Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,047,268 | T→G | 8.3% | intergenic (+249/+199) | PP_5683 → / ← PP_5684 | hypothetical protein/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,047,268 | 0 | T | G | 8.3% | 176.5 / 4.7 | 58 | intergenic (+249/+199) | PP_5683/PP_5684 | hypothetical protein/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base T (30/23); new base G (2/3); total (32/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.48e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CGCTTGCCTTTCGGAGTATCCATCAACTTCCACCGAGTCATCTCAGATACACTTGGCGTCAGGAAGCGTCGGCACGACAACCGTTCCATCAAGGGCCCACCTATGACCACAATACCGAGCAAGGGGAATGATAAGCAGGCCTCTGATGCCTGCGACCGTAAAATTGGTCGCAAACGACCTGCCTTTCTGAATCAGGACACGCTTGACCGCATTGCCCATGAACATGCGGATGAACTAAAGCAGCTGGGTTCGCGCCAGGAAAAGCGTTGAAGTGACGTTGCTGCCC > NC_002947/5047122‑5047407 | cGCTTGCCTTTCGGTGTATCCATCAACTTCAACCGAGTCATCTCAGATACTCTTGGCGTCAGGAAGCGTCGGCACGACAACCGTTCCATCAAGGGCCCACCTATGACCACAATACCTAGCAAGGGGAATGATATGAAGGCCTCTGATGc < 2:93625/149‑1 (MQ=255) cGCTTGCCTTTCGGAGTATCCATCAACTTCCACCGAGTCATCTCAGATACACTTGGAGTCAGGAAGCTTCGGCACGACAACCGTTCCATCAAGGGCCCACCTATGACCACAATACCGAGCAAGGGGAATGATAAGCAGGCCTCTGAt < 5:154398/147‑1 (MQ=255) gCTTGCCTTTCGGAGTATCCATCAACTTCCACCGAGTCATCTCAGATACACTTGGCGTCAGGAAGGGTCGGCACGACAACCGTTCCATCAAGGGCCCACCTATGACCACAATACCGAGCAAGGGGAATGATAAGCTGGCCTCTGATGcc < 2:182769/149‑1 (MQ=255) gCCTTTCGGAGTATCCATCAACTTCCACCGAGTCATCTCAGATACACTTGGCGTCAGGAAGCGTCGGCACGACAACCGTTCCATCAAGGGCCCACCTATGACCACAATACCGAGCAAGGGGAATGATAAGCAGGCCTCTGATGCCTGc > 3:228492/1‑148 (MQ=255) ccTTTCGGAGTATCCATCAACTTCCACCGAGTCATCTCAGATACACTTGGCGTCAGGATGCGTCGGCACGACAACCGTTCCATCAAGGGCCCACCTATGACCACAATACCGAGCAAGGGGAATGATAAGCAGGCCTCTGATGCCTGCg < 1:167661/148‑1 (MQ=255) ccTTTCGGAGTATCCATCAACTTCCACCGAGTCATCTCAGATACACTTGGCGTCAGGAAGCGTCGGCACGACAACCGTTCCATCAAGGGCCCACCTATGACCACAATACCGAGCAAGGGGAATGATAAGCAGGCCTCTGATGCCTGCGa < 6:73897/149‑1 (MQ=255) cTTTCGGAGTATCCATCAACTTCCACCGAGTCATCTCAGATACACTTGGCGTCAGGAAGCGTCGGCACGACAACCGTTCCATCAAGGGCCCACCTATGACCACAATACCGAGCAAGGGGAATGATAAGCAGGCATCAGAGGCCTGctta < 3:256769/149‑4 (MQ=255) tttCGGAGTATCCATCAACTTCCACCGAGTCATCTCAGATACACTTGGCGTCAGGAAGCGTCGGCACGACAACCGTTCCATCAAGGGCCCACCTATGACCACAATACCGAGCAAGGGGAATGATAAGCAGGCCTCTGATGCCTGCGAcc > 2:242544/1‑149 (MQ=255) tCGGAGTATCCATCAACTTCCACCGAGTCATCTCAGATACACTTGGCGTCAGGAAGCGTCGGCACGACAACCGTTCCATCAAGGGCCCACCTACGACCACAATACCGAGCAAGGGGAATGATAAGCAGGCCTCTGATGCCTGCGAcc < 4:193398/147‑1 (MQ=255) aGTATCCATCAACTTCCACCGAGTCATCTCAGATACACTTGGCGTCAGGAAGCGTCGGCACGACAACCGTTCCATCAAGGGCCCACCTATGACCACAATACCGAGCAAGGGGAATGATAAGCAGGCCTCTGATGCCTGCGACCGTaaaa < 6:133193/149‑1 (MQ=255) tCCATCAACTTCCACCGAGTCATCTCAGATACACTTGGCGTCAGGAAGCGTCGGCACGACAACCGTTCCATCAAGGGCCCACCTATGACCACAATACCGAGCAAGGGGAATGATAAGCAGGCCTCTGATGCCTGCGACCGTAAAATTgg < 1:242544/149‑1 (MQ=255) aTCAACTTCCACCGAGTCATCTCAGAAACACTTGGCGTCAGGAAGCGTCGGCACGACAACCGTTCCATCAAGGGCCCACCTATGACCACAATACCGAGCAAGGGGAATGATAAGCAGGCCTCTGATGCCTGCGACCGTAAAATTGGTCg > 1:6338/1‑149 (MQ=255) ttCCACCGAGTCATCTCAGATACACTTGGCGTCAGGAAGCGTCGGCACGACAACCGTTCCATCAAGGGCCCACCTATGACCACAATACCGAGCAAGGGGAATGATAAGCAGGCCTCTGATGCCTGCGACCGTAAAATTGGTCgtttgcg > 3:263439/1‑143 (MQ=255) ttCCACCGAGTCATCTCAGATACACTTGGCGTCAGGAAGCGTCGGCACGACAACCGTTCCATCAAGGGCCCACCTATGACCACAATACCGAGCAAGGGGAATGATAAGCAGGCCTCTGATGCCTGCGACCGTAAAATTGGTCGCAAAc > 8:189847/1‑148 (MQ=255) gTCATCTCAGATACACTTGGCGTCAGGAAGCGTCGGCACGACAACCGTTCCATCAAGGGCCCACCTATGACCACAATACCGAGCAAGGGGAATGATAAGCAGGCCTCTGATGCCTGCGACCGTAAAATTGGTCGCAAACGACCTGCCtt > 8:130048/1‑149 (MQ=255) aTCTCAGATACACTTGGCGTCAGGAAGCGTCGGCACGACAACCGTTCCAACAAGGGCCCACCTATGACCACAATACCGAGCAAGGGGAATGATAAGCAGGCCTCTGATGCCTGCGACCGTAAAATTGGTCGCAAACGACCTGCCTTTCt > 2:209928/1‑149 (MQ=255) tcAGATACACTTGGCGTCAGGAAGCGTCGGCACGACAACCGTTCCATCAAGGGCCCACCTATGACCACAATACCGAGCAAGGGGAATGATAAGCAGGCCTCTGATGCCTGCGACCGTAAAATTGGTCGCAAACGACCTGCCTTTCTGaa > 3:64749/1‑149 (MQ=255) aGATACACTTGGCGTCAGGAAGCGTCGGCACGACAACCGTTCCATCAAGGGCCCACCTATGACCACAATACCGAGCAAGGGGAATGATAAGCAGGCCTCTGATGCCTGCGACCGTAAAATTGGTCGCAAACGACCTGCCTTTCTGa < 7:130048/146‑1 (MQ=255) gATACACTTGGCGTCAGGAAGCGTCGGCACGACAACCGTTCCATCAAGGGCCCACCTATGACCACAATACCGAGCAAGGGGAATGATAAGCAGGCCTCTGATGCCTGCGACCGTAAAATTGGTCGCAAACGACCTGCCTTTCTGAATCa < 7:189847/149‑1 (MQ=255) tACACTTGGCGTCAGGAAGCGTCGGCACGACAACCGTTCCATCAAGGGCCCACCTATGACCACAATACCGAGCAAGGGGAATGATAAGCAGGCCTCTGATGCCTGCGACCGTAAAATTGGTCGCAAACGACCTGCCTTTCTGAATCAg < 4:228492/148‑1 (MQ=255) acTTGGCGTCAGGAAGCGTCGGCACGACAACCGTTCCATCAAGGGCCCACCTATGACCACAATACCGAGCAAGGGGAATGATAAGCAGGCCTCTGATGCCTGCGACCGTAAAATTGGTCGCAAACGACCTGCCTTTCTGAATCAGGaca > 7:15167/1‑149 (MQ=255) tGGCGTCAGGAAGCGTCGGCACGACAACCGTTCCATCAAGGGCCCACCTATGACCACAATACCGCGCAAGGGGAATGATAAGCAGGCCTCTGATGCCTGCGACCGTAAAATTGGTCGCAAACGACCTGCCTTTCTGAATCAGGACACGc > 2:186399/1‑149 (MQ=255) gTCAGGAAGCGTCGGCACGACAACCGTTCCATCAAGGGCCCACCTATGACCACAATACCGAGCAAGGGGAATGATAAGCAGGCCTCTGATGCCTGCGACCGTAAAATTGGTCGCAAACGACCTGCCTTTCTGAATCAGGACACGCTTGa < 8:66525/149‑1 (MQ=255) aaGCGTCGGCACGACAACCGTTCCATCAAGGGCCCACCTATGACCACAATACCGAGCAAGGGGAATGATAAGCAGGCCTCTGATGCCTGCGACCGTAAAATTGGTCGCAAACGACCTGCCTTTCTGAATCAGGACACGc < 6:167912/139‑1 (MQ=255) aaGCGTCGGCACGACAACCGTTCCATCAAGGGCCCACCTATGACCACAATACCGAGCAAGGGGAATGATAAGCAGGCCTCTGATGCCTGCGACCGTAAAATTGGTCGCAAACGACCTGCCTTTCTGAATCAGGACACGc > 5:167912/1‑139 (MQ=255) gCACGACAACCGTTCCATCAAGGGCCCACCTATGACCACAATACCGAGCAAGGGGAATGATAAGCAGGCCTCTGATGCCTGCGACCGTAAAATTGGTCGCAAACGACCTGCCTTTCTGAATCAGGACACGCTTGACCGCATTGCCCAt > 2:51478/1‑148 (MQ=255) cACGACAACCGTTCCATCAAGGGCCCACCTATGACCACAATACCGAGCAAGGGGAATGATAAGCAGGCCTCTGATGCCTGCGACCGTAAAATTGGTCGCAAACGACCTGCCTTTCTGAATCAGGACACGCTTGACCGCATTGCCCATg > 1:179067/1‑148 (MQ=255) gTTCCATCAAGGGCCCACCTATGACCACAATACCGAGCAAGGGGAATGATAAGCAGGCCTCTGATGCCTGCGACCGTAAAATTGGTCGCAAACGACCTGCCTTTCTGAATCAGGACACGCTTGACCGCATTGCCCATGAACATGCGAAt < 1:51478/149‑1 (MQ=255) gTTCCATCAAGGGCCCACCTATGACCACAATACCGAGCAAGGGGAATGATAAGAAGGCCTCTGATGCCTGCGACCGTAAAATTGGTCGCAAACGACCTGCATTTCTGAATCAGGACACGCTTGACCGCATTGCCCATGAACATGCGGAt > 3:136407/1‑149 (MQ=255) ttCCATCAAGGGCCCACCTATGACCACAATACCGAGCAAGGGGAATGATAAGCAGGCCTCTGATGCCTGCGACCGTAAAATTGGTCGCAAACGACCTGCCTTTCTGAATCAGGACACGCTTGACCGCATTGCCCATGAACATGCGGAt > 4:260551/1‑148 (MQ=255) gCCCACCTATGACCACAATACCGAGCAAGGGGAATGATAAGCAGGCCTCTGATGCCTGCGACCGTAAAATTGGTCGCAAACGACCTGCCTTTCTGAATCAGGACACGCTTGACCGCATTGCCCATGAACATGCGGATGAACTAAagcag > 2:77184/1‑149 (MQ=255) ccACCTATGACCACAATACAGAGCAAGGGGAATGATAAGCAGGCCTCTGATGCCTGCGACCGTAAAATTGGTCGCAAACGACCTGCCTTTCTGAATCAGGACACGCTTGACCGCATTGCCCATGAACATGCGGAAGAACTAAAGCAGCt > 5:116626/1‑149 (MQ=255) aCCACAATACCGAGCAAGGGGAATGATAAGCAGGCCTCTGATGCCTGCGACCGTAAAATTGGTCGCAAACGACCTGCCTTTCTGAATCAGGACACGCTTGACCGCATTGCCCATGAACATGCGGATGAACTAAAGCAGCTGGGt < 8:250964/144‑1 (MQ=255) aCCACAATACCGAGCAAGGGGAATGATAAGCAGGCCTCTGATGCCTGCGACCGTAAAATTGGTCGCAAACGACCTGCCTTTCTGAATCAGGACACGCTTGACCGCATTGCCCATGAACATGCGGATGAACTAAAGCAGCTGGGt > 7:250964/1‑144 (MQ=255) aCCACAATACCGAGCAAGGGGAATGATAAGCAGGCCTCTGATGCCTGCGACCGTAAAATTGGTCGCAAACGACCTGCCTTTCTGAATCAGGACACGCTTGACCGCATTGCCCATGAACATGCGGATGAACTAAAGCAGCTGGGTTcgc < 4:64749/148‑1 (MQ=255) tACCGAGCAAGGGGAATGATAAGCAGGCCTCTGATGCCTGCGACCGTAAAATTGGTCGCAAACGACCTGCCTTTCTGAATCAGGACACGCTTGACCGCATTGCCCATGAACATGCGGATGAACTAAAGCAGCTGGGTTCGCGCCAGGa > 3:139777/1‑148 (MQ=255) ccGAGCAAGGGGAATGATAAGCAGGCCTCTGATGCCTGCGACCGTAAAATTGGTCGCAAACGACCTGCCTTTCTGAATCAGGACACGCTTGACCGCATTGCCCATGAACATGCGGATGAACTAAAGCAGCTGGGTTCGCGCCAGGaaaa < 8:15167/149‑1 (MQ=255) cGAGCAAGGGGAATGATAAGCAGGGCTCTGATGCGTGCGACCGTAAAATTGGTCGCAAACGACCTGCCTTTCTGAATCAGGACACGCTTGACCGCATTGCCCATGAACATGCGGATGAACTAAAGCAGCTGGGTTCGCGCCAGGAAAAg < 6:116626/149‑1 (MQ=255) cGAGCAAGGGGAATGATAAGCAGGCCTCTGATGCCTGCGACCGTAAAATTGGTCGCAAACGACCTGCCTTTCTGAATCAGGACACGCTTGACCGCATTGCCCATGAACATGCGGATGAACTAAAGCAGCTGGGTTCGCGCCAGGAAAAg > 6:270910/1‑149 (MQ=255) gCAAGGGGAATGATAAGCAGGCCTCTGATGCCTGCGACCGTAAAATTGGTCGCAAACGACCTGCCTTTCTGAATCAGGACACGCTTGACCGCATTGCCCATGAACATGCGGATGaa > 2:204676/1‑116 (MQ=255) gCAAGGGGAATGATAAGCAGGCCTCTGATGCCTGCGACCGTAAAATTGGTCGCAAACGACCTGCCTTTCTGAATCAGGACACGCTTGACCGCATTGCCCATGAACATGCGGATGAACTAAAGCAGCTGGGTTCGCGCCAGGAAAAGCGt > 5:163414/1‑149 (MQ=255) tGATAAGCAGGCCTCTGATGCCTGCGACCGTAAAATTGGTCGCAAACGACCTGCCTTTCTGAATCAGGACACGCTTGACCGCATTGCCCATGAACATGCGGATGAACTAAAGCAGCTGGGTTCGCGCCAGGAAAAGCGTTGAAGTGACg > 2:60705/1‑149 (MQ=255) tGATAAGCAGGCCTCTGATGCCTGCGACCGTAAAATTGGTCGCAAACGACCTGCCTTTCTGAATCAGGACACGCTTGACCGCATTGCCCATGAACATGCGGATGAACTAAAGCAGCTGGGTTCGCGCCAGGAAAAGCGTTGAAGTGACg > 6:204822/1‑149 (MQ=255) gATAAGCAGGCCTCTGATGCCTGCGACCGTAAAATTGGTCGCAAACGACCTGCCTTTCTGAATCAGGACACGCTTGACCGCATTGCCCATGAAGATGCGGATGAACTAAAGCAGCTGGGTTCGCGCCTGGAAAAGCGTTGAAGTGACGt > 8:105225/1‑149 (MQ=255) gATAAGCAGGCCTCTGATGCCTGCGACCGTAAAATTGGTCGCAAACGACCTGCCATTCTGAATCAGGACACGCTTGACCGCATTGCCCATGAACATGCGGATGAACTAAAGCAGCTCGGTTCGCGCCAGGAAAAGCGTTGAAGTGACGt > 1:206936/1‑149 (MQ=255) tAAGCAGGCCTCTGATGCCTGCGACCGTAAAATTGGTCGCAAACGACCTGCCTTTCTGAATCAGGACACGCTTGACCGCATTGCCCATGAACATGCGGATGAACTAAAGCAGCTGGGTTCGCGCCAGGAAAAGCGtt < 7:100372/137‑1 (MQ=255) tAAGCAGGCCTCTGATGCCTGCGACCGTAAAATTGGTCGCAAACGACCTGCCTTTCTGAATCAGGACACGCTTGACCGCATTGCCCATGAACATGCGGATGAACTAAAGCAGCTGGGTTCGCGCCAGGAAAAGCGtt > 8:100372/1‑137 (MQ=255) tAAGCAGGCCTCTGATGCCTGCGACCGTAAAATTGGTCGCAAACGACCTGCCTTTCTGAATCAGGACACGCTTGACCGCATTGCCCATGAACATGCGGATGAACTAAAGCAGCTGGGTTCGCGCCAGGAAAAGCGtt > 2:89614/1‑137 (MQ=255) tAAGCAGGCCTCTGATGCCTGCGACCGTAAAATTGGTCGCAAACGACCTGCCTTTCTGAATCAGGACACGCTTGACCGCATTGCCCATGAACATGCGGATGAACTAAAGCAGCTGGGTTCGCGCCAGGAAAAGCGtt < 1:89614/137‑1 (MQ=255) aGCAGGCCTCTGATGCCTGCGACCGTAAAATTGGTCGCAAACGACCTGCCTTTCTGAATCAGGACACGCTTGACCGCATTGCCCATGAACATGTGGATGAACTAAAGCAGCTGGGTTCGCGCCAGGAAAAGCGTTGAAGTGACGTtgct < 1:209928/149‑1 (MQ=255) aGCAGGCCTCTGATGCCTGCGACCGTAAAATTGGTCGCAAACGACCTGCCTTTCTGAATCAGGACACGCTTGACCGCATTGCCCATGAACATGCGGATGAACTAAAGCAGCTGGGTTCGCGCCAGGAAAAGCGTTGAAGTGACGTtgc < 4:139777/148‑1 (MQ=255) gCAGGCCTCTGATGCCTGCGACCGTAAAATTGGTCGCAAACGACCTGCCTTTCTGAATCAGGACACGCTTGACCGCATTGCCCATGAACATGCGGATGAACTAAAGCAGCTGGGTTCGCGCCAGGAAAAGCGTTGAAGTGACGTtgctg > 6:133847/1‑149 (MQ=255) aGGCATCAGAGGCCTGCGACCGTAAAATTGGTCGCAAACGACCTGCCTTTCTGAATCAGGACACGCTTGACCGCATTGCCCATGAACATGCGGATGAAc < 2:106740/99‑1 (MQ=255) aGGCATCAGAGGCCTGCGACCGTAAAATTGGTCGCAAACGACCTGCCTTTCTGAATCAGGACACGCTTGACCGCATTGCCCATGAACATGCGGATGAAc > 1:106740/1‑99 (MQ=255) aGGCATCAGAGGCCTGCGACCGTAAAATTGGTCGCAAACGACCTGCCTTTCTGAATCAGGACACGCTTGACCGCATTGCCCATGAACATGCGGATGAACTAAAGCAGCTGGGTTCGCGCCAGGAAAAGCGTTGaa < 6:35200/135‑1 (MQ=255) aGGCATCAGAGGCCTGCGACCGTAAAATTGGTCGCAAACGACCTGCCTTTCTGAATCAGGACACGCTTGACCGCATTGCCCATGAACATGCGGATGAACTAAAGCAGCTGGGTTCGCGCCAGGAAAAGCGTTGaa > 5:35200/1‑135 (MQ=255) ggCCTCTGATGCCTGCGACCGTAAAATTGGTCGCAAACGACCTGCCTTTCTGAATCAGGACACGCTTGACCGCATTGCCCATGAACATGCGGATGAACTAAAGCAGCTGGGTTCGCGCCAGGAAAAGCGTTGAAGTGACGTTGCTGccc < 6:163414/149‑1 (MQ=255) ctGATGCCTGCGACCGTAAAATTGGTCGCAAACGACCTGCCTTTCTGAATCAGGACACGCTTGACCGCATTGCCCATGAACATGCGGATGAACTAAAGCAGCTGGGTTCGCGCCAGGAAAAGCGTTGaa > 4:13161/1‑129 (MQ=255) ctGATGCCTGCGACCGTAAAATTGGTCGCAAACGACCTGCCTTTCTGAATCAGGACACGCTTGACCGCATTGCCCATGAACATGCGGATGAACTAAAGCAGCTGGGTTCGCGCCAGGAAAAGCGTTGaa < 3:13161/129‑1 (MQ=255) | CGCTTGCCTTTCGGAGTATCCATCAACTTCCACCGAGTCATCTCAGATACACTTGGCGTCAGGAAGCGTCGGCACGACAACCGTTCCATCAAGGGCCCACCTATGACCACAATACCGAGCAAGGGGAATGATAAGCAGGCCTCTGATGCCTGCGACCGTAAAATTGGTCGCAAACGACCTGCCTTTCTGAATCAGGACACGCTTGACCGCATTGCCCATGAACATGCGGATGAACTAAAGCAGCTGGGTTCGCGCCAGGAAAAGCGTTGAAGTGACGTTGCTGCCC > NC_002947/5047122‑5047407 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |