Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,807,254 | G→A | 11.3% | S213F (TCC→TTC) | PP_4234 ← | bifunctional aldehyde oxidase/xanthine dehydrogenase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,807,254 | 0 | G | A | 11.3% | 138.3 / 7.3 | 54 | S213F (TCC→TTC) | PP_4234 | bifunctional aldehyde oxidase/xanthine dehydrogenase |
Reads supporting (aligned to +/- strand): ref base G (25/22); new base A (2/4); total (27/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.20e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.46e-01 |
TCCTCGGGCGGGTTGTCCAGCTGCTCGGCCATGCGCTTGGCGTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGA‑ATGGTGGGGAAC‑AGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGC‑‑‑‑GGAAGCTGCCATAAGGGTCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCCTGCTGATTGAACTGCAGCTTGCGCTTGGCCTGGCGGAA > NC_002947/4807107‑4807399 | ggcgcgggcgggTTGTCCAGCTGCTCGGCCATGCGCTTGGCGTAGAACAACCCCGGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGA‑ATGGTGGGGAAC‑AGCATGGAGTTCTTCAGGCTGga < 8:114089/145‑1 (MQ=255) tCGGGCGGGTTGTCCAGCTGCTCGGCCATGCGCTTGGCGTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGA‑ATGGTGGGGAAC‑AGCATGGAGTTCTTCAGGCTGGAGaa > 8:37386/1‑149 (MQ=255) gggTTGTCCAGCTGCTCGGCCATGCGCTTGGCGTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGA‑ATGGTGGGGAAC‑AGCATGGAGTTCTTCAGGCTGGAGAACTCAtc < 7:1463/149‑1 (MQ=255) gggTTGTCCAGCTGCTCGGCCATGCGCTTGGCGTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGA‑ATGGTGGGGAAC‑AGCATGGAGTTCTCCAGCCTGAAGAACTccat < 6:226348/149‑4 (MQ=255) gggTTGTCCAGCTGCTCGGCCATGCGCTTGGCGTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGA‑ATGGTGGGGAAC‑AGCATGGAGTTCTCCAGCCTGAAGAACTccat < 6:222680/149‑4 (MQ=255) gTTGTCCAGCTGCTCGGCCATGCGCTTGGCGTAGAACAACCCCTGCTCGGTCAGGTCGCAGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGAGATGGTGGGGAAC‑AGCATGGAGTTCTTCAGGCTGGAGAACTCAtcg < 1:192102/149‑1 (MQ=255) aGCTGCTCGGCCATGCGCTTGGCGTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGA‑ATGGTGGGGAAC‑AGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGaa < 7:8259/149‑1 (MQ=255) cGGCCATGCGCTTGGCGTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGA‑ATGGTGGGGAAC‑AGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTg > 3:33445/1‑149 (MQ=255) ggCGTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGA‑ATGGTGGGGAAC‑AGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCcacccacc < 6:121835/148‑1 (MQ=255) cGTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGA‑ATGGTGGGGAAC‑AGCATGGAGTTCTTCAGGCTGGAGAACt > 8:173206/1‑114 (MQ=255) cGTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGA‑ATGGTGGGGAAC‑AGCATGGAGTTCTTCAGGCTGGAGAACt < 7:173206/114‑1 (MQ=255) cGTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGA‑ATGGTGGGGAAC‑AGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTg < 2:110531/134‑1 (MQ=255) cGTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGA‑ATGGTGGGGAAC‑AGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTg > 1:110531/1‑134 (MQ=255) tAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGA‑ATGGTGGGGAAC‑AGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCAc > 3:203504/1‑149 (MQ=255) acaacCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGA‑ATGGTGGGGAAC‑AGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAg > 2:42119/1‑149 (MQ=255) acCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGA‑ATGGTGGGGAAC‑AGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGC‑‑‑‑g > 5:117277/1‑148 (MQ=255) cTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGA‑ATGGTGGGGAAC‑AGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGC‑‑‑‑GGAAGc > 8:108487/1‑149 (MQ=255) cTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGA‑ATGGTGGGGAAC‑AGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGC‑‑‑‑GGAAGCTGc < 1:163688/149‑1 (MQ=255) gTCAGGTCGCCGTGCTCGTTGGGCTGCTTCGACCACAACGGCTTGCGCTTGAGA‑ATGGTGGGGAAC‑AGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGC‑‑‑‑GGAAGCTGCCAt > 8:12795/1‑148 (MQ=255) tgaGGTAGTCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGATA‑ATGGTGGTGAAC‑ATCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTAGAACGGCGTGGCTCCACCCACCCGCACGAAGC‑‑‑‑GGAAGCTGCCAt < 6:164522/145‑1 (MQ=255) gTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGA‑ATGGTGGGGAAC‑AGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGcc < 8:148420/114‑1 (MQ=255) gTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGA‑ATGGTGGGGAAC‑AGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGcc > 7:148420/1‑114 (MQ=255) tCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGA‑ATGGTGGGGAAC‑AGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGC‑‑‑‑GGAAGCTGCCATAAGGGTc > 8:155932/1‑149 (MQ=255) ttGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGA‑ATGGTGGGGAAC‑AGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGC‑‑‑‑GGAAGCTGCCATAAGGGTCGCGCTGGTACAg < 8:20506/149‑1 (MQ=255) tGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGA‑ATGGTGGGGAAC‑AGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGC‑‑‑‑GGAAGCTGCCATAAGGGTCGCGCTGGTACAgc > 2:81068/1‑149 (MQ=255) ggCTGCTTCGACCACACCGGCTTGCGGTTGAGA‑ATGGTGGGGAAC‑AGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGC‑‑‑‑GGAAGCTGCCATAAGGGTCGCGCTGGTACAgcgg < 3:198920/149‑1 (MQ=255) ctgctTCGACCACACCGGCTTGCGGTTGAGA‑ATGGTGGGGAACGAGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGC‑‑‑‑GGAAGCTGCCATAAGGGTCGCGCTGGTACAgcggc > 1:52010/1‑149 (MQ=255) ctTCGACCACACCGGCTTGCGGTTGAGA‑ATGGTGGGGAAC‑AGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCCCCACCCACCCGCACGAAGC‑‑‑‑GGAAGCTGCCATAAGGGTCGCGCTGGTACAGCGGCGCCt > 4:30939/1‑149 (MQ=255) ttCGACCACACCGGCTTGCGGTTGAGA‑ATGGTGGGGAAC‑AGCATGGAGTTCTTCAGGCTGGAGAACTCATAGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGC‑‑‑‑GGAAGCTGCAATAAGGGTCGCGCTGGTACAGCGGCGCCTg > 7:118233/1‑149 (MQ=255) cGACCACACCGGCTTGCGGTTGAGA‑ATGGTGGGGAAC‑AGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGC‑‑‑‑GGAAGCTGCCATAAGGGTCGCGCTGGTACAGCGGCGCCTg < 6:117277/147‑1 (MQ=255) gACCACACCGGCTTGCGGTTGAGA‑ATGGTGGGGAAC‑AGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGC‑‑‑‑GGAAGCTGCCATAAGGGTCGCGCTGGTACAGCGGCGCCTggg < 3:30939/148‑1 (MQ=255) cacaCCGGCTTGCGGTTGAGA‑ATGGTGGGGAAC‑AGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGC‑‑‑‑GGAAGCTGCCATAAGGGTCGCGCTGGTACAGCGGCGCCTGGGCAcc > 4:204993/1‑149 (MQ=255) acacCGGCTTGCGGTTGAGA‑ATGGTGGGGAAC‑AGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGC‑‑‑‑GGAAGCTGCCATAAGGGTCGCGCTGGTACAGCGGCGCCTGGGCACCg > 8:130702/1‑149 (MQ=255) cacCGGCTTGCGGTTGAGA‑ATGGTGGGGAAC‑AGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGC‑‑‑‑GGAAGCTGCCATAAGGGTCGCGCTGGTACAGCGGCGCCTGGGCACCg > 3:240858/1‑148 (MQ=255) cGGCTTGCGGTTGAGA‑ATGGTGGGGAAC‑AGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGC‑‑‑‑GGAAGCTGCCATAAGGGTCGCGCTGGTACAGCGGCGCCTGGGCACCGTAAc < 4:33445/149‑1 (MQ=255) cGGCTTGCGGTTGAGA‑ATGGTGGGGAAC‑AGCATGGAGTTCTTCAGGCTGGAGAAATCATCGTCGTCGAACGGCTTGCCGCCACCCACCCCCACGAAGC‑‑‑‑GGAAGCTCCCATAAGGTACCCGCTGGTACAccggc > 6:63289/1‑133 (MQ=255) ggCTTGCGGTTGAGA‑ATGGTGGGGAAC‑AGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGC‑‑‑‑GGAAGCTGCCATAAGGGTCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACg < 4:240858/149‑1 (MQ=255) ctgTTGAGA‑ATGGTGGGGAAC‑TTCATGGAGTTCTTCAGGCTGGAGTACTAATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGC‑‑‑‑GGAAGCTGCCATAAGTGTCGCGCTTGTACAGCGGCGACTgtg < 7:97904/131‑3 (MQ=255) tGAGA‑ATGGTGGGGAAC‑AGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGC‑‑‑‑GGAAGCTGCCATAAGGGTCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCctgc > 3:169184/1‑149 (MQ=255) gaga‑ATGGTGGGGAAC‑AGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGC‑‑‑‑GGAAGCTGCCATAAGGGTCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCctgc < 7:155932/148‑1 (MQ=255) ga‑ATGGTGGGGAAC‑AGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGC‑‑‑‑GGAAGCTGCCATAAGGGTCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCCTGCTGa < 1:42119/149‑1 (MQ=255) aTGGTGGGGAAC‑AGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGC‑‑‑‑GGAAGCTGCCATAAGGGTCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCCTGCTGAt < 7:37386/148‑1 (MQ=255) gtggGGAAC‑AGCATGGAGTTCTTCAGGCTTGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGC‑‑‑‑GGAAGCTGCCATAAGGGTCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCCTGCTGATTGaa < 3:204993/149‑1 (MQ=255) gtggGGAAC‑AGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGC‑‑‑‑GGAAGCTGCCATAAGGGTCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCCTGCTGATTGaa < 7:108487/149‑1 (MQ=255) ggggTAC‑AGGATTCAGTTGTTCTGTCTTGAGAATTCATCTTCGTGGTACTGCGTGGTGCCACCCACCCCCCCGTACCACATGGAAGCTGCCATAAGGGTCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCCTGCTGAtt < 1:219033/148‑1 (MQ=255) gacgatgAGTTCTCCAGCCTGAAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGC‑‑‑‑GGAAGCTGCCATAAGGGTCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCCTGCTGATTGAACTGCAGCtt > 3:179873/7‑149 (MQ=255) cATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGC‑‑‑‑GGAAGCTGCCATAAGGGTCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCCTGCTGATTGAACTGCAGCTTgc > 4:108240/1‑149 (MQ=255) gatgAGTTCTCCAGCCTGAAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGC‑‑‑‑GGAAGCTGCCATAAGGGTCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCCTGCTGATTGAACTGCAGCTTgcg > 1:165437/4‑149 (MQ=255) cgatctcttcAGGGTGTAGAACTCATCGTAGTCTAACGGCGTGGCGCCACCCACCCGCACGAAGC‑‑‑‑GGAAGCTGCCATAAGGGTCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCCTGCTGATTGAACTGCAGCTTgcgc < 8:246611/143‑1 (MQ=255) gTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGC‑‑‑‑GGAAGCTGCCATAAGGGTCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCCTGCTGATTGAACTGCAGCTTGCGCTTgg > 2:186123/1‑149 (MQ=255) cttcAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGC‑‑‑‑GGAAGCTGCCATAAGGGTCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCCTGCTGATTGAACTGCAGCTTGCGCTTGGCCt > 3:195860/1‑149 (MQ=255) ttcAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGC‑‑‑‑GGAAGCTGCCATAAGGGTCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCCTGCTGATTGAACTGCAGCTTccgc > 7:246611/1‑141 (MQ=255) tcAGGCTGGAGAACTCATCGTCGTCGAACGGCGTCGCGCCAACCACCCGCACGAAGC‑‑‑‑GGAAGCTGCCATAAGGGTCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCCTGCTGATTGAAATGCAGCTTGCGCATGGCCTgg > 8:188305/1‑149 (MQ=255) cAGCCTGAAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGC‑‑‑‑GGAAGCTGCCATAAGGGTCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCCTGCTGATTGAACTGCAGCTTGCGCTTGGCCTGGc < 2:165437/149‑1 (MQ=255) cTGAAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGC‑‑‑‑GGAAGCTGCCATAAGGGTCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCCTGCTGATTGAACTGCAGCTTGCGCTTGGCCTGGCGGaa < 4:179873/149‑1 (MQ=255) | TCCTCGGGCGGGTTGTCCAGCTGCTCGGCCATGCGCTTGGCGTAGAACAACCCCTGCTCGGTCAGGTCGCCGTGCTGGTTGGGCTGCTTCGACCACACCGGCTTGCGGTTGAGA‑ATGGTGGGGAAC‑AGCATGGAGTTCTTCAGGCTGGAGAACTCATCGTCGTCGAACGGCGTGGCGCCACCCACCCGCACGAAGC‑‑‑‑GGAAGCTGCCATAAGGGTCGCGCTGGTACAGCGGCGCCTGGGCACCGTAACGGATCGCCTGCTGATTGAACTGCAGCTTGCGCTTGGCCTGGCGGAA > NC_002947/4807107‑4807399 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |