Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,424,890 | C→G | 8.1% | intergenic (+478/‑34) | PP_3039 → / → PP_3040 | hypothetical protein/holin |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,424,890 | 0 | C | G | 8.1% | 145.0 / 2.2 | 48 | intergenic (+478/‑34) | PP_3039/PP_3040 | hypothetical protein/holin |
Reads supporting (aligned to +/- strand): ref base C (25/19); new base G (2/2); total (27/21) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.10e-01 |
ATTCAACAGACATTCCCCGGACGTTTACCACTTATTGCCGGGTGGCATTAAAACTCGCTTGCTGCCACCGGAATCGACCTGTAAAAAGTACCCATCTTCG‑A‑GACGTGCGGGCGCACAAAGCGGCCCGCCAAACACTGAAAACCCCGGCCCTGGCGCCGGGGTTTTTGCCTTTGGGGGATTCGATGAACAGCGAGCAGCAAGCGTTAGTTGAGATGCCAATCTGGTTGGTGATCTTCCTGTCCCTGGTCGGCGGGGTGTCAGGCGAGATGTGGCGGGCCGACATGGCCGGC > NC_002947/3424742‑3425031 | aTTCAACAGACATTCCCCGGACGTTTACCACTTATTGCCGGGTGGCATTAAAACTCGCTTGCTGCCACCGGAATCGACCTGTAAAAAGTACCCATCTTCG‑A‑GACGTGCGGGCGCACAAAGCGGCCCGCCAAACACTGAAAACCCCGGcc < 1:265524/149‑1 (MQ=255) aaCAGACATTCCCCGGACGTTTACCACTTATTGCCGGGTGGCATTAAAACTCGCTTGCTGCCACCGGAATCGACCTGTAAAAAGTACCCATCTTCG‑A‑GACGTGCGGGCGCACAAAGCGGCCCGCCAAACACTGAAAACCCCGGCCCt > 6:233270/1‑147 (MQ=255) aaCAGACATTCCCCGGACGTTTACCACTTATTGCCGGGTGGCATTAAAACTCGCTTGCTGCCACCGGAATCGACCTGTAAAAAGTACCCATCTTCG‑A‑GACGTGCGGGCGCACAAAGCGGCCCGCCAAACACTGAAAACCCCGGCCCTgg > 5:208046/1‑149 (MQ=255) aaCAGACATTCCCCGGACGTTTACCACTTATTGCCGGGTCGCATTAAAACTCGCTTGCTGCCACCGGAATCGACCTGTAAAAAGTACCCATCTTCG‑A‑GACGTGCGGGCGCACAAAGCGGCCCGCCAAACACTGAAAACCCCGGCCCt < 5:233270/147‑1 (MQ=255) cAGACATTCCCCGGACGTTTACCACTTATTGCCGGGTGGCATTAAAACTCGCTTGCTGCCACCGGAATCGACCTGTAAAAAGTACCCATCTTCG‑A‑GACGTGCGGGCGCACAAAGCGGCCCGCCAAACACTGAAAACCCCGGCCCTGgcg > 1:38117/1‑149 (MQ=255) aCATTCCCCGGACGTTTACCACTTATTGCCGGGTGGCATTAAAACTCGCTTGCTGCCACCGGAATCGACCTGTAAAAAGTACCCATCTTCG‑A‑GACGTGCGGGCGCACAAAGCGGCCAGCCAAACACTGAAAACCCCGGCCCTGGCGCCg > 5:60423/1‑149 (MQ=255) cccGGACGTTTACCACTTATTGCCGGGTGGCATTAAAACTCGCTTGCTGCCACCGGAATCGACCTGTAAAAAGTACCCATCTTCG‑A‑GACGTGCGGGCGCACAAAGCGGCCCGCCAAACACTGAAAACCCCGGCGCCAGGGCCGGGGtt < 8:252072/148‑1 (MQ=255) ggACGTTTACCACTTATTGCCGGGTGGCATTAAAACTCGCTTGCTGCCACCGGAATCGACCTGTAAAAAGTACCCATCTTCG‑A‑GACGTGCGGGCGCACAAAGCGGCCCGCCAAACACTGAAAACCCCGGCCCTGGCGCCGGGGTTTTTg > 3:142108/1‑149 (MQ=255) aCGTTTACCACTTATTGCCGGGTGGCATTAAAACTCGCTTGCTGCCACCGGAATCGACCTGTAAAAAGTACCCATCTTCG‑A‑GACGTGCGGGCGCACAAAGCGGCCCGCCAAACACTGAAAACCCCGGCCCTGGCGCCGGGGTTTTTGcc < 1:112622/149‑1 (MQ=255) aCCACTTATTGCCGGGTGGCATTAAAACTCGCTTGCTGCCACCGGAATCGACCTGTAAAAAGTACCCATCTTCG‑A‑GACGTGCGGGCGCACAAAGCGGCCCGCCAAACACTGAAAACCCCGGCCCTGGCGCCGGGGTTTTTGCCTTTgg < 4:142108/148‑1 (MQ=255) cACTTATTGCCGGGTGGCATTAAAACTCGCTTGCTGCCACCGGAATCGACCTGTAAAAAGTACCCATCTTCG‑A‑GACGTGCGGGCGCACAAAGCGGCCCGCCAAACACTGAAAACCCCGGCCCGGGCGCCGGGGttt > 4:91200/1‑136 (MQ=255) aCTTATTGCCGGGTGGCATTAAAACTCGCTTGCTGCCACCGGAATCGACCTGTAAAAAGTACCCATCTTCGTAGGACGTGCGGGCGCACAAAGCGGCCCGCCAAACACTGAAAACCCCGGCCCTGGCGCCGGGGTTTTTGCCTTTgggg > 1:218756/1‑149 (MQ=255) aCTTATTGCCGGGTGGCATTAAAACTCGCTTGCTGCCACCGGAATCGACCTGTAAAAAGTACCCATCTTCG‑A‑GACGTGCGGGCTCACAAAGCGGCCCGCCAAACACTGAAAACCCCGGCCCTGGCGCCGGGGttttt < 8:250024/137‑1 (MQ=255) aCTTATTGCCGGGTGGCATTAAAACTCGCTTGCTGCCACCGGAATCGACCTGTAAAAAGTACCCATCTTCG‑A‑GACGTGCGGGCGCACAAAGCGGCCCGCCAAACACTGAAAACCCCGGCCCTGGCGCCGGGGttttt > 7:250024/1‑137 (MQ=255) gggTGGCATTAAAACTCGCTTGCTGCCACCGGAATCGACCTGTAAAAAGTACCCATCTTCG‑A‑GACGTGCGGGCGCACAAAGCGGCCCGCCAAACACTGAAAACCCCGGCCCTGGCGCCGGGGTTTTTGCCTTTGGGGGATTCGATGAAc < 6:60423/149‑1 (MQ=255) aTTAAAACTCGCTTGCTGCCACCGGAATCGACCTGTAAAAAGTACCCATCTTCG‑A‑GACGTGCGGGCGCACAAAGCGGCCCGCCAAACACTGAAAACCCCGGCCCTGGCGCCGGGGTTTTTg > 2:203657/1‑121 (MQ=255) aTTAAAACTCGCTTGCTGCCACCGGAATCGACCTGTAAAAAGTACCCATCTTCG‑A‑GACGTGCGGGCGCACAAAGCGGCCCGCCAAACACTGAAAACCCCGGCCCTGGCGCCGGGGTTTTTg < 1:203657/121‑1 (MQ=255) aTTAAAACTCGCTTGCTGCCACCGGAATCGACCTGTAAAAAGTACCCATCTTCG‑A‑GACGTGCGGGCGCACAAAGCGGCCCGCCAAACACTGAAAACCCCGGCCCTGGCGCCGGGGTTTTTGCCttt < 2:35387/126‑1 (MQ=255) aTTAAAACTCGCTTGCTGCCACCGGAATCGACCTGTAAAAAGTACCCATCTTCG‑A‑GACGTGCGGGCGCACAAAGCGGCCCGCCAAACACTGAAAACCCCGGCCCTGGCGCCGGGGTTTTTGCCttt > 1:35387/1‑126 (MQ=255) aaaaCTCGCTTGCTGCCACCGGAATCGACCTGTAAAAAGTACCCATCTTCG‑A‑GACGTGCGGGCGCCCAAAGCGGCCCGCCAAACACTGAAAACCCCGGCGCCAGGGCCgggg > 2:152615/1‑112 (MQ=255) aaaaCTCGCTTGCTGCCACCGGAATCGACCTGTAAAAAGTACCCATCTTCG‑A‑GACGTGCGGGCGCACAAAGCGGCCCGCCAAACACTGAAAACCCCGGCGCCAGGGCCgggg < 1:152615/112‑1 (MQ=255) aaaCTCGCTTGCTGCCACCGGAATCGACCTGTAAAAAGTACCCATCTTCG‑A‑GACGTGCGGGCGCACAAAGCGGCCCGCCAAACACTGAAAACCCCGGCCCTGGCGCCGGGGTTTTTGCCTTTGGGGGATTCGATGAACAGCGagcagc < 6:208046/148‑1 (MQ=255) aaCTCGCTTGCTGCCACCGGAATCGACCTGTAAAAAGTACCCATCTTCG‑A‑GACGTGCGGGCGCACAAAGCGGCCCGCCAAACACTGAAAACCCCGGCCCTGGCGCCGGGGTTTTTGCCTTTGGGGGATTCGAt < 5:184824/133‑1 (MQ=255) gCTTGCTGCCACCGGAATCGACCTGTAAAAAGTACCCATCTTCG‑A‑GACGTGCGGGCGCACAAAGCGTCCCGCCAAACACTGAAAACCCCGGCCCTGGCGCCGGGGTTTTTGCCTTTGGGGGATTCGATGAACAGCGAGCAGCAAGCg < 5:177785/147‑1 (MQ=255) ctgcCACCGGAATCGACCTGTAAAAAGTACCCATCTTCG‑A‑GACGTGCGGGCGCACAAAGCGGCCCGCCAAACACTGAAAACCCCGGCCCTGGCGCCGGGGTTTTTGCCTTTGGGGGATTCGATGAACAGCGAGCAGCAAGCGTTAGtt > 6:70518/1‑148 (MQ=255) ccACCGGAATCGACCTGTAAAAAGTACCCATCTTCG‑A‑GACGTGCGGGCGCACAAAGCGGCCCGCCAAACACTGAAAACCCCGGCCCTGGCGCCGGGGTTTTTGCCTTTGGGGGATTCGATGAACAGCGAGCAGCAAGCGTTAGTTgaga < 2:38117/149‑1 (MQ=255) ggTAAAAAGTACCCATCTTCG‑A‑GACGTGCGGGCGCACAAAGCGGCCCGCCAAACACTGAAAACCCCGGCCCTGGCGCCGGGGTTTTTGCCTTTGGGGGATTCGATGAACAGCGAGCAGCAAGCGTTAGTTGAGATGCCAATCtggttgg > 2:89855/2‑149 (MQ=255) tAAAAAGTACCCATCTTCG‑A‑GACGTGCGGGCGCACAAAGCGGCCCGCCAAACACTGAAAACCCCGGCCCTGGCGCCGGGGTTTTTGCCTTTGGGGGATTCGATGAACAGCTAGCAGCAAGCGTTAGTTGAGATGCCAATCTGGTTGGTg < 2:218756/149‑1 (MQ=255) tAAAAAGTACCCATCTTCG‑A‑GACGTGCGGGCGCACAAAGCGGCCCGCCAAACACTGAAAACCCCGGCCCTGGCGCCGGGGTTTTTGCCTTTGGGGGATTCGATGAACAGCGAGCAGCAAGCGTTAGTTGAGATGCCAATCtggttggt < 5:94979/148‑1 (MQ=255) aaaaGTACCCATCTTCG‑A‑GACGTGCGGGCGCACAAAGCGGCCCGCCAAACACTGAAAACCCCGGCCCTGGCGCCGGGGTTTTTGCCTTTGGGGGATTCGATGAACAGCGAGCAGCAAGCGTTAGTTGAGATGCCAATCTGGTTGGTGa > 6:30220/1‑148 (MQ=255) cccATCTTCG‑A‑GACGTGCGGGCGCACAAAGCGGCCCGCCAAACACTGAAAACCCCGGCCCTGGCGCCGGGGTTTTTGCCTTTGGGGGATTCGATGAACAGCGAGCAGCAAGCGTTAGTTGAGATGCCAATCtggt < 8:97834/135‑1 (MQ=255) cccATCTTCG‑A‑GACGTGCGGGCGCACAAAGCGGCCCGCCAAACACTGAAAACCCCGGCCCTGGCGCCGGGGTTTTTGCCTTTGGGGGATTCGATGAACAGCGAGCAGCAAGCGTTAGTTGAGATGCCAATCtggt > 7:97834/1‑135 (MQ=255) aTCTTCG‑A‑GACGTGCGGGCGCACAAAGCGGCCCGCCAAACACTGAAAACCCCGGCCCTGGCGCCGGGGTTTTTGCCTTTGGGGGATTCGATGAACAGCGAGCAGCAAGCGTTAGTTGAGATGCCAATCTGGTTGGTGATCTTCCTGTcc > 7:52794/1‑149 (MQ=255) tCG‑A‑GACGTGCGGGCGCACAAAGCGGCCCGCCAAACACTGAAAACCCCGGCCCTGGCGCCGGGGTTTTTGCCTTTggg < 8:69763/78‑1 (MQ=255) tCG‑A‑GACGTGCGGGCGCACAAAGCGGCCCGCCAAACACTGAAAACCCCGGCCCTGGCGCCGGGGTTTTTGCCTTTggg > 7:69763/1‑78 (MQ=255) cgcACAAAGCGGCCCGCCAAACACTGAAAACCCCGGCCCTGGCGCCGGGGTTTTTGCCTTTGGGGGATTCGATGAACAGCGAGCAGCAAGCGTTAGTTGAGATGCCAATCTGGTTGGTGATCTTCCTGTCCCTGGTCGGCGGGgtgt > 6:23909/1‑147 (MQ=255) aaaGCGGCCCGCCAAACACTGAAAACCCCGGCCCTGGCGCCGGGGTTTTTGCCTTTGGGGGATTCGATGAACAGCGAGCAGCAAGCGTTAGTTGAGATGCCAATCTGGTTGGTGATCTTCCTGTCCCTGGTCGGCGGGGTGTCAGGCga < 5:23909/149‑1 (MQ=255) cccGCCAAACACTGAAAACCCCGGCCCTGGCGCCGGGGTTTTTGCCTTTGGGGGATTCGATGAACAGCGAGCAGCAAGCGTTAGTTGAGATGCCAATCTGGTTGGTGATCTTCCTGTCCCTGGTCGGCGGGGTGTCAGGCGAGATGTgg > 2:260102/1‑149 (MQ=255) cGCCAAACACTGAAAACCCCGGCCCTGGCGCCGGGGTTTTTGCCTTTGGGGGATTCGATGAACAGCGAGCAGCAAGCGTTAGTTGAGATGCCAATCTGGTTGGTGATCTTCCTGTCCCTGGTCGGCGGGGTGTCAGGCGAGATGTGGCg > 5:277523/1‑149 (MQ=255) cAAACACTGAAAACCCCGGCCCTGGCGCCGGGGTTTTTGCCTTTGGGGGATTCGATGAACAGCGAGCAGCAAGCGTTAGTTGAGATGCCAATCTGGTTGGTGATCTTCCTGTCCCTGGTCGGCGGGGTGTCAGGCGAGATGTGGCGGGc < 5:70518/149‑1 (MQ=255) aaaCACTGAAAACCCCGGCCCTGGCGCCGGGGTTTTTGCCTTTGGGGGATTCGATGAACAGCGAGCAGCAAGCGTTAGTTGAGATGCCAATCtggttg > 3:132425/1‑98 (MQ=255) aaaCACTGAAAACCCCGGCCCTGGCGCCGGGGTTTTTGCCTTTGGGGGATTCGATGAACAGCGAGCAGCAAGCGTTAGTTGAGATGCCAATCtggttg < 4:132425/98‑1 (MQ=255) tGAAAACCCCGGCCCTGGCGCCGGGGTTTTTGCGTTTGGGGGATTCGATGAACAGCGAGCAGCAAGCGTTAGTTGAGATGCCAATCTGGTTGGTGATCTTCCTGTCCCTGGTCGGCGGGGTGTCAGGCGAGATGTGGCGGGCCGACAt > 3:195578/1‑148 (MQ=255) tGAAAACCCCGGCCCTGGCGCCGGGGTTTTTGCCTTTGGGGGATTCGATGAACAGCGAGCAGCAAGCGTTAGTTGAGATGCCAATCTGGTTGGTGATCTTCCTGTCCCTGGTCGGCgggg > 2:2814/1‑120 (MQ=255) tGAAAACCCCGGCCCTGGCGCCGGGGTTTTTGCCTTTGGGGGATTCGATGAACAGCGAGCAGCAAGCGTTAGTTGAGATGCCAATCTGGTTGGTGATCTTCCTGTCCCTGGTCGGCGGGGTGTCAGGCGAGATGTGGCGGGCCGACATg > 7:93467/1‑149 (MQ=255) aaaaaCCCCGGCGCCAGGGCCGGGGTTTTTGCCTTTGGGGGATTCGATGAACAGCGAGCAGCAAGCGTTAGTTGAGATGCCAATCTGGTTGGTGATCTTCCTGTCCCTGGTCGGCGGGGTGTCAGGCGAGATGTGGCGGGCCGACATgg > 5:47102/2‑149 (MQ=255) aaaCCCCGGCCCTGGCGCCGGGGTTTTTGCCTTTGGGGGATTCGATGAACAGCGAGCAGCAAGCGTTAGTTGAGATGCCAATCTGGTTGGTGATCTTCCTGTCCCTGGTCGGCGGGGTGTCAGGCGAGATGTGGCGGGCCGACATGGc > 7:251184/1‑148 (MQ=255) aaaCCCCGGCCCTGGCGCCGGGGTTTTTGCCTTTGGGGGATTCGATGAACAGCGAGCAGCAAGCGTTAGTTGAGATGCCAATCTGGTTGGTGATCTTCCTGTCCCTGGTCGGCGGGGTGTCAGGCGAGATGTGGCGGGCCGACATGGc < 8:251184/148‑1 (MQ=255) ccccGGCCCTGGCGCCGGGGTTTTTGCCTTTGGGGGATTCGATGAACAGCGAGCAGCAAGCGTTAGTTGAGATGCCAATCTGGTTGGTGATCTTCCTGTCCCTGGTCGGCGGGGTGTCAGGCGAGATGTGGCGGGCCGACATGGCCGGc > 4:126028/1‑149 (MQ=255) | ATTCAACAGACATTCCCCGGACGTTTACCACTTATTGCCGGGTGGCATTAAAACTCGCTTGCTGCCACCGGAATCGACCTGTAAAAAGTACCCATCTTCG‑A‑GACGTGCGGGCGCACAAAGCGGCCCGCCAAACACTGAAAACCCCGGCCCTGGCGCCGGGGTTTTTGCCTTTGGGGGATTCGATGAACAGCGAGCAGCAAGCGTTAGTTGAGATGCCAATCTGGTTGGTGATCTTCCTGTCCCTGGTCGGCGGGGTGTCAGGCGAGATGTGGCGGGCCGACATGGCCGGC > NC_002947/3424742‑3425031 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |