Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_002947 1,419,549 +C intergenic (‑38/+98) PP_1242 ← / ← PP_1244 hypothetical protein/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,419,5481.C100.0% 119.5 / NA 35intergenic (‑37/+99)PP_1242/PP_1244hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base C (10/25);  total (10/25)

CTGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTG‑‑TGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑CTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAG  >  NC_002947/1419401‑1419656
                                                                                                                                                      |                                                                                                            
cTGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTG‑‑TGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGggctgg‑c                                                                                                             <  5:186251/149‑1 (MQ=255)
cTGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTG‑‑TGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGggctgg‑c                                                                                                             <  1:231271/149‑1 (MQ=255)
      ggggATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTG‑‑TGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTc                                                                                                        <  1:136918/149‑1 (MQ=255)
          aTGCCGTGGTCGATGCGGTACAGCTGGTGAGTGTTGTTTTCGCCTTGGGAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGCATGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTcgc                                                                                                      <  1:132575/149‑1 (MQ=255)
          aTGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTG‑‑TGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCgg                                                                                                    <  5:327916/149‑1 (MQ=255)
          aTGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTAGTTTTCGCCTTGGTAGAAGCAGGTCGTGCCGTCTTTGGTGGGTTCTGTTG‑‑TGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCgg                                                                                                    <  6:117719/149‑1 (MQ=255)
           tGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTG‑‑TGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGAGCTGGCCTCTTCGCggg                                                                                                   >  6:56675/1‑149 (MQ=255)
              cGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTG‑‑TGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCAc                                                                                                <  7:251722/149‑1 (MQ=255)
                     gATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCATGTCTTGCCGACTGTGGTGGGTTCTGTTG‑‑TGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCt                                                                                         <  6:401841/149‑1 (MQ=255)
                      aTGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTG‑‑TGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTc                                                                                        >  2:58966/1‑149 (MQ=255)
                           gAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTG‑‑TGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCcaca                                                                                   <  7:252951/149‑1 (MQ=255)
                             aCAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTG‑‑TGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAgg                                                                                 <  7:40728/149‑1 (MQ=255)
                                 cGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTG‑‑TGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAgggtca                                                                             >  2:104017/1‑145 (MQ=255)
                                    gTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTG‑‑TGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACtgtg                                                                          <  8:7128/149‑1 (MQ=255)
                                      gAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTG‑‑TGTTGCCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTGGCCTGGGCTGGCCTCTTCGCCGGCACGCCCGCTCCCACAGGTACTGTGCa                                                                        <  8:125007/149‑1 (MQ=39)
                                           ttgttTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTG‑‑TGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGc                                                                    <  4:154788/148‑1 (MQ=255)
                                             gttTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTG‑‑TGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGt                                                                  >  2:130685/1‑148 (MQ=255)
                                                 tctccTTGGTAGAAGCAGGTCTTGCCGACTGTTGTGGGTTCTGTTG‑‑TGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATGCTGGGTTGCCTGGGCTGGCCTCTTcgc                                                                                                      <  6:85462/105‑1 (MQ=255)
                                                 tCGGCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTATGTTG‑‑TGTTGTCGGTGGTCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTcgc                                                                                                      >  5:85462/1‑108 (MQ=255)
                                                 tCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTG‑‑TGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACg                                                              <  5:270316/148‑1 (MQ=255)
                                                    ccTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTG‑‑TGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCtg                                                          >  4:359302/1‑149 (MQ=255)
                                                            gAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTG‑‑TGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGAcc                                                  <  5:182364/149‑1 (MQ=255)
                                                                  ggTCTTGCCGACTGTGGTGGGTTCTGTTG‑‑TGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTgg                                            <  1:130685/149‑1 (MQ=255)
                                                                    tCTTGCCGACTGTGGTGGGTTCTGTTG‑‑TGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTgg                                            >  3:155955/1‑147 (MQ=255)
                                                                         ccGACTGTGGTGGGTTCTGTTG‑‑TGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGa                                                                >  4:199311/1‑122 (MQ=255)
                                                                         ccGACTGTGGTGGGTTCTGTTG‑‑TGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGa                                                                <  3:199311/122‑1 (MQ=255)
                                                                         ccGACTGTGGTGGGTTCTGTTG‑‑TGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCgg                                      <  4:155955/148‑1 (MQ=255)
                                                                          cGACTGTGGTGGGTTCTGTTG‑‑TGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGc                                    <  3:359302/149‑1 (MQ=255)
                                                                          cGACTGTGGTGGGTTCTGTTG‑‑TGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGc                                    <  3:212691/149‑1 (MQ=255)
                                                                          cGACTGTGGTGGGTTCTGTTG‑‑TGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGc                                    <  2:459694/149‑1 (MQ=255)
                                                                          cGACTGTGGTGGGTTCTGTTG‑‑TGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGCGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGc                                    <  5:56675/149‑1 (MQ=255)
                                                                            aCTGTGGTGGGTTCTGTTG‑‑TGTTGTCGGTGGGCATTGTGTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGt                                  <  7:96820/149‑1 (MQ=255)
                                                                                  gtggGTTCTGTTG‑‑TGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCcgc                            <  4:323588/149‑1 (MQ=255)
                                                                                  gtggGTTCTGTTG‑‑TGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCcgc                            <  1:58966/149‑1 (MQ=255)
                                                                                           gttg‑‑tgttgtCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCACCCACAGGTTCTGTGCAGTGCGGGACGGCTGTGGTGCCCCGGGGGGAGCGGGCGTGCCCGCGaa                         >  2:119443/1‑143 (MQ=38)
                                                                                           gttg‑‑tgttgtCGGGGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGGGGTGACCCTGTGGGAGCGGGCGTGCCCGCGaa                         <  1:119443/143‑1 (MQ=255)
                                                                                                              cATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCGGACCTGCTAATGCAAg  >  3:91473/1‑149 (MQ=255)
                                                                                                                                                      |                                                                                                            
CTGGCAGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTG‑‑TGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑CTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAG  >  NC_002947/1419401‑1419656

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑