| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,430,582 | C→A | 17.2% | T267N (ACC→AAC) | PP_3045 → | ATP‑dependent protease ClpP |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,430,582 | 0 | C | A | 17.2% | 69.2 / 8.3 | 29 | T267N (ACC→AAC) | PP_3045 | ATP‑dependent protease ClpP |
| Reads supporting (aligned to +/- strand): ref base C (14/10); new base A (3/2); total (17/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.12e-01 | |||||||||||
AATACCCCGCAAGCCCTATTGGATCAGCTCAAGGCCAGTAGGGATGGGGTGACCGAGCCGGTTGATCCCGAACCCGACAGCGAGCCAGCTCCCCCAGCGCCGAATGCAAACGACTCAGCAGCCTTGGCCTTGTTGATCACCCAGGCCTGCAGCAAGGCGGGGATCAGCAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGCCC > NC_002947/3430443‑3430724 | aaTACCCCGCAAGCCCTATTGGATCAGCTCAAGGCCAGTAGGGATGGGGTGACCGAGCCGGTTGATCCCGAACCCGACAGCGAGCCAGCTCCCCCAGCGCCGAATGCAAACGACTCAGCAGCCTTGGCCTGGGTGATCAACAAGGccaa < 5:162823/149‑3 (MQ=255) tACCCCGCAAGCCCTATTGGATCAGCTCAAGGCCAGTAGGGATGGGGTGACCGAGCCGGTTGATCCCGAACCCGACAGCGAGCCAGCTCCCCCAGCGCCGAATGCAAACGACTCAGCAGCCTTGGCCTTGTTGATCACCCAGGCCTgca < 2:215847/149‑1 (MQ=255) gATCAGCTCAAGGCCAGTAGGGATGGGGTGACCGAGCCGGTTGATCCCGAACCCGACAGCGAGCCAGCTCCCCCAGCGCCGAATGCAAACGACTCAGCAGCCTTGGCCTTGTTGATCACCCAGGCCTGCAGCAAGGCGGGGATCAGCaa > 3:113833/1‑149 (MQ=255) aGCTCAAGGCCAGTAGGGATGGGGTGACCGAGCCGGTTGATCCCGAACCCGACAGCGAGCCAGCTCCCCCAGCGCCGAATGCAAACGACTCAGCAGCCTTCGCCTTGTTGATCACCCAGGCCTGCAGCAAGGCGGGGATCAGCAACCtg < 5:79046/149‑1 (MQ=255) aTGGGGTGACCGAGCCGGTTGATCCCGAACCCGACAGCGAGCCAGCTCCCCCAGCGCCGAATGCAAACGACTCAGCAGCCTTGGCCTTGTTGATCACCCAGGCCTGCAGCAAGGCGGGGa < 1:68240/120‑1 (MQ=255) aTGGGGTGACCGAGCCGGTTGATCCCGAACCCGACAGCGAGCCAGCTCCCCCAGCGCCGAATGCAAACGACTCAGCAGCCTTGGCCTTGTTGATCACCCAGGCCTGCAGCAAGGCGGGGa > 2:68240/1‑120 (MQ=255) tGACCGAGCCGGTTGATACCGAACCCGACAGCGAGCCAGCTCCCCCAGCGCCGAATGCAAACGACTCAGCAGCATTGGCATTCTTCATCACACAGGCCTGCAGCAAGGCGGGCATCAGCAACCTGGTGGAGCCGCTGATTGCATCGAc > 7:114085/1‑148 (MQ=255) aGCCGGTTGATCCCGAACCCGACAGCGAGCCAGCTCCCCCAGCGCCGAATGCAAACGACTCAGCAGCCTTGGCCTTGTTGATCACCCAGGCCTGCAGCAAGGCGGGGATCAGCAACCTGGTGGAGCGGCTGATTGCATCGACCAAGCtt > 4:3986/1‑149 (MQ=255) aGCCGGTTGATCCCGAACCCGACAGCGAGCCAGCTCCCCCAGCGCCGAATGCAAACGACTCAGCAGCCTTGGCCTTGTTGATCACCCAGGCCTGCAGCAAGGCGGGGATCAGCAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCtt < 4:175873/149‑1 (MQ=255) gCCGGTTGATCCCGAACCCGACAGCGAGCCAGCTCCCCCAGCGCCGAATGCAAACGACTCAGCAGCCTTGGCCTTGTTGATCACCCAGGCCTGCAGCAAGGCGGGGATCa < 6:202441/110‑1 (MQ=255) gCCGGTTGATCCCGAACCCGACAGCGAGCCAGCTCCCCCAGCGCCGAATGCAAACGACTCAGCAGCCTTGGCCTTGTTGATCACCCAGGCCTGCAGCAAGGCGGGGATCa > 5:202441/1‑110 (MQ=255) cAGCGAGCCAGCTCCCCCAGCGCCGAATGCAAACGACTCAGCAGCCTTGGCCTTGTTGATCACCCAGGCCTGCAGCAAGGCGGGGATCAGCAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTgcagg < 4:113833/149‑1 (MQ=255) aGCCAGCTCCCCCAGCGCCGAATGCAAACGACTCAGCAGCCTTGGCCTTGTTGATCACCCAGGCCTGCAGCAAGGCGGGGATCAGCAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGgcagca > 6:78866/1‑149 (MQ=255) gCTCCCCCAGCGCCGAATGCAAACGACTCAGCAGCCTTGGCCTTGTTGATCACCCAGGCCTGCAGCAAGGCGGGGATCAGCAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGAc > 7:2281/1‑149 (MQ=255) ccccAGCGCCGAATGCAAACGACTCAGCAGCCTTGGCCTTGTTGATCACCCAGGCCTGCAGCAAGGCGGGGATCAGCAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCcgc > 8:80986/1‑149 (MQ=255) ccAGCGCCGAATGCAAACGACTCAGCAGCCTTGGCCTTGTTGATCACCCAGGCCTGCAGCAAGGCGGGGATCAGCAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCt < 8:52267/114‑1 (MQ=255) ccAGCGCCGAATGCAAACGACTCAGCAGCCTTGGCCTTGTTGATCACCCAGGCCTGCAGCAAGGCGGGGATCAGCAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCt > 7:52267/1‑114 (MQ=255) gcgcCGAATGCAAACGACTCAGCAGCCTTGGCCTTGTTGATCACCCAGGCCTGCAGCAAGGCGGGGATCAGCAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCaa < 7:80986/149‑1 (MQ=255) aaTGCAAACGACTCAGCAGCCTTGGCCTTGTTGATCACCCAGGCCTGCAGCAAGGCGGGGATCAGCAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCgg > 7:106192/1‑148 (MQ=255) cagcCTTGGCCTTGTTGATCACCCAGGCCTGCAGCAAGGCGGGGATCAGCAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGtt < 5:78866/149‑1 (MQ=255) cagcCTTGGCCTTGTTGATCACCCAGGCCTGCAGCAAGGCGGGGATCAGCAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGtt < 8:114085/149‑1 (MQ=255) ctgcaggcctggGTGATCAACAAGGCCTGCAGCAAGGCGGGGATCAGCAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGTGACCTCTGCGTTg > 8:193896/6‑148 (MQ=255) ctgcaggcctggGTGATCAACAAGGCCTGCAGCAAGGCGGGGATCAGCAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTg > 8:197545/6‑148 (MQ=255) ttggccttgTTGATCACCCAGGCCTGCAGCAAGGCGGGGATCAGCAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCAACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGCAg > 8:133616/1‑148 (MQ=255) caggcctggGTGATCAACAAGGCCTGCAGCAAGGCGGGGATCAGCAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAg < 6:97144/89‑1 (MQ=38) caggcctggGTGATCAACAAGGCCTGCAGCAAGGCGGGGATCAGCAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAg > 5:97144/3‑91 (MQ=38) tgATCACCCAGGCCTGCAGCAAGGCGGGGATCAGCAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGccc > 1:61638/1‑149 (MQ=255) aTCACCCAGGCCTGCAGCAAGGCGGGGATCAGCAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGccc > 5:129568/1‑147 (MQ=255) tCACCCAGGCCTGCAGCAAGGCGGGGATCAGCAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGccc > 7:121859/1‑146 (MQ=255) | AATACCCCGCAAGCCCTATTGGATCAGCTCAAGGCCAGTAGGGATGGGGTGACCGAGCCGGTTGATCCCGAACCCGACAGCGAGCCAGCTCCCCCAGCGCCGAATGCAAACGACTCAGCAGCCTTGGCCTTGTTGATCACCCAGGCCTGCAGCAAGGCGGGGATCAGCAACCTGGTGGAGCCGCTGATTGCATCGACCAAGCTTGCTGATGAAGCCACCGTGCAGGCAGCACTGACCCGCGCCAAGTCGGTACGGGACCTCTGCGTTGCAGCCCGCTTGCCC > NC_002947/3430443‑3430724 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |