| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 4,087,485 | C→G | 13.3% | intergenic (+134/‑292) | PP_3597 → / → PP_3598 | amino acid ABC transporter ATP‑binding protein/peptidase C26 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 4,087,485 | 0 | C | G | 13.3% | 73.3 / 5.7 | 30 | intergenic (+134/‑292) | PP_3597/PP_3598 | amino acid ABC transporter ATP‑binding protein/peptidase C26 |
| Reads supporting (aligned to +/- strand): ref base C (12/14); new base G (2/2); total (14/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.19e-01 | |||||||||||
ACTGATTGAAAGCCTGTCACTGTGGGGGGTTTACCCGCGAAGAAGACACCGCCGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGACCCAA‑CTGCATCGTTAAATATTATTGACCGCAGACCCTGCCAAACCCACGCCGCCACAGGCCCGCA‑TCGGTTTCAGCCCCCAGAAAACGGCGTATCCCCCGCGTTAAAGCCCGCTTCCGTCGTTTGACA > NC_002947/4087347‑4087625 | aCTGATTGAAAGCCTGTCACTGTGGGGGGTTTACCCGCGAAGAAGACACCGCCGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATg > 4:86647/1‑149 (MQ=255) aaGCCTGTCACTGTGGGGGGTTTACCCGCGAAGAAGACACCGCCGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGACCCAA‑CTg < 1:174246/149‑1 (MQ=255) aGCCTGTCACTGTGGGGGGTTTACCCGCGAAGAAGACACCGCCGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGACCCAA‑CTGc < 4:209112/149‑1 (MQ=255) cTGTCACTGTGGGGGGTTTACCCGCGAAGAAGACACCGCCGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCAGCGGCGCAATGat < 5:83982/138‑2 (MQ=255) cTGTCACTGTGGGGGGTTTACCCGCGAAGAAGACACCGCCGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCAGCGGCGCAATGat > 6:83982/1‑137 (MQ=255) tttACCCGCGAAGAAGACACCGCCGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGACCCAA‑CTGCATCGTTAAATATTATTGAc > 1:220771/1‑149 (MQ=255) aCCCGCGAAGAAGACACCGCCGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGACCCAA‑CTGCATCGTTAAATATTATTGACCg < 2:236677/148‑1 (MQ=255) gaagaCACCGCCGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGACCCAA‑CTGCATCGTTAAATATTATTGACCGCAGACCCTGc < 4:85508/149‑1 (MQ=255) aagaCACCGCCGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCAGCGGCGCAATGatt < 7:15196/110‑3 (MQ=25) aagaCACCGCCGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCAGCGGCGCAATGatt > 8:15196/1‑108 (MQ=25) ccgccgTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGACCCAA‑CTGCATCGTTAAATATTATTGACCGCAGACCCTGCCAAAcc > 2:77128/1‑148 (MQ=255) cgccgTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATg > 6:8658/1‑100 (MQ=255) cgccgTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATg < 5:8658/100‑1 (MQ=255) tGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGACCCAA‑CTGCATCGTTAAATATTATTGACCGCAGACCCTGCCAAACCCAcgccg < 3:39960/149‑1 (MQ=255) aTGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGACCCAA‑CTGCATCGTTAAATATTATTGACCGCAGACCCTGCCAAAc < 2:223822/138‑1 (MQ=255) aTGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGACCCAA‑CTGCATCGTTAAATATTATTGACCGCAGACCCTGCCAAAc > 1:223822/1‑138 (MQ=255) gCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGACCCAA‑CTGCATCGTTAAATATTATTGACCGCAGACCCTGCCAAACCCACGCCGCCACAg < 3:86647/149‑1 (MQ=255) gggCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGACCCAA‑CTGCATCGTTAAATATTATTGACCGCAGACCCTGCCAAACCCACGCCGCCACAGGccc > 1:67875/1‑149 (MQ=255) ccGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGACCCAA‑CTGCATCGTTAAATATTATTGACCGCAGACCCTGCCAAACCCACGCCGCCACAGGCCCGCA‑TCGGtt < 2:220771/149‑1 (MQ=255) gtgtTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGACCCAA‑CTGCATCGTTAAATATTATTGACCGCAGACCCTGCCAAACCCACGCCGCCACAGGCTCGCA‑TCGGTTTc > 7:225114/1‑149 (MQ=255) tgtTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGACCCAA‑CTGCATCGTTAAATATTATTGACCGCAGACCCTGCCAAACCCACGCCGCCACAGGCCCGCA‑TCGGTTTCa < 2:67875/149‑1 (MQ=255) tgtTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGACCCAA‑CTGCATCGTTAAATATTATTGACCGCAGACCCTGCCAAACCCACGCCGCCACAGGCCCGCA‑TCGGTTTCa < 1:235395/149‑1 (MQ=255) gCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGACCCAACCTGCATCGTTAAATATTATTGACCGCAGACCCTGc < 1:36528/102‑1 (MQ=255) gCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGACCCAA‑CTGCATCGTTAAATATTATTGACCGCAGACCCTGc > 2:36528/1‑101 (MQ=255) ccACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGACCCAA‑CTGCATCGTTAAATATTATTGACCGCAGACCCTGCCAAACCCACGCCGCCACAGGCCCGCA‑TCGGTTTCAGCCCCCAGAAAACGGCGTATc > 7:20140/1‑149 (MQ=255) cAAGTTACCTAATCATTGCGCCGCTGCAATGACCCAA‑CTGCATCGTTAAATATTATTGACCGCAGACCCTGCCAAACCCACGCCGCCACAGGCCCGCA‑TCGGTTTCAGCCCCCAGAAAACGGCGTATCCCCCGCGTTAAAGCCCGCtt < 8:20140/148‑1 (MQ=255) cTAATCATTGCGCCGCTGCAATGACCCAA‑CTGCATCGTTAAATATTATTTACCGCAGACCCTGCCAAACCCACGCCGCCACAGGCCCGCA‑TCGGTTTCAGCCCCCAGAAAACGGCGTATCCCCCGCGTTAAAGCCCGCTTCCGTCtttt > 2:74832/1‑149 (MQ=255) cTAATCATTGCGCCGCTGCAATGACCCAA‑CTGCATCGTTAAATATTATTGACCGCAGACCCTGCCAAACCCACGCCGCCACAGGCCCGCACACGGTTTCAGCCCCCAGAAAACGGCGTATCCCCCGCGTTAAAGCCCGCTTCCGTCGtt < 1:77128/149‑1 (MQ=255) cTAATCATTGCGCCGCTGCAATGACCCAA‑CTGCATCGTTAAATATTATTGACCGCAGACCCTGCCAAACCCACGCCGCCACAGGCCCGCA‑TCGGTTTCAGCCCCCAGAAAACGGCGTATCCCCCGCGTTAAAGCCCGCTTCCGTCGttt > 5:142315/1‑149 (MQ=255) tCATTGCGCCGCTGCAATGACCCAA‑CTGCATCGTTAAATATTATTGACCGCAGACCCTGCCAAACCCACGCCGCCACAGGCCCGCA‑TCGGTTTCAGCCCCCAGAAAACGGCGTATCCCCCGCGTTAAAGCCCGCTTCCGTCGTTTGACa > 5:32567/1‑149 (MQ=255) | ACTGATTGAAAGCCTGTCACTGTGGGGGGTTTACCCGCGAAGAAGACACCGCCGTGGATGGCACGGGCTTCGCCCGTGTTCGCGGGCAAGCCCACTCCCACAGTGACCGAGGTTACTTCAAGTTACCTAATCATTGCGCCGCTGCAATGACCCAA‑CTGCATCGTTAAATATTATTGACCGCAGACCCTGCCAAACCCACGCCGCCACAGGCCCGCA‑TCGGTTTCAGCCCCCAGAAAACGGCGTATCCCCCGCGTTAAAGCCCGCTTCCGTCGTTTGACA > NC_002947/4087347‑4087625 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |