Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,544,952 | A→G | 13.9% | V285A (GTG→GCG) | hyuC ← | bifunctional N‑carbamoyl‑beta‑alanine amidohydrolase/allantoine amidohydrolase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,544,952 | 0 | A | G | 13.9% | 103.1 / 7.4 | 44 | V285A (GTG→GCG) | hyuC | bifunctional N‑carbamoyl‑beta‑alanine amidohydrolase/allantoine amidohydrolase |
Reads supporting (aligned to +/- strand): ref base A (17/20); new base G (4/2); total (22/22) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.12e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GGCCGTGGGCACCAACTCATGGCTCAGGCCATGCTTGGCACAGGTCGCCTCGATCACCCCGCGCACCTCGGCAATCATCGCATTCAACTGCTCGCCCTCCAGGTGGCGGAAGTCGAGGGTCATGCGCACTTCGCCCGGGA‑TCACGTTACGCGAGCCCGGGTACGCCTGAAGGCAACCCACCGTGCCACAGGCGTGGGGCTGGTGGGCAAGCGCCGTGCGGTTGACCGCCTCTACCACAGCGGCTGCCCCCACCAGGGCGTCCTTGCGCAGGTGCATCGGCG > NC_002947/4544810‑4545090 | ggCCGTGGGCACCAACTCATGGCTCAGGCCATGCTTGGCACAGGTCGCCTCGATCACCCCGCGCACCTCGGCAATCATCGCATTCAACTGCTCGCCCTCCAGGTGGCGGAAGTCGAGGGTCATGCGCACTTCGCCCGGGA‑TCACGTTAc > 4:135504/1‑149 (MQ=255) ggCCGTGGGCACCAACTCATGGCTCAGGCCATGCTTGGCACAGGTCGCCTCGATCACCCCGCGCACCTCGGCAATCATCGCATTCAACTGCTCGCCCTCCAGGTGGCGGAAGTCGAGGGTCATGCGCACTTCGCCCGGGA‑TCACGTTAc > 4:115156/1‑149 (MQ=255) gCCGTGGGCACCAACTCATGGCTCAGGCCATGCTTGGCACAGGTCGCCTCGATCACCCCGCGCACCTCGGCAATCATCGCATTCAACTGCTCGCCCTCCAGGTGGCGGAAGTCGAGGGTCATGCGCACTTCGCCCGGGA‑TCACGTTAcg < 7:204537/149‑1 (MQ=255) gCACCAACTCATGGCTCAGGCCATGCTTGGCACAGGTCGCCTCGATCACCCCGCGCACCTCGGCAATCATCGCATTCAACTGCTCGCCCTCCAGGTGGCGGAAGTCGAGGGTCATGCGCACTTCGCCCGGGA‑TCACGTTACGCGAGccc < 3:135504/149‑1 (MQ=255) cACCAACTCATGGCTCAGGCCATGCTTGGCACAGGTCGCCTCGATCACCCCGCGCACCTCGGCAATCATCGCATTCAACTGCTCGCCCTCCAGGTGGCGGAAGTCGAGGGTCATGCGCACTTCGCCCGGGA‑TCACGTTACGCGa < 1:113176/144‑1 (MQ=255) cACCAACTCATGGCTCAGGCCATGCTTGGCACAGGTCGCCTCGATCACCCCGCGCACCTCGGCAATCATCGCATTCAACTGCTCGCCCTCCAGGTGGCGGAAGTCGAGGGTCATGCGCACTTCGCCCGGGA‑TCACGTTACGCGa > 2:113176/1‑144 (MQ=255) aCCAACTCATTGCTCAGGCCTTTCTTGGCACAGGTCGCCTCGATCACCCCGCGCACCTCGGCAATCATCGCATTCAACTGCTCGCCCTCCATGTGGCGGAAGTCGAGGGTCATGCGCACTTCGCCCGGGA‑TCACGTTACGCGAGCCCgg < 6:188371/149‑1 (MQ=255) aCCAACTCATGGCTCAGGCCATGCTTGGCACAGGTCGCCTCGATCACCCCGCGCACCTCGGCAATCATCGCATTCAACTGCTCGCCCTCCAGGTGGCGGAAGTCGAGGGTCATGCGCACTTCGCCCGGGA‑TCACGTTACGCGAGCCCgg < 8:52700/149‑1 (MQ=255) cAACTCATGGCTCAGGCCATGCTTGGCACAGGTCGCCTCGATCACCCCGCGCACCTCGGCAATCATCGCATTCAACTGCTCGCCCTCCAGGTGGCGGAAGTCGAGGGTCATGCGCACTTCGCCCGGGA‑TCACGTTACGCGAGCCCGGGt < 5:169521/149‑1 (MQ=255) tCATGGCTCAGGCCATGCTTGGCACAGGTCGCCTCGATCACCCCGCGCACCTCGGCAATCATCGCATTCAACTGCTCGCCCTCCAGGTGGCGGAAGTCGAGGGTCATGCGCACTTCGCCCGGGC‑TCGCGTAACGTGATCCCgggcgaag > 8:44318/1‑144 (MQ=255) tCATGGCTCAGGCCATGCTTGGCACAGGTCGCCTCGATCACCCCGCGCACCTCGGCAATCATCGCATTCAACTGCTCGCCCTCCAGGTGGCGGAAGTCGAGGGTCATGCGCACTTCACCCGGGC‑TCGCGTAACGTGATCCCgggc < 8:222003/145‑2 (MQ=255) tCATGGCTCAGGCCATGCTTGGCACAGGTCGCCTCGATCACCCCGCGCACCTCGGCAATCATCGCATTCAACTGCTCGCCCTCCAGGTGGCGGAAGTCGAGGGTCATGCGCACTTCACCCGGGC‑TCGCGTAACGTGATCCCgggc > 7:222003/1‑144 (MQ=255) cTCAGGCCATGCTTGGCACAGGTCGCCTCGATCACCCCGCGCACCTCGGCAATCATCGCATTCAACTGCTCGCCCTCCAGGTGGCGGAAGTCGAGGGTCATGCGCACTTCGCCCGTGA‑TCACGTTACGCGAGCCCGGGTACGCCTGAAg < 5:114030/149‑1 (MQ=255) tCAGGCCATGCTTGGCACAGGACGCCTCGATCACCCCGCGCACCTCGGCAATCATCGCATTCAACTGCTCGCCCTCCAGGTGGCGGAAGTCGAGGGTCATGCGCACTTCGCCCGGGA‑TCCCGTTACGCGAGCCCGGGTACGCCTGAAgg > 8:131682/1‑149 (MQ=255) ccATGCTTGGCACAGGTCGCCTCGATCACCCCGCGCACCTCGGCAATCATCGCATTCAACTGCTCGCCCTCCAGGTGGCGGAAGTCGAGGGTCATGCGCACTTCGCCCGGGA‑TCACGTTACGCGAGCCCGGGTACGCCTGAAGGCAAcc < 6:250107/149‑1 (MQ=255) ggCACAGGTCGCCTCGATCACCCCGCGCACCTCGGCAATCATCGCATTCAACTGCTCGCCCTCCAGGTGGCGGAAGTCGAGGGTCATGCGCACTTCGCCCGGGA‑TCACGTTACGCGAGCCCGGGTACGCCTGAAGGCAACCCACCGTGc < 8:171354/149‑1 (MQ=255) gCCTCGATCACCCCGCGCACCTCGGCAATCATCGCATTCAACTGCTCGCCCTCCAGGTGGCGGAAGTCGAGGGTCATGCGCACTTCGCCCGGGA‑TCACGTTACGCGAGCCCGGGTACGCCTGAAGGCAACCCACCGTGCCACAGGCGTg < 1:35373/149‑1 (MQ=255) ccTCGATCACCCCGCGCACCTCGGCAATCATCGCATTCAACTGCTCGCCCTCCAGGTGGCGGAAGTCGAGGGTCATGCGCACTTCGCCCGGGA‑TCACGTTACGCGAGCCCGGGTACGCCTGAAGGCAACCCACCGTGCCACAGGCGTgg < 1:253228/149‑1 (MQ=255) cTCGATCACCCCGCGCACCTCGGCAATCATCGCATTCAACTGCTCGCCCTCCAGGTGGCGGAAGTCGAGGGTCATGCGCACTTCGCCCGGGA‑TCACGTTACGCGAGCCCGGGTACGCCTGAAGGCAACCCACCGTGCCACAGGCGTggg > 2:267003/1‑149 (MQ=255) aCCCCGCGCACCTCGGCAATCATCGCATTCAACTGCTCGCCCTCCAGGTGGCGGAAGTCGAGGGTCATGCGCACTTCGCCCGGGA‑TCACGTTACGCGAGCCCGGGTACGCCTGAAGGCAACCCACCGTGCCACAGGCGTGGGGCtggtg < 1:267003/149‑1 (MQ=255) aCCCCGCGCACCTCGGCAATCATCGCATTCAACTGCTCGCCCTCCAGGTGGCGGAAGTCGAGGGTCATGCGCACTTCGCCCGGGA‑TCACGTTACGCGAGCCCGGGTACGCCTGAAGGCAACCCACCGTGCCACAGGCGTGGGGCtggtg < 2:92768/149‑1 (MQ=255) ggCAATCATCGCATTCAACTGCTCGCCCTCCAGGTGGCGGAAGTCGAGGGTCATGCGCACTTCGCCCGGGA‑TCACGTTACGCGAGCCCGGGTACGCCTGAAGGCAACCCACCGTGCCACAGGCGTGGGGCTGGTGGGCAAGCGCCGTGc > 3:129254/1‑149 (MQ=255) atcatcGCATTCAACTGCTCGCCCTCCAGGTGGCGGAAGTCGAGGGTCATGCGCACTTCGCCCGGGA‑TCACGTTACGCGAGCCCGGGTACGCCTGAAGGCAACCCACCGTGCCACAGGCGTGGGGCTGGTGGGCAAGCGCCGTGCGGtt < 2:152628/149‑1 (MQ=255) aTTCAACTGCTCGCCCTCCAGGTGGCGGAAGTCGAGGGTCATGCGCACTTCGCCCGGGA‑TCACGTTACGCGAGCCCGGGTACGCCTGAAGGCAACCCACCGTGCCACAGGCGTGGGGCTGGTGGGCAAGCGCCGTGCGGTTGACCGCct > 1:249136/1‑149 (MQ=255) tCAACTGCTCGCCCTCCAGGTGGCGGAAGTCGAGGGTCATGCGCACTTCGCCCGGGC‑TCGCGTAACGTGATCCCgg < 8:71002/76‑1 (MQ=37) tCAACTGCTCGCCCTCCAGGTGGCGGAAGTCGAGGGTCATGCGCACTTCGCCCGGGC‑TCGCGTAACGTGATCCCgg > 7:71002/1‑76 (MQ=37) tCAACTGCTCGCCCTCCAGGTGGCGGAAGTCGAGGGTCATGCGCACTTCGCCCGGGA‑TCACGTTACGCGAGCCCGGGTACGCCTGAAGGCAACCCACCGTGCCACAGGCGTGGGGCTGGTGGGCAAGCGCCGTGCGGTTGACCGCctc > 8:104245/1‑148 (MQ=255) aaCTGCTCGCCCTCCAGGTGGCGGAAGTCGAGGGTCATGCGCACTTCGCCCGGGA‑TCACGTTACGCGAGCCCGGGTACGCCTGAAGGCAACCCACCGTGCCACAGGCGTGGGGCTGGTGGGCAAGCGCCGTGCGGTTGACCGCCTCTAc > 4:248842/1‑149 (MQ=255) aaCTGCTCGCCCTCCAGGTGGCGGAAGTCGAGGGTCATGCGCACTTCGCCCGGGA‑TCACGTTACGCGAGCCCGGGTACGCCTGAAGGCAACCCACCGTGCCACAGGCGTGGGGCTGGTGGGCAAGCGCCGTGCGGTTGACCGCCTCTAc > 8:122119/1‑149 (MQ=255) aCTGCTCGCCCTCCAGGTGGCGGAAGTCGAGGGTCATGCGCACTTCGCCCGGGA‑TCACGTTACGCGAGCCCGGGTACGCCTGAAGGCAACCCACCGTGCCACAGGCGTGGGGCTGGTGGGCAAGCGCCGTGCGGTTGACCGCCTCTAc > 7:106647/1‑148 (MQ=255) cTGCTCGCCCTCCAGGTGGCGGAAGTCGAGGGTCATGCGCACTTCGCCCGGGA‑TCACGTTACGCGAGCCCGGGTACGCCTGAAGGCAACCCACCGTGCCACAGGCGTGGGGCTGGTGGGCAAGCGCCGTGCGGTTGACCGCCTCTACca < 3:248842/149‑1 (MQ=255) cTCGCCCTCCAGGTGGCGGAAGTCGAGGGTCATGCGCACTTCGCCCGGGA‑TCACGTTACGCGAGCCCGGCTACGCCTGAAGGCAACCCACCGTGCCACAGGCGTGGGGCTGGTGGGCAAGCGCCGTGCGGTTGACCGCCTCTACCACAg > 7:43284/1‑149 (MQ=255) gTCGAGGGTCATGCGCACTTCGCCCGGGA‑TCACGTTACGCGAGCCCGGGTACGCCTGAAGGCAACCCACCGTGCCACAGGCGTGGGGCTGGTGGGCAAGCGCCGTGCGGTTGACCGCCTCTACCACAGCGGCTGCCCCCACCAGGGCGt > 8:193794/1‑149 (MQ=255) tCGAGGGTCATGCGCACTTCGCCCGGGA‑TCACGTTACGCGAGCCCGGGTACGCCTGAAGGCAACCCACCGTGCCACAGGCGTGGGGCTGGTGGGCAAGCGCCGTGCGGTTGACCGCCTCTACCACAGCGGCTGCCCCCACCAGGGCGTc < 1:30501/149‑1 (MQ=255) gAGGGTCATGCGCACTTCGCCCGGGAGTCACGTTACGCGAGCCCGGGTACGCCTGAAGGCAACCCACCGTGCCACAGGCGTGGGGCTGGTGGGCAAGCGCCGTGCGGTTGACCGCCTCTACCACAGCGGCTGCCCCCACCAGGGCGTcc > 1:2580/1‑149 (MQ=255) ggTCATGCGCACTTCGCCCGGGA‑TCACGTTACGCGAGCCCGGGTACGCCTGAAGGCAACCCACCGTGCCACAGGCGTGGGGCTGGTGGGCAAGCGCCGTGCGGTTGACCGCCTCTACCACAGCGGCTGCCCCCACCAGGGCGTCCTTgc < 8:106647/149‑1 (MQ=255) cgcACTTCGCCCGGGA‑TCACGTTACGCGAGCCCGGGTACGCCTGAAGGCAACCCACCGTGCCACAGGCGTGGGGCTGGTGGGCAAGCGCCGTGCGGTTGACCGCCTCTACCACAGCGGCTGCCCCCACCAGGGCGTCCTTGCGCAGGt < 3:115156/148‑1 (MQ=255) aCTTCGCCCGGGA‑TCACGTTACGCGAGCCCGGGTACGCCTGAAGGCAACCCACCGTGCCACAGGCGTGGGGCTGGTGGGCAAGCGCCGTGCGGTTGACCGCCTCTACCACAGCGGCTGccccc < 3:33748/123‑1 (MQ=255) aCTTCGCCCGGGA‑TCACGTTACGCGAGCCCGGGTACGCCTGAAGGCAACCCACCGTGCCACAGGCGTGGGGCTGGTGGGCAAGCGCCGTGCGGTTGACCGCCTCTACCACAGCGGCTGccccc > 4:33748/1‑123 (MQ=255) ttCGCCCGGGA‑TCACGTTACGCGAGCCCGGGTACGCCTGAAGGCAACCCACCGTGCCACAGGCGTGGGGCTGGTGGGCAAGCGCCGTGCGGTTGACCGCCTCTACCACAGCGGCTGCCCCCACCAGGGCGTCCTTGCGCAg > 8:13262/1‑141 (MQ=255) ttCGCCCGGGA‑TCACGTTACGCGAGCCCGGGTACGCCTGAAGGCAACCCACCGTGCCACAGGCGTGGGGCTGGTGGGCAAGCGCCGTGCGGTTGACCGCCTCTACCACAGCGGCTGCCCCCACCAGGGCGTCCTTGCGCAg < 7:13262/141‑1 (MQ=255) ttCGCCCGGGA‑TCACGTTACGCGAGCCCGGGTACGCCTGAAGGCAACCCACCGTGCCACAGGCGTGGGGCTGGTGGGCAAGCGCCGTGCGGTTGACAGCCTCTACCACAGCGGCTGCCCCCACCAGGGCGTCCTTGCGCAGGTGCATCg > 6:112081/1‑149 (MQ=255) gtacccGGGC‑TCGCGTAACGTGATCCCGGGTACGCCTGAAGGCAACCCACCGTGCCACAGGCGTGGGGCTGGTGGGCAAGCGCCGTGCGGTTGACCGCCTCTACCACAGCGGCTGCCCCCACCAGGGCGTCCTTGCGCAGGTGCATCgg > 1:76/4‑149 (MQ=255) gCCCGGGA‑TCACGTTACGCGAGCCCGGGTACGCCTGAAGGCAACCCACCGTGCCACAGGCGTGGGGCTGGTGGGCAAGCGCCGTGCGGTTGACCGCCTCTACCACAGCGGCTGCCCCCACCAGGGCGTCCTTGCGCAGGTGCATCGGCg > 5:65151/1‑149 (MQ=255) | GGCCGTGGGCACCAACTCATGGCTCAGGCCATGCTTGGCACAGGTCGCCTCGATCACCCCGCGCACCTCGGCAATCATCGCATTCAACTGCTCGCCCTCCAGGTGGCGGAAGTCGAGGGTCATGCGCACTTCGCCCGGGA‑TCACGTTACGCGAGCCCGGGTACGCCTGAAGGCAACCCACCGTGCCACAGGCGTGGGGCTGGTGGGCAAGCGCCGTGCGGTTGACCGCCTCTACCACAGCGGCTGCCCCCACCAGGGCGTCCTTGCGCAGGTGCATCGGCG > NC_002947/4544810‑4545090 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |