Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,599,290 | G→C | 10.2% | L173L (CTC→CTG) | PP_4071 ← | membrane protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,599,290 | 0 | G | C | 10.2% | 175.0 / 8.9 | 59 | L173L (CTC→CTG) | PP_4071 | membrane protein |
Reads supporting (aligned to +/- strand): ref base G (27/26); new base C (2/4); total (29/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.71e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.74e-01 |
TTTGGCTTGGGTTCCAGACGGTACCGAAGACTCAACGTCAGTGGAGTCACTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTGGCGCCCAGCACGAGGTACCACGGCAATCGGTACAGCGCGCGACGC > NC_002947/4599143‑4599437 | tttGGCTTGGGTTCCAGACGGTACCGAAGACTCAACGTCAGTGGAGTCACTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGa < 5:137398/149‑1 (MQ=255) ttGGGTTCCAGACGGTACCGAAGACTCAACGTCAGTGGAGTCACTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGCCGGCCAgcgcag > 5:83054/1‑147 (MQ=255) ggtCCAGACGGTACCGAAGACTCAACGTCAGTGGAGTCACTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTgcgc < 7:89944/147‑1 (MQ=255) gTTCCAGACGGTACCGAAGACTCAACGTCAGTGGAGTCACTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTgcgc < 6:86367/149‑1 (MQ=255) ggTACCGAAGACTCAACGTCAGTGGAGTCACTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGCCGGCCAGCGCAGGCGCTcgcctacc < 3:192300/149‑5 (MQ=255) gACTCAACGTCAGTGGAGTCACTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCCAGCGCAGGCGCTCGCCTACCCCGTggggt < 1:242139/149‑5 (MQ=38) tCAACGTCAGTGGAGTCACTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAgc < 4:119520/120‑1 (MQ=255) tCAACGTCAGTGGAGTCACTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAgc > 3:119520/1‑120 (MQ=255) tCAACGTCAGTGGAGTCACTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTgcgc > 3:249823/1‑149 (MQ=255) aaCGTCAGTGGAGTCACTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTgcgc < 4:249823/147‑1 (MQ=255) aaCGTCAGTGGAGTCACTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGCCGGCCAGCGCAGGCGCTCGCCTACCCCGTggggtggt < 6:83054/147‑8 (MQ=37) aaCGTCAGTGGAGTAACTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCt > 8:19461/1‑149 (MQ=255) aGTCACTGCCCAGCGAATCTGCGTGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCgg < 4:57659/149‑1 (MQ=255) aGTCACTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCgg < 3:53400/149‑1 (MQ=255) gTCACTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCggg > 1:19757/1‑149 (MQ=255) ctCACTGCCCAGCGAATCTGCGGGGCCCTTCTGGCTGAAAAAGGCACCGGGCGGCACGATGATCCACCCATCATTGCAGATCCACCACACCACCGGGTAGGCGAGCGACTGCGCTGTCCGGCCCCGTGCCTGCGCCTAGTCGATGccg > 6:202920/2‑146 (MQ=255) aCTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAgc > 8:218849/1‑103 (MQ=255) aCTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAgc < 7:218849/103‑1 (MQ=255) aCTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCgggac > 5:161837/1‑146 (MQ=255) cTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGt > 5:63017/1‑136 (MQ=255) cTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGt < 6:63017/136‑1 (MQ=255) gCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTg > 3:239947/1‑110 (MQ=255) gCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTg < 4:239947/110‑1 (MQ=255) cccAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTc > 1:110526/1‑134 (MQ=255) cccAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTc < 2:110526/134‑1 (MQ=255) cccAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAAc < 2:19757/147‑1 (MQ=255) ccAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAAc > 4:172485/1‑146 (MQ=255) ccAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAAc > 5:223360/1‑146 (MQ=255) gCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGaaa < 6:150336/149‑1 (MQ=255) gCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTg > 8:25676/1‑148 (MQ=255) tGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAg > 8:144302/1‑149 (MQ=255) gATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGt < 8:155752/135‑1 (MQ=255) gATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGt > 7:155752/1‑135 (MQ=255) gATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAgc > 5:205303/1‑149 (MQ=255) aTAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAgct > 4:103022/1‑149 (MQ=255) aCCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGt < 8:246379/131‑1 (MQ=255) aCCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGt > 7:246379/1‑131 (MQ=255) gggcgggTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCgg > 1:53775/1‑149 (MQ=255) ggTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGgcctgc > 4:228984/1‑149 (MQ=255) atgatCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGt < 7:86296/92‑1 (MQ=255) atgatCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGt > 8:86296/1‑92 (MQ=255) atCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCTGGACAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTGgcgc < 6:161837/148‑1 (MQ=255) atCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTGGCGcc > 5:79968/1‑149 (MQ=255) atCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTGGCGcc < 6:79968/149‑1 (MQ=255) aCCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTGGCGCCCAg > 8:83229/1‑149 (MQ=255) cGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGTGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTGGCGCCCAGCa > 8:89892/1‑149 (MQ=255) cGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTGGCGCCCAGCa < 6:223360/149‑1 (MQ=255) atcatTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGTGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTGGCGCCCAGCACGa < 7:89892/149‑1 (MQ=255) atTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTGGCGCCCAGCACGAgg < 3:228984/148‑1 (MQ=255) atTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTGGCGCCCAGCACGAGGt < 2:53775/149‑1 (MQ=255) ttGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATa < 6:137047/108‑1 (MQ=255) aTCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTGGCGCCCAGCACGAGGTACCACgg < 3:172485/149‑1 (MQ=255) caccCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTGGCGCCCAGCACGAGGTACCACGGCAATCg > 3:19191/1‑149 (MQ=255) ccccACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTGGCGCCCAGCACGAGGTACCACGGCAATCGGt < 3:103022/149‑1 (MQ=255) ggggccggCCAGCGCAGGCGCTCGCCGGCCCCGTGCCCGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTGGCGCCCAGCACGa < 1:4915/119‑1 (MQ=255) ggggccggCCAGCGCAGGCGCTCGCCGGCCCCGTGCCAGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTGGCGCCCAGCACGa > 2:4915/7‑125 (MQ=255) tAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTGGCGCCCAGCACGAGGTACCACGGCAAt > 2:174147/1‑135 (MQ=255) tAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTGGCGCCCAGCACGAGGTACCACGGCAAt < 1:174147/135‑1 (MQ=255) cGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTGGCGCCCAGCACGAGGTACCACGGCAATCGGTACAGCGCGCGACGc > 1:99721/1‑149 (MQ=255) gAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTGGCGCCCAGc > 6:43573/1‑112 (MQ=255) gAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTGGCGCCCAGc < 5:43573/112‑1 (MQ=255) | TTTGGCTTGGGTTCCAGACGGTACCGAAGACTCAACGTCAGTGGAGTCACTGCCCAGCGAATCTGCGGGGCCGTTCTGGCTGATAAAGGCACCGGGCGGGTCGATGATCACCGCATCATTGCTGATCCACCACCCCACGGGGTAGGCGAGCGCCTGCGCTGGCCGGCCCCGTGCCTGCGCCTTGTCGATGCGGGTCAACGAGAAACTTTGATCGGTGCAGTCAATAAAGCTGCTCTTGCCGGCCTGCCTGGCGCCCAGCACGAGGTACCACGGCAATCGGTACAGCGCGCGACGC > NC_002947/4599143‑4599437 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |