135‑1 (MQ=255) ggAAAGCCCAGTACGGGG‑CAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCg > 6:33895/1‑135 (MQ=255) gAAAGCCCAGTACGGGG‑CAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGtgggtggg > 7:139930/1‑149 (MQ=255) gAAAGCCCAGTACGGGG‑CAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGtgggtggg < 7:159358/149‑1 (MQ=255) aaGCCCAGTACGGTG‑GAGAAGAAGTGGAATCGTTGGTGTTCTGATTTGTGCTTATGTCTCCTTCATTGCGCTATATGAAACTGCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAATCATTGGGTTCATCGTGGGTGGGc < 4:139746/148‑1 (MQ=255) aaGCCCAGTACGGGG‑CAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCACTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGc < 2:31647/148‑1 (MQ=255) ccAGTACGGGG‑CAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCTTTCATATTGGGTGGGCGGAAt > 7:202266/1‑149 (MQ=255) ccAGTACGGGG‑CAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAAt < 8:119367/149‑1 (MQ=255) agaagaAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCg < 8:9486/133‑1 (MQ=255) agaagaAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCg > 7:9486/1‑133 (MQ=255) agaagaAGTGGAATCCTGGCTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTgg > 2:40043/1‑149 (MQ=255) aagaagTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGt > 7:128229/1‑148 (MQ=255) gTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACa < 8:128229/149‑1 (MQ=255) tGGAATCCTGGCTGTCCTGATTTGTGCTGATGACGCCATCAATGCGATATCTTAAACCCCTTCTTCTTTTTAGACGAAGCGAAAGATTCGCCTCCTCGAAACAGGGCGTTAATCGTGCGTGGGCGGAATCAGCTTACGATGTTAAACAg > 2:183416/1‑149 (MQ=255) gAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCgg > 6:31389/1‑124 (MQ=255) gAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCgg < 5:31389/124‑1 (MQ=255) gAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAgg < 8:139930/148‑1 (MQ=255) | TACAGAGAAAGCCCCACGCCGTGCCCGGCAAGTGAAGCAGTACAAGAACCCGCATAATGGAGAGGTCATCGAGACCAAGGGTGGCAACCACAAGCTGCTCAAGGAATGGAAAGCCCAGTACGGGG‑CAGAAGAAGTGGAATCCTGGGTGTCCTGATTTGTGCTGATGTCGCCCTCATTGCGCTATCTGAAACGCCTTGTTCTTTTTCGAGGAAGCGACAGCGTCGCCTCCTCGAAACAGGGCGTTCATCGTGGGTGGGCGGAATGAGCTGACGTGGTTAAACAGG > NC_002947/3351957‑3352240 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |