New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4647595 | 17 (0.530) | 3 (0.130) | 3/212 | 3.6 | 20.4% | intergenic (+48/+83) | fusB/PP_4112 | elongation factor G 2/sulfate transporter |
? | NC_002947 | = 4647625 | 11 (0.470) | intergenic (+78/+53) | fusB/PP_4112 | elongation factor G 2/sulfate transporter | |||||
Rejected: Coverage evenness skew score above cutoff. |
GTTCACCCGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTGGCATAGCGCTCGC > NC_002947/4647478‑4647772 | gTTCACCCGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGcccc > 1:124705/1‑148 (MQ=255) gCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTTAACCCGCTCCTAAAGGGTGGCCGCAGGCCCACACCTTGTGCGCCCCCCGGtt > 5:72129/1‑145 (MQ=38) gCCGAGGCCCGGGCGAGGATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCgg < 6:155594/148‑1 (MQ=255) gCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGc < 2:158140/146‑1 (MQ=255) cGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGt < 2:124705/148‑1 (MQ=255) gAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGtt < 2:76416/148‑1 (MQ=255) gCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTAc < 6:154230/148‑1 (MQ=255) gtgTAAGCGGTAGTCCTTTGCCGGCCTCTTCGGGGGTAAACCCGCTCCTACAGGAGGGCCGCCGGCCCAAACTTTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTc < 6:72129/146‑1 (MQ=37) cGGCTTCTTCCCGTGAAAACCCGCGCCTACCGGAGGCCCGCAGGCCCAACATTTGTGCGCCCCCCTGTAGGAGCGGTTTAACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGctt < 2:20906/148‑1 (MQ=37) ctctTCGCGGTTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGGGGTTTTACGCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTg < 6:32927/148‑1 (MQ=255) tctTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCACACATTGTGCGCCCCCCTGTAGGAGCGGGTTTTCCCGCGAAGAGGCCGGCACAGACCGGAACAGTTTTCCATGCTGCTCGCCCGCCCGCGTCAACAGCTTCTTGc > 5:84322/1‑148 (MQ=39) gcgGGTAACCCCGCGCCTACAGTAGGCCCGCAGGCCCAAACATTGTCCGCCCCCCTGTCGGAGCGGTTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCAc < 3:37720/145‑1 (MQ=38) gTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCACCAGCTTCTTGCACCGCTCCg > 5:38002/1‑148 (MQ=255) gATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACgcgc > 4:45845/1‑147 (MQ=255) gCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCtt > 7:127334/1‑148 (MQ=255) aaCATGGGGCGCCCCCTTTTCGTAGGGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCTCAAATGCTTGCCCGCCtt < 4:138612/148‑1 (MQ=255) aCATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCGTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTg > 6:3756/1‑148 (MQ=255) cccTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGCCCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTGGCATAGCGCTcgc > 7:110076/1‑148 (MQ=255) | GTTCACCCGCTATGCCGAGGCCCCGGCGAGCATTGCCGATGGCATCGTCAAGAAGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTGGCATAGCGCTCGC > NC_002947/4647478‑4647772 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |