Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,917,691 | C→T | 11.3% | I30I (ATC→ATT) ‡ | PP_4328 → | hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,917,691 | 0 | C | T | 11.3% | 117.2 / 5.5 | 46 | I30I (ATC→ATT) ‡ | PP_4328 | hypothetical protein |
Reads supporting (aligned to +/- strand): ref base C (19/20); new base T (3/2); total (23/23) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01 |
ATTATTACACGCGCCGCCGCGCTGCCAAGAGGCCGGGCTCGACAGGTTGTATACAATCATGACTGAAATCAATAGTCTCGGCGCACAAACCGCGATCAACAGCCAAGCCATGAAGGCGGGCATGACCGGCGATCTGCTGCGCCTGATCCAGGCGCAGCCTGGGTTGCTAGCTCCTGGCGAAACCGCGCAAGCCGAGGTTTTATCGTTGCGTCAGACGGGCCAGGACTTTCAGCTGGTGCTACGGCTGATGCAGGCCAACGGCGTGCAGACCCAGCTTCAGGCCAACGCCAGCCAGC > NC_002947/4917544‑4917839 | attattACACGCGCCGCCGCGCTGCCAAGAGGCCGGGCTCGACAGGTTGTATACAATCATGACTGAAATCAATAGTCTCGGCGCACAAACCGCGATCAACAGCCAAGCCATGAAGGCGGGCATGACCGGCGATCTGCTGCGCCTGATc > 6:111305/1‑148 (MQ=255) ccgccgcGCTGCCAAGAGGCCGGGCTCGACAGGTTGTATACAATCATGACTGAAATCAATAGTCTCGGCGCACAAACCGCGATCAACAGCCAAGCCATGAAGGCGGGCATGACCGGCGATCTGCTGCGCCTGATCCAGGCGCAGCCTgg < 4:263671/149‑1 (MQ=255) ccgcGCTGCCAAGAGGCCGGGCTCGACAGGTTGTATACAATCATGACTGAAATCAATAGTCTCGGCGCACAAACCGCGATCAACAGCCAAGCCATGAAGGCGGGCATGACCGGCGATCTGCTGCGCCTGATCCAGGCGCAGCCTGGGtt < 2:149161/149‑1 (MQ=255) gcgcTGCCAAGAGGCCGGGCTCGACAGGTTGTATACAATCATGACTGAAATCAATAGTCTCGGCGCACAAACCGCGATCAACAGCCAAGCCATGAAGGCGGGCATGACCGGCGATCTGCTGCGCCTGGATCAGGCGCAg > 1:252735/1‑139 (MQ=255) gcgcTGCCAAGAGGCCGGGCTCGACAGGTTGTATACAATCATGACTGAAATCAATAGTCTCGGCGCACAAACCGCGATCAACAGCCAAGCCATGAAGGCGGGCATGACCGGCGATCTGCTGCGCCTGGATCAGGCGCAg < 2:252735/139‑1 (MQ=255) cgcTGCCAAGAGGCCGGGCTCGACAGGTTGTATACAATCATGACTGAAATCAATAGTCTCGGCGCACAAACCGCGATCAACAGCCAAGCCATGAAGGCGGGCATGACCGGCGATCTGCTGCGCCTGATCCAGGCGCAGCCTGGGTTGCt < 5:111305/149‑1 (MQ=255) cgcTGCCAAGAGGCCGGGCTCGACAGGTTGTATACAATCATGACTGAAATCAATAGTCTCGGCGCACAAACCGCGATCAACAGCCAAGCCATGAAGGCGGGCATGACCGGCGATCTGCTGCGCCTGATCCAGGCGCAGCCTGGGTTGCt < 2:239264/149‑1 (MQ=255) aaGAGGCCGGGCTCGACAGGTTGTATACAATCATGACTGAAATCAATAGTCTCGGCGCACAAACCGCGATCAACAGCCAAGCCATGAAGGCGGGCATGACCGGCGATCTGCTGCGCCTGATCCAGGCGCAGCCTGGGTTGCTAGCTCCt < 5:76840/149‑1 (MQ=255) aaGAGGCCGGGCTCGACAGGTTGTATACAATCATGACTGAAATCAATAGTCTCGGCGCACAAACCGCGATCAACAGCCAAGCCATGAAGGCGGGCATGACCGGCGATCTGCTGCGCCTGATCCAGGCGCAGCCTGGGTTGCTAGCTCCt > 5:249777/1‑149 (MQ=255) agagGCCGGGCTCGACAGGTTGTATACAATCATGACTGAAATCAATAGTCTCGGCGCACAAACCGCGATCAACAGCCAAGCCATGAAGGCGGGCATGACCGGCGATCTGCTGCGCCTGATCCAGGCGCAGCCTGGGTTGCTAGCTCCTg < 8:112687/149‑1 (MQ=255) gCCGGGCTCGACAGGTTGTATACAATCATGACTGAAATCAATAGTCTCGGCGCACAAACCGCGATCAACAGCCAAGCCATGAAGGCGGGCATGACCGGCGATCTGCTGCGCCTGATCCAGGCGCAGCCTGGGTTGCt > 1:209830/1‑137 (MQ=255) gCCGGGCTCGACAGGTTGTATACAATCATGACTGAAATCAATAGTCTCGGCGCACAAACCGCGATCAACAGCCAAGCCATGAAGGCGGGCATGACCGGCGATCTGCTGCGCCTGATCCAGGCGCAGCCTGGGTTGCt < 2:209830/137‑1 (MQ=255) gCCGGGCTCGACAGGTTGTATACAATCATGACTGAAATCAATAGTCTCGGCGCACAAACCGCGATCAACAGCCAAGCCATGAAGGCGGGCATGACCGGCGATCTGCTGCGCCTGATCCAGGCGCAGCCTGGGTTGCTAGCTCCTGGCg > 6:183171/1‑148 (MQ=255) gCCGGGCTCGACAGGTTGTATACAATCATGACTGAAATCAATAGTCTCGGCGCACAAACCGCGATCAACAGCCAAGCCATGAAGGCGGGCATGACCGGCGATCTGCTGCGCCTGATCCAGGCGCAGCCTGGGTTGCTAGCTCCTGGCg > 7:2351/1‑148 (MQ=255) gCTCGACAGGTTGTATACAATCATGACTGAAATCAATAGTCTCGGCGCACAAACCGCGATCAACAGCCAAGCCATGAAGGCGGGCATGACCGGCGATCTGCTGCGCCTGATCCAGGCGCAGCCTGGGTTGCTAGCTCCTGGCGAAACcg < 8:2351/149‑1 (MQ=255) tataCAATCATGACTGAAATCAATAGTCTCGGCGCACAAACCGCGATCAACAGCCAAGCCATGAAGGCGGGCATGACCGGCGATCTGCTGCGCCTGATCCAGGCGCAGCCTGGGTTGCTAGCTCCTGGCGAAACCGCGCAAGCCGAgg < 5:183171/148‑1 (MQ=255) taCAATCATGACTGAAATCAATAGTCTCGGCGCACAAACCGCGATCAACAGCCAAGCCATGAAGGCGGGCATGACCGGCGATCTGCTGCGCCTGATCCAGGCGCAGCCTGGGTTGCTAGCTCCTGGCGAAACCGCGCAAGCCGAGGtt < 3:98008/148‑1 (MQ=255) aCAATCATGACTGAAATCAATAGTCTCGGCGCACAAACCGCGATCAACAGCCAAGCCATGAAGGCGGGCATGACCGGCGATCTGCTGCGCCTGATCCAGGCGCAGACTGGGTTGCTAGCTCCTGGCGAAACCGCGCAAGCCGAGGttt > 1:138023/1‑148 (MQ=255) taaTCATGACTGAAATCAATAGTCTCGGCGCACAAACCGCGATCAACAGCCAAGCCATGAAGGCAGGCATGACCGGCGATCTGCTGCGCCTGATCCAGGCGCAGCCTGGGTTGCTAGCTCCTGGCGAAACCGCGCAAGCCGAGGTTTTa < 5:115565/148‑1 (MQ=255) aTCATGACTGAAATCAATAGTCTCGGCGCACAAACCGCGATCAACAGCCAAGCCATGAAGGCAGGCATGACCGGCGATCTGCTGCGCCTGATCCAGGCGCAGCCTGGGTTGCTAGCTCCTGGCGAAACCGCGCAAGCCGAGGTTTTa > 6:115565/1‑147 (MQ=255) tCATGACTGAAATCAATAGTCTCGGCGCACAAACCGCGATCAACAGCCAAGCCATGAAGGCGGGCATGACCGGCGATCTGCTGCGCCTGATCCAGGCGCAGCCTGGGTTGCTAGCTCCTGGCGAAACCGCGCAAGCCGAGGTTTTATCg > 5:4045/1‑149 (MQ=255) aTGACTGAAATCAATAGTCTCGGCGCACAAACCGCGATCAACAGCCAAGCCATGAAGGCGGGCATGACCGGCGATCTGCTGCGCCTGATCCAGGCGCAGCCTGGGTTGCTAGCTCCTGGCGAAACCGCGCAAGCCGAGGTTTTATCGtt > 1:258050/1‑149 (MQ=255) tAGTCTCGGCGCACAAACCGCGATCAACAGCCAAGCCATGAAGGCGGGCATGACCGGCGATCTGCTGCGCCTGATCCAGGCGCAGCCTGGGTTGCTAGCTCCTGGCGAAACCGCGCAAGCCGAGGTTTTATCGTTGCGTCAGACGGGc > 5:180553/1‑148 (MQ=255) tcGGCGCACAAACCGCGATCAACAGCCAAGCCATGAAGGCGGGCATGACCGGCGATCTGCTGCGCCTGGATCAGGCGCa > 1:163890/1‑79 (MQ=39) tcGGCGCACAAACCGCGATCAACAGCCAAGCCATGAAGGCGGGCATGACCGGCGATCTGCTGCGCCTGGATCAGGCGCa < 2:163890/79‑1 (MQ=39) ggCGCACAAACCGCGATCAACAGCCAAGCCATGAAGGCGGGCATGACCGGCGATCTGCTGCGCCTGATCCAGGCGCAGCCTGGGTTGCTAGCTCCTGGCGAAACCGCGCAAGCCGAGGTTTTATCGTTGCGTCAGACGGGCCAGGAc < 6:4045/147‑1 (MQ=255) cacaAACCGCGATCAACAGCCAAGCCATGAAGGCGGGCATGACCGGCGATCTGCTGCGCCTGATCCAGGCGCAGCCTGGGTTGCTAGCTCCTGGCGAAACCGCGCAAGCCGAGGTTTTATCGTTGCGTCAGACGGGCCAGGACttt > 2:72581/1‑146 (MQ=255) cacaAACCGCGATCAACAGCCAAGCCATGAAGGCGGGCATGACCGGCGATCTGCTGCGCCTGATCCAGGCGCAGCCTGGGTTGCTAGCTCCTGGCGAAACCGCGCAAGCCGAGGTTTTATCGTTGCGTCAGACGGGCCAGGACttt < 1:72581/146‑1 (MQ=255) acaAACCGCGATCAACAGCCAAGCCATGAAGGCGGGCATGACCGCCGATCTGCTGCGCCTGATACAGGCGCAGCCTGGGTTGCTAGCTCCTGGCGAAACCGCGCAAGCCGAGGTTTTATCGTTGCGTCAGACGCGCCAGGACTTTCAGc > 5:237367/1‑149 (MQ=255) aaaCCGCGATCAACAGCCAAGCCATGAAGGCGGGCATGACCGGCGATCTGCTGCGCCTGATCCAGGCGCAGCCTGGGTTGCTAGCTCCTGGCGAAACCGCGCAAGCCGAGGTTTTATCGTTGCGTCAGACGGGCCAGGACTTTCAGCTg > 5:14679/1‑149 (MQ=255) aCCGCGATCATCAGCCAAGCCATGAAGGCGGGCTTGACCGGGGATCTGCTGCGCCTGATGCAGGGGCAGCCTGGGTTGCTAGCTCCTGGCGAAACCGCGCAAGCCGAGGTTTTATCGTTGCGTCAGACGGGCCAGGACTTTCAGCTGGt < 6:237367/149‑1 (MQ=255) aCCGCGATCAACAGCCAAGCCATGAAGGCGGGCATGACCGGCGATCTGCTGCGCCTGATCCAGGCGCAGCCTGGGTTGCTAGCTCCTGGCGAAACCGCGCAAGCCGAGGTTTTATCGTTGCGTCAGACGGGCCAGGACTTTCAGCTGGt < 1:34285/149‑1 (MQ=255) ccGCGATCAACAGCCAAGCCATGAAGGCGGGCATGACCGGCGATCTGCTGCGCCTGATCCAGGCGCAGCCTGGGTTGCTAGCTCCTGGCGAAACCGCGCAAGCCGAGGTTTTATCGTTGCGTCAGACGGGCCAGGAc < 4:196791/137‑1 (MQ=255) ccGCGATCAACAGCCAAGCCATGAAGGCGGGCATGACCGGCGATCTGCTGCGCCTGATCCAGGCGCAGCCTGGGTTGCTAGCTCCTGGCGAAACCGCGCAAGCCGAGGTTTTATCGTTGCGTCAGACGGGCCAGGAc > 3:196791/1‑137 (MQ=255) gATCAACAGCCAAGCCATGAAGGCGGGCATGACCGGCGATCTGCTGCGCCTGATCCAGGCGCAGCCTGGGTTGCTAGCTCCTGGCGAAACCGCGCAAGCCGAGGTTTTATCGTTGCGTCAGACGGGCCAGGACTTTCAGCTGGTGCTAc < 6:249777/149‑1 (MQ=255) aaCAGCCAAGCCATGAAGGCGGGCATGACCGGCGATCTGCTGCGCCTGATCCAGGCGCAGCCTGGGTTGCTAGCTCCTGGCGAAACCGCGCAAGCCGAGGTTTTATCGTTGCGTCAGACGGGCCAGGACTTTCAGCTGGTGCTACGGc < 2:258050/148‑1 (MQ=255) aaCAGCCAAGCCATGAAGGCGGGCATGACCGGCGATCTGCTGCGCCTGATCCAGGCGCAGCCTGGGTTGCTAGCTCCTGGCGAAACCGCGCAAGCCGAGGTTTTATCGTTGCGTCAGACGGGCCAGGACTTTCAGCTGGTGCTACGGCt > 1:131957/1‑149 (MQ=255) gccaagccaTGAAGGCGGGCATGACCGGCGATCTGCTGCGCCTGATCCAGGCGCAGCCTGGGTTGCTAGCTCCTGGCGAAACCGCGCAAGCCGAGGTTTTATCGTTGCGTCAGACGGGCCAGGACTTTCAGCTGGTGCTACGGCTGATg > 7:83268/1‑149 (MQ=255) gccaagccaTGAAGGCGGGCATGACCGGCGATCTGCTGCGCCTGATCCAGGCGCAGCCTGGGTTGCTAGCTCCTGGCGAAACCGCGCAAGCCGAGGTTTTATCGTTGCGTCAGACGGGCCAGGACTTTCAGCTGGTGCTACGGCTGATg > 3:34049/1‑149 (MQ=255) aagccaTGAAGGCGGGCATGACCGGCGATCTGCTGCGCCTGATCCAGGCGCAGCCTGGGTTGCTAGCTCCTGGCGAAACCGCGCAAGCCGAGGTTTTATCGTTGCGTCAGACGGGCCAGGACTTTCAGCTGGTGCTACGGCTGATGCAg < 8:83268/149‑1 (MQ=255) aagccaTGAAGGCGGGCATGACCGGCGATCTGCTGCGCCTGATCCAGGCGCAGCCTGGGTTGCTAGCTCCTGGCGAAACCGCGCAAGCCGAGGTTTTATCGTTGCGTCAGACGGGCCAGGACTTTCAGCTGGTGCTACGGCTGATGCAg < 4:34049/149‑1 (MQ=255) gccaTGAAGGCGGGCATGACCGGCGATCTGCTGCGCCTGATCCAGGCGCAGCCTGGGTTGCTAGCTCCTGGCGAAACCGCGCAAGCCGAGGTTTTATCGTTGCGTCAGACGGGCCAGGACTTTCAGCTGGTGCTACGGCTGATGCAGGc > 6:144221/1‑149 (MQ=255) aCCGGCGATCTGCTGCGCCTGATCCAGGCGCAGCCTGGGTTGCTAGCTCCTGGCGAAACCGCGCAAGCCGAGGTTTTATCGTTGCGTCAGACGGGCCAGGACTTTCAGCTGGTGCTACGGCTGATGCAGGCCAACGGCGTGCAGAccc < 2:138023/148‑1 (MQ=255) ggCGATCTGCTGCGCCTGATCCAGGCGCAGCCTGGGTTGCTAGCTCCTGGCGAAACCGCGCAAGCCGAGGTTTTATCGTTGCGTCAGACGGGCCAGGACTTTCAGCTGGTGCTACGGCTGATGCAGGCCAACGGCGTGCAGACCCAGCt > 7:75594/1‑149 (MQ=255) gctgcGCCTGGATCAGGCGCAGCCTGGGTTGCTAGCTCCTGGCGAAACCGCGCAAGCCGAGGTTTTATCGTTGCGTCAGACGGGCCAGGACTTTCAGCTGGTGCTACGGCTGATGCAGGCCAACGGCGTGCAGACCCAGCTTCAGGcc > 6:129359/1‑148 (MQ=255) cgcCTGATCCAGGCGCAGCCTGGGTTGCTAGCTCCTGGCGAAACCGCGCAAGCCGAGGTTTTATCGTTGCGTCAGACGGGCCAGGACTTTCAGCTGGTGCTACGGCTGATGCAGGCCAACGGCGTGCAGACCCAGCTTCAGGCCAACgc > 4:100735/1‑149 (MQ=255) ccTGATCCAGGCGCAGCCTGGGTTGCTAGCTCCTGGCGAAACCGCGCAAGCCGAGGTTTTATCGTTGCGTCAGACGGGCCAGGACTTTCAGCTGGTGCTACGGCTGATGCAGGCCAACGGCGTGCAGACCCAGCTTCAGGCCAACgc > 4:249419/1‑147 (MQ=255) ccAGGCGCAGCCTGGGTTGCTAGCTCCTGGCGAAACCGCGCAAGCCGAGGTTTTATCGTTGCGTCAGACGGGCCAGGACTTTCAGCTGGTGCTACGGCTGATGCAGGCCAACGGCGTGCAGACCCAGCTTCAGGCCAACGCcagccagc > 3:192728/1‑149 (MQ=255) | ATTATTACACGCGCCGCCGCGCTGCCAAGAGGCCGGGCTCGACAGGTTGTATACAATCATGACTGAAATCAATAGTCTCGGCGCACAAACCGCGATCAACAGCCAAGCCATGAAGGCGGGCATGACCGGCGATCTGCTGCGCCTGATCCAGGCGCAGCCTGGGTTGCTAGCTCCTGGCGAAACCGCGCAAGCCGAGGTTTTATCGTTGCGTCAGACGGGCCAGGACTTTCAGCTGGTGCTACGGCTGATGCAGGCCAACGGCGTGCAGACCCAGCTTCAGGCCAACGCCAGCCAGC > NC_002947/4917544‑4917839 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |