Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,125,636 | C→A | 9.5% | G66C (GGT→TGT) ‡ | PP_3629 ← | hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,125,636 | 0 | C | A | 9.5% | 116.1 / 4.6 | 42 | G66C (GGT→TGT) ‡ | PP_3629 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base C (18/20); new base A (2/2); total (20/22) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.74e-01 |
CCCCATTTGTCCCTGCACCAGCCGCAAACGCTGGCCTCGCCGTCGTTACCGACAATGGCATCCCACAAGCGGTCGGTCTCTGCCTGGTCCGCGGTACTGACCTGGAACGAAAATGCCTCACAGTGCTTGAAGGCCGGGCCACCATTGAGGCCCACGCAAGGGATACCCATTACCGTGAATTCCACGGTGATCACATCGCCCTGCTTGCCTGAAGGGTAATCGGCGGGAGCCTGGTGCACAGCGACAACCCGGCTATCGGGGAAAGTTCGGGCGTAGAAGTTCGCCGCCTCT > NC_002947/4125494‑4125784 | ccccATTTGTCCCTGCACCAGCCGCAAACGCTGGCCTCGCCGTCGTTACCGACAATGGCATCCCACAAGCGGTTGGTCTCTGCCTGGTCCGCGGTACTGACCTGGAACGAAAATGCCTCACAGTGCTTGAAGGCCGGGCCACCATTGAg < 6:121239/149‑1 (MQ=255) ccccATATGTCCCTGCACCAGCCGCAAACGCTGGCCTCGCCGTCGTTACCGACAATGGCATCCCACAAGCGGTCGGTCTCTGCCTGGTCCGCGGTACTGACCTGGAACGAAAATGCCTCACAGTGCTTGAAGGCCGGGCCACCATTGAg < 4:215091/149‑1 (MQ=255) tCCCTGCACCAGCCGCAAACGCTGGCCTCGCCGTCGTTACCGACAATGGCATCCCACAAGCGGTCGGTCTCTGCCTGGTCCGCGGTACTGACCTGGAACGAAAATGCCTCACAGTGCTTGAAGGCCGGGCCACCATTGAGGCCCACGc > 7:83615/1‑148 (MQ=255) cccTGCACCAGCCGCAAACGCTGGCCTCGCCGTCGTTACCGACAATGGCATCCCACAAGCGGTCGGTCTCTGCCTGGTCCGCGGTACTGACCTGGAACGAAAATGCCTCACAGTGCTTGAAGGCCGGGCCACCATTGAGGCCCACGc > 2:184289/1‑147 (MQ=255) ccTGCACCAGCCGCAAACGCTGGCCTCGCCGTCGTTACCGACAATGGCATCCCACAAGCGGTCGGTCTCTGCCTGGTCCGCGGTACTGACCTGGAACGAAAATGCCTCACAGTGCTTGAAGGCCGGGCCACCATTGAGGCCCACGCAAg < 8:38363/149‑1 (MQ=255) gCAAACGCTGGCCTCGCCGTCGTTACCGACAATGGCATCCCACAAGCGGTCGGTCTCTGCCTGGTCCGCGGTACTGACCTGGAACGAAAATGCCTCACAGTGCTTGAAGGCCGGGCCACCATTGAGGCCCACGCAAGGGATACCCATTa > 6:249354/1‑149 (MQ=255) aaaCGCTGGCCTCGCCGTCGTTACCGACAATGGCATCCCACAAGCGGTCGGTCTCTGCCTGGTCCGCGGTACTGACCTGGAACGAAAATGCCTCACAGTGCTTGAAGGCCGGGCCACCATTGAGGCCCACGCAAGGGATACCCATTAcc < 5:249354/149‑1 (MQ=255) aaaCGCTCCCCTCGCCGTCGTTAGCGACAATGGCATCCCACAAGCGGTCGGGCGCTCCCAGGTCCGCGGAAGTCACGGGCAACGAAACAGCCTCACACTGCGTGAAGCCCGGGCCCCCATAGAGGCGCCCGCCAGGGATACCCCTTagc > 6:148714/1‑147 (MQ=255) gtcgtTACCGACAATGGCATCCCACAAGCGGTCGGTCTCTGCCTGGTCCGCGGTACTAACCTGGAACGAAAATGCCTCACAGTGCTTGAAGGCCGGGCCTCAATGGTGGcccg < 6:188786/113‑2 (MQ=255) gtcgtTACCGACAATGGCATCCCACAAGCGGTCGGTCTCTGCCTGGTCCGCGGTACTAACCTGGAACGAAAATGCCTCACAGTGCTTGAAGGCCGGGCCTCAATGGTGGcccg > 5:188786/1‑112 (MQ=255) aCAATGGCATCCCACAAGCGGTCGGTCTCTGCCTGGTCCGCGGTACTGACCTGGAACGAAACTGCCTCACAGTGCTTGAAGGCCGGGCCACCATTGAGGCCCACGCAAGGGATACCCATTACCGTGAATTCCACGGTGATCACATCGcc < 6:59421/149‑1 (MQ=255) aCAATGGCATCCCACAAGCGGTCGGTCTCTGCCTGGTCCGCGGTACTGACCTGGAACGAAAATGCCTCACAGTGCTTGAAGGCCGGGCCACCATTGAGGCCCACGCAAg < 1:29134/109‑1 (MQ=255) aCAATGGCATCCCACAAGCGGTCGGTCTCTGCCTGGTCCGCGGTACTGACCTGGAACGAAAATGCCTCACAGTGCTTGAAGGCCGGGCCACCATTGAGGCCCACGCAAg > 2:29134/1‑109 (MQ=255) aTCCCACAAGCGGTCGGTCTCTGCCTGGTCCGCGGTACTGACCTGGAACGAAAATGCCTCACAGTGCTTGAAGGCCGGGCCACCATTGAGGCCCACGCAAGGGATACCCATTACCGTGAATTCCACGGTGATCACATCGCCCTGCTTGc < 5:180595/149‑1 (MQ=255) gtcggtgTCTGCCTGTTCGGCGGTACTTAACTGGAACGAAAATGCCTCACAGTGCTTGATGGGCGGGCCACCATTGAGTCGCACGCAAGGGATACCCATTAGTGTGAAGTCCACGGTGATGACATCGCCCTGCTTGCCTGAAGGGTAAt < 6:205514/149‑1 (MQ=255) gtcggtcTCTGCCTGTGCCTCGGTACTGACCTTGAACGAACATGCATAACAGTGCTTGAAGGCCGCTCCAACATTGATGCCCACGCAAGGGATACCCATTACCGTGAATTCCAAGGTTATCACATCGCCCTTCTTGCCTGAAGGGTAAt < 6:201875/149‑1 (MQ=255) tctGCCTGGTCCGCGGTACTGACCTGGAACGAAAATGCCTCACAGTGCTTGAAGGCCGGGCCACCATTGAGGCCCACGCAAGGGATACCCATTACCGTGAATTCCACGGTGATCACATCGCCCTGCTTGCCTGAAGGGTAATcggcgg > 7:205245/1‑148 (MQ=255) tGCCTGGTCCGCGGTACTGACCTGGAACGAAAATGCCTCACAGTGCTTGAAGGCCGGGCCACCATTGAGGCCCACGCAAGGGATACCCATTACCGTGAATTCCACGGTGATCACATCGCCCTGCTTGCCTGAAGGGTAATcggcgg < 8:83615/146‑1 (MQ=255) gTCCGCGGTACTGACCTGGAACGAAAATGCCTCACAGTGCTTGAAGGCCGGGCCACCATTGAGGCCCACGCAAGGGATACCCATTACCGTGGAATTCACGGTAAtg > 7:99903/1‑105 (MQ=255) gTCCGCGGTACTGACCTGGAACGAAAATGCCTCACAGTGCTTGAAGGCCGGGCCACCATTGAGGCCCACGCAAGGGATACCCATTACCGTGGAATTCACGGTAAtg < 8:99903/106‑2 (MQ=255) tGACCTGGAACGAAAATGCCTCACAGTGCTTGAAGGCCGGGCCACCATTGAGGCCCACGCAAGGGATACCCATTACCGTGAATTCCACGGTGATCACATCGCCCTGCTTGCCTGAAGGGTAATCGGCGGGAGCCTGGTGCACAGCGAc > 1:121849/1‑148 (MQ=255) tGACCTGGAACGAAAATGCCTCACAGTGCTTGAAGGCCGGGCCACCATTGAGGCCCACGCAAGGGATACCCATTACCGTGAATTCCACGGTGATCACATCGCCCTGCTTGCCTGAAGGGTAATCGGCGGGAGCCTGGTGCACAGCGAc > 1:117792/1‑148 (MQ=255) cTGGAACGAAAATGCCTCACAGTGCTTGAAGGCCGGGCCACCATTGAGGCCCACGCAAGGGATACCCATTACCGTGAATTCCACGGTGATCACATCGCCCTGCTTGCCTGAAGGGTAATCGGCGGGAGCCTGGTGCACAGCGACAAccc > 3:23591/1‑149 (MQ=255) tGGAACGAAAATGCCTCACAGTGCTTGAAGGCCGGGCCACCATTGAGGCCCACGCAAGGGATACCCATTACCGTGAATTCCACGGTGATCACATCGCCCTGCTTGCCTGAAGGGTAATcggcg < 4:190161/123‑1 (MQ=255) tGGAACGAAAATGCCTCACAGTGCTTGAAGGCCGGGCCACCATTGAGGCCCACGCAAGGGATACCCATTACCGTGAATTCCACGGTGATCACATCGCCCTGCTTGCCTGAAGGGTAATcggcg > 3:190161/1‑123 (MQ=255) aaCGAAAATGCCTCACAGTGCTTGAAGGCCGGGCCACCATTGAGGCCCACGCAAGGGATACCCATTACCGTGAATTCCACGGTGATCACATCGCCCTGCTTGCCTGAAGGGTAATCGGCGGGAGCCTGGTGCACAGCGACAACCCGGc > 1:98988/1‑148 (MQ=255) cGAAAATGCCTCACAGTGCTTGAAGGCCGGGCCACCATTGAGGCCCACGCAAGGGATACCCATTACCGTGAATTCCACGGTGATCACATCGCCCTGCTTGCCTGAAGGGTAATCGGCGGGAGCCTGGTGCACAGCGACAACCCGGCTAt > 3:207603/1‑149 (MQ=255) ccTCACAGTGCTTGAAGGCCGGGCCACCATTGAGGCCCACGCAAGGGATACCCATTACCGTGAATTCCACGGTGATCACATCGCCCTGCTTGCCTGAAGGGTAATCGGCGGGAGCCTGGt < 2:204650/120‑1 (MQ=255) acaGTGCTTGAAGGCCGGGCCACCATTGAGGCCCACGCAAGGGATACCCATTACCGTGAATTCCACGGTGATCACATCGCCCTGCTTGCCTGaa < 2:257582/94‑1 (MQ=255) acaGTGCTTGAAGGCCGGGCCACCATTGAGGCCCACGCAAGGGATACCCATTACCGTGAATTCCACGGTGATCACATCGCCCTGCTTGCCTGaa > 1:257582/1‑94 (MQ=255) acaGTGCTTGAAGGCCGGGCCACCATTGAGGCCCACGCAAGGGATACCCATTACCGTGAATTCCACGGTGATCACATCGCCCTGCTTGCCTGaa > 3:11775/1‑94 (MQ=255) acaGTGCTTGAAGGCCGGGCCACCATTGAGGCCCACGCAAGGGATACCCATTACCGTGAATTCCACGGTGATCACATCGCCCTGCTTGCCTGaa < 4:11775/94‑1 (MQ=255) acaGTGCTTGAAGGCCGGGCCACCATTGAGGCCCACGCAAGGGATACCCATTACCGTGAATTCCACGGTGATCACATCGCCCTGCTTGCCTGAAGGGTAATCGGCGGGAGCCTGGTGCACAGCGACAACCCGGCTATCGGGGAAAGt < 2:121849/147‑1 (MQ=255) acaGTGCTTGAAGGCCGGGCCACCATTGAGGCCCACGCAAGGGATACCCATTACCGTGAATTCCACGGTGATCACATCGCCCTGCTTGCCTGAAGGGTAATCGGCGGGAGCCTGGTGCACAGCGACAACCCGGCTATCGGGGAAAGt < 2:117792/147‑1 (MQ=255) aGTGCTTGAAGGCCGGGCCACCATTGAGGCCCACGCAAGGGATACCCATTACCGTGAATTCCACGGTGATCACATCGCCCTGCTTGCCTGAAGGGTAATCGGCGGGAGCCTGGTGCACAGCGACAACCCGGCTATCGGGGAAAGTTCgg > 4:128434/1‑149 (MQ=255) aGTGCTTGAAGGCCGGGCCACCATTGAGGCCCACGCAAGGGATACCCATTACCGTGAATTCCACGGTGATCACATCGCCCTGCTTGCCTGAAGGGTAATCGGCGGGAGCCTGGTGCACAGCGACAACCCGGCTATCGGGGAAAGTTCgg < 4:207603/149‑1 (MQ=255) gAAGGCCGGGCCACCATTGAGGCCCACGCAAGGGATACCCATTACCGTGAATTCCACGGTGATCACATCGCCCTGCTTGCCTGAAGGGTAATCGGCGGGAGCCTGGTGCACAGCGACAACCCGGCTATCGGGGAAAGTTCGGGCGTa < 8:205245/147‑1 (MQ=255) tgcgtgggCCTCAATGGTGGCCCACGCAAGGGATACCCATTACCGTGAATTCCACGGTGATCACATCGCCCTGCTTGCCTGAAGGGTAATCGGCGGGAGCCTGGTGCACAGCGACAACCCgg > 3:109971/6‑122 (MQ=255) tgcgtgggCCTCAATGGTGGCCCACGCAAGGGATACCCATTACCGTGAATTCCACGGTGATCACATCGCCCTGCTTGCCTGAAGGGTAATCGGCGGGAGCCTGGTGCACAGCGACAACCCgg < 4:109971/117‑1 (MQ=255) gCCGGGCCACCATTGAGGCCCACGCAAGGGATACCCATTACCGTGAATTCCACGGTGATCACATCGCCCTGCTTGCCTGAAGGGTAATCGGCGGGAGCCTGGTGCACAGCGACAACCCGGCTATCGGGGAAAGTTCgg > 7:242895/1‑138 (MQ=255) gCCGGGCCACCATTGAGGCCCACGCAAGGGATACCCATTACCGTGAATTCCACGGTGATCACATCGCCCTGCTTGCCTGAAGGGTAATCGGCGGGAGCCTGGTGCACAGCGACAACCCGGCTATCGGGGAAAGTTCgg < 8:242895/138‑1 (MQ=255) cGGGCCACCATTGAGGCCCACGCAAGGGATACCCATTACCGTGAATTCCACGGTGATCACATCGCCCTGCTTGCCTGAAGGGTAATCGGCGGGAGCCTGGTGCACAGCGACAACCCGGCTATCGGGGAAAGTTCGGGCGTAGAAGTTcg > 4:150482/1‑149 (MQ=255) caTTGAGGCCCACGCAAGGGATACCCATTACCGTGAATTCCACGGTGATCACATCGCCCTGCTTGCCTGAAGGGTAATCGGCGGGAGCCTGGTGCACAGCGACAACCCGGCTATCGGGGAAAGTTCGGGCGTAGAAGTTCGCCGCctct > 1:35763/1‑149 (MQ=255) | CCCCATTTGTCCCTGCACCAGCCGCAAACGCTGGCCTCGCCGTCGTTACCGACAATGGCATCCCACAAGCGGTCGGTCTCTGCCTGGTCCGCGGTACTGACCTGGAACGAAAATGCCTCACAGTGCTTGAAGGCCGGGCCACCATTGAGGCCCACGCAAGGGATACCCATTACCGTGAATTCCACGGTGATCACATCGCCCTGCTTGCCTGAAGGGTAATCGGCGGGAGCCTGGTGCACAGCGACAACCCGGCTATCGGGGAAAGTTCGGGCGTAGAAGTTCGCCGCCTCT > NC_002947/4125494‑4125784 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |