Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_002947 | 2,921,460 | G→A | G3494R (GGG→AGG) | PP_2561 → | hemolysin‑type calcium‑binding bacteriocin |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,921,460 | 0 | G | A | 96.7% | 186.2 / ‑6.6 | 61 | G3494R (GGG→AGG) | PP_2561 | hemolysin‑type calcium‑binding bacteriocin |
Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (36/23); minor base C (0/2); total (36/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.64e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GCTGGGGGAGGCCGGTAACGACAACCTGAACGGGGGCGCTGGCGATGACAGCCTGGATGGCGGCAACGGCAATGACACCCTGCAGGGCGGCGATGGTAACGACACATTGTTCGGCGACGTGGGTACCGACACCCTGATCGGGGGGGCCGGCAACGACTTCCTCA‑ACGGTGCGGCAGGTAACGATACGGTGGTGGGTGGGGCCGGTAACGACACCATGATCGCCACCGATGGAAACGATGTGTTCCAGTTCGCTGCAGGCTTTGGCAACGACCTGATCATC > NC_002947/2921321‑2921600 | gCTGGGGGAGGCCGGTAACGACAACCTGAACGGGGGCGCTGGCGATGACAGCCTGGATGGCGGCAACGGCAATGACACCCTGCAGGGCGGCGATGGTAACGACACATTGTTCGGCGACGTGGGTACCGACACCCTGATCAGGGGGGcc < 3:116748/148‑1 (MQ=255) cTGGGGGAGGCCGGTAACGACAACCTGAACGGGGGCGCTGGCGATGACAGCCTGGATGGCGGCAACGGCAATGACACCCTGCAGGGCGGCGATGGTAACGACACATTGTTCGGCGCCGTGGGTACCGACACCCTGATCAGGGGGGCCgg > 4:159499/1‑149 (MQ=255) cTGGGGGAGGCCGGTAACGACAACCTGAACGGGGGCGCTGGCGATGACAGCCTGGATGGCGGCAACGGCAATCACCCCCTGCAGGGCGGCGATGGTAACGCCACATTGTTCGGCCACGTGGGTACCGACACCCTCATCAGGGGGGCCgg > 1:143976/1‑149 (MQ=255) gCCGGTAACGACAACATGAACGGGGGCGATGGCGAAGACAGCATGGATGGCGGCAACGGCAATGACACCCTGCAGGGCGGCGATGGTAACGACACATTGTTAGGCGACGTGGGTACCGACACCATGATCAGGGGGGCCGGCAGCGACtt > 8:365851/1‑149 (MQ=255) gCCGGTAACGACAACAAGAAAGAGCGACCTGTAGATGAAAACATTTATGGCGGCAACTGCAATGACACCATGCAGTGAGAATATTTTAAATACACATTGTTCGTCGACGTGGGTACCGACACCCTGATCAGGGGGGCCGGCAACGACtt > 4:258226/1‑149 (MQ=255) cGGTAACGACAACCTGAACGGGGGCGCTGGCGATGACAGCCTGGATGGCGGCAACGGCAATGACACCCTGCAGGGAGGCGATGGTAACGACACATTGTTCGGCGACGTGGGTACCGACACCCTGATCAGGCGGGCCGGCAACTCCTTcc > 5:440222/1‑149 (MQ=255) cGACAACCTGAACGGGGGCGCTGGCGATGACAGCCTGGATGGCGGCAACGGCAATGACACCCTGCAGGGCGGCGATGGTAACGACACATTGTTCGGCGACGTGGGTACCGACACCCTGATCAGGGGGGCCGGCAACGACTTCCTCA‑ACg > 7:253816/1‑149 (MQ=255) gACAACCTGAACGGGGGCGCTGGCGATGACAGCCTGGATGGCGGCAACGGCAATGACACCCTGCAGGGCGGCGATGGTAACGACACATTGTTCGGCGACGTGGGTACCGACACCCTGATCAGGGGGGCCGGCAACGACTTCCTCA‑ACgg > 5:123711/1‑149 (MQ=255) gACAACCTGAACGGGGGCGCTGGCGATGACAGCCTGGATGGCGGCAACGGCAATGACACCCTGCAGGGCGGCGATGGTAACGACACATTGTTCGGCGACGTGGGTACCGACACCCTGATCAGCGGGGCCGGCAACGACTTCCTCA‑ACgg > 5:204741/1‑149 (MQ=255) gACAACCTGAACGGGGGCGCTGGCAATGACAGCCTGGATCGCGGCAACGGCAATGACACCCTGCAGGGCGGCGATGGTAACCACACATAGTTCGGCGACGTGCGTACCGACCCCCTGATCAGGGGGGCCGGCAACGACATCCTCA‑ACgg > 7:68836/1‑149 (MQ=255) aCAACCTGAACGGGGGCGCTGGCGATGACAGCCTGGATGGCGGCAACGGCAATGACACCCTGCAGGGCGGCGATGGTAACGACACATTGTTCGGCGACGTGGGTACCGACACCCTGATCAGGGGGGCCGGCAACGACTTCCTCA‑ACGGt > 1:158953/1‑149 (MQ=255) aCAACCTGAACGGGGGCGCTGGCGATGACAGCCTGGATGGCGGCAACGGCAATGACACCCTGCAGGGCGGCGATGGTAACGACACATTGTTCGGCGACGTGGGTACCGACACCCTGATCAGGGGGGCCGGCAACGACTTCCTCA‑ACGGt > 4:215268/1‑149 (MQ=255) aCAACCTGAACGGGGGCGCTGGCGATGACAGCCTGGATGGCGGCAACGGCAATGACACCCTGCAGGGCGGCGATGGTAACGACACATTGTTCGGCGACGTGGGTACCGACACCCTGATCAGGGGGGCCGGCAACGACTTCCTCA‑ACGGt > 1:160685/1‑149 (MQ=255) cAACCTGAACGGGGGCGCTGGCGATGACAGCCTGGATGGCGGCAACGGCAATGACACCCTGCAGGGCGGCGATGGTAACGACACATTGTTCGGCGACGTGGGTACCGACACCCTGATCAGGGGGGCCGGCAACGACTTCCTCA‑ACGGTg > 3:452617/1‑149 (MQ=255) cTGAACGGGGGCGCTGGCGATGACAGCCTGGATGGCGGCAACGGCAATGACACCCTGCAGGGCGGCGATGGTAACGACACATTGTTCGGCGACGTGGGTACCGACACCCTGATCAGGGGGGCCGGCAACGACTTCCTCA‑ACGGTGCgg > 1:343238/1‑148 (MQ=255) aggaCGGGGTCGCTGGCGAGGACAGCCTTGAGGGGGGCAACGTCAATGACACCCTGCAGGGCGGCGATGGTAACGACAGATTGTTCGGCGACGTGGGTACCGACACCCTGATCAGGGGGGCCGGCAACGACTTCCTCA‑ACGGTGCGGCa < 8:382880/146‑1 (MQ=255) gAACGGGGGCGCTGGCGATGACAGCCTGGATGGCGGCAACGGCAATGACACCCTGCAGGGCGGCGATGGTAACGACACATTGTTCGGCGACGTGGGTACCGACACCCTGATCAGGGGGGCCGGCAACGACTTCCTCA‑ACGGTGCGGCAg > 2:402625/1‑149 (MQ=255) ggggCGCTGGCGATGACAGCCTGGATGGCGGCAACGGCAATGACACCCTGCAGGGCGGCGATGGTAACGACACATTGTTCGGCGACGTGGGTACCGACACCCTGATCAGGGGGGCCGGCAACGACTTCCTCA‑ACGGTGCGGCAGGTAAc < 2:158953/149‑1 (MQ=255) ggCGCTGGCGATGACAGCCTGGATGGCGGCAACGGCAATGACACCCTGCAGGGCGGCGATGGTAACGACACATTGTTCGGCGACGTGGGTACCGACACCCTGATCAGGGGGGCCGGCAACGACTTCCTCA‑ACGGTGCGGCAGGTAACGa > 5:19396/1‑149 (MQ=255) gcTGGCGATGACAGCCTGGATGGCGGCAACGGCAATGACACCCTGCAGGGCGGCGATGGTAACGACACATTGTTCGGCGACGTGGGTACCGACACCCTGATCAGGGGGGCCGGCAACGACTTCCTCA‑ACGGTGCGGCAGGTAACGATAc < 6:123711/149‑1 (MQ=255) gATGACAGCCTGGATGGCGGCAACGGCAATGACACCCTGCAGGGCGGCGATGGTAACGACACATTGTTCGGCGACGTGGGTACCGACACCCTGATCAGGGGGGCCGGCAACGACTTCCTCA‑ACGGTGCGGCAGGTAACGATACggtggt < 8:253816/149‑1 (MQ=255) gATGACAGCCTGGATGGCGGCAACGGCAATGACACCCTGCAGGGCGGCGATGGTAACGACACATTGTTCGGCGACGTGGGTACCGACACCCTGATCAGGGGGGCCGGCAACGACTTCCTCA‑ACGGTGCGGCAGGTAACGATACggtggt > 5:432574/1‑149 (MQ=255) gATGACAGCCTGGATGGCGGCAACGGCAATGACACCCTGCAGGGCGGCGATGGTAACGACACATTGTTCGGCGACGTGGGTACCGACACACTCAATAAGGAGGCCCGCAACGACTTCCTCA‑AAGGTGCGGCAGGTAACGATACggaggt > 1:381104/1‑149 (MQ=255) tGACAGCATGGCTGGCGGCATCGTCAATGACACCCTGCAGGGCGGCGATGGTAACGACACATTGTTCGGCGACGTGGGTACCGACACCCTGATCAGTGGGGCCGGGAACGACTTCCTCA‑ACGGTGCGGCAGTTAACGATACGGtggtgg < 6:440222/149‑1 (MQ=255) ggACAGCCTGGATGGCGGCAACGGCAATGACACCCTGCAGGGCGGCGATGGTAACGACACATTGTTCGGCGACGTGGGTACCGACACCCTGATCAGGGGGGCCGGCAACGACTTCCTCA‑ACGGTGCGGCAGGTAACGATACGGtggtgg < 2:143976/148‑1 (MQ=255) gcggcAACGGCAATGACACCCTGCAGGGCGGCGATGGTAACGACACATTGTTCGGCGACGTGGGTACCGACACCCTGATCAGGGGGGCCGGCAACGACTTCCTCA‑ACGGTGCGGCAGGTAACGATACGGTGGTGGGTGGGGCCGGTAAc < 2:343238/149‑1 (MQ=255) cggcaacggcaaTGACACCCTGCAGGGCGGCGATGGTAACGACACATTGTTCGGCGACGTGGGTACCGACACCCTGATCAGGGGGGCCGGCAACGACTTCCTCA‑ACGGTGCGGCAGGTAACGATACGGTGGTGGGTGGGGCCGGTAAc > 6:203942/1‑148 (MQ=255) ggcaacggcaaTGACACCCTGCAGGGCGGCGATGGTAACGACACATTGTTGGGCGACGTGGGTAACGACACCCTGATCAGGGGGGCCGGCAACGACTTCCTCA‑ACGGTGCGGCAGGTAACGATACGGTGTTGGGTGGGGCCGGTAACGa < 3:258226/149‑1 (MQ=255) caacggcaaTGACACCCTGCAGGGCGGCGATGGTAACGACACATTGTTCGGCGACGTGGGTACCGACTCCATGATCAGGGGGGCCGGCAACGACTTCCTCA‑ACGGTGCGGCAGGTAACGATACGGTGGTGGGTGGGGCCGGTAACGaca < 6:19396/149‑1 (MQ=255) cacCCTGCAGGGCGGCGATGGTAACGACACATTGTTCGGCGACGTGGGTACCGACACCCTGATCAGGGGGGCCGGCAACGACTTCCTCA‑ACGGTGCGGCAGGTAACGATACGGTGGTGGGTGGGGCCGGTAACGACACCATGATCGCCa > 1:177828/1‑149 (MQ=255) acCCTGCAGGGCGGCGATGGTAACGACACATTGTTTGGCGACGTGGGTACCGACACCCTGATCAGGGGGGCCGGCAACGACTTCCTCA‑ACGGTGCGGCAGGTAACGATACGGTGGTGGGTGGGGCCGGTAACGACACCATGATCGCCAc > 7:75337/1‑149 (MQ=255) acCCTGCAGGGCGGCGATGGTAACGACACATTGTTCGGCGACGTGGGTACCGACACCCTGATCAGGGGGGCCGGCAACGACTTCCTCA‑ACGGTGCGGCAGGTAACGATACGGTGGTGGGTGGGGCCGGTAACGACACCATGATCGCCAc > 5:169238/1‑149 (MQ=255) cAGGGCGGCGATGGTAACGACACATTGTTCGGCGACGTGGGTACCGACACCCTGATCAGGGGGGCCGTCAACGACTTCCTCA‑ACGGTGCGGCAGGTAACGATACGGTGGTGGGTGGGGCCGGTAACGACCCCATGATCGCCACCGATg > 5:328232/1‑148 (MQ=255) cAGGGCGGCGATGGTAACGACACATTGTTCGGCGACGTGGGTACCGACACCCTGATCAGGGGGGCCGGCAACGACTTCCTCA‑ACGGTGCGGCAGGTAACGATACGGTGGTGGGTGGGGCCGGTAACGACACCATGATCGCCACCGAt < 1:402625/147‑1 (MQ=255) cAGGGCGGCGATGGTAACGACACATTGTTCGGCGACGTGGGTACCGACACCCTGATCAGGGGGGCCGGCAACGACTTCCTCA‑ACGGTGCGGCAGGTAACGATACGGTGGTGGGTGGGGCCGGTAACGACACCATGATCGCCACCGATgg < 2:160685/149‑1 (MQ=255) ggcgATGGTAACGACACATTGTTCGGCGACGTGGGTACCGACACCCTGATCAGGGGGGCCGGCAACGACTTCCTCA‑ACGGTGCGGCAGGTaa < 6:17376/92‑1 (MQ=255) ggTAACGACACATTGTTCGGCGACGTGGGTACCGACACCCTGATCAGGGGGGCCGGCAACGACTTCCTCA‑ACGGTGCGGCAGGTAACGATACGGTGGTGGGTGGGGCCGGTAACGACACCATGATCGCCACCGATGGAAACGATGTGtt > 7:334600/1‑149 (MQ=255) gTAACGACACATTGTTCTGCGACGTGGGTACCGACACCCTGATCAGGGGGGCCGGCAACGACTTCCTCA‑ACGGTGCGGCAGGTAACGATACGGTGGTGGGTGGGGCCGGTAACGACACCATGATCGCCACCGATGGAAACGATGTGTTc < 6:169489/149‑1 (MQ=255) tAACGACACATTGTTCGGCGACGTGGGTACCGACACCCTGATCAGGGGGGCCGGCAACGACTTCCTCA‑ACGGTGCGGCAGGTAACGATACGGTGGTGGGTGGGGCCGGTAACGACACCATGATCGCCACCGATGGAAACGATGTGTTc > 1:369153/1‑148 (MQ=255) aaCGACACATTGTTCGGCGACGTGGGTACCGACACCCTGATCAGGGGGGCCGGCAACGACTTCCTCA‑ACGGTGCGGCAGGTAACGATACGGTGGTGGGTGGGGCCGGTAACGACACCATGATCGCCACCGATGGAAACGATGTGTTCCa > 5:326746/1‑149 (MQ=255) aCGACACATTGTTCGGCGACGTGGGTACCGACACCCTGATCAGGGGGGCCGGCAACGACTTCCTCA‑ACGGTGCGGCAGGTAACGATACGGTGGTGGGTGGGGCCGGTAACGACACCATGATCGCCACCGATGGAAACGATGTGTTCCa < 4:452617/148‑1 (MQ=255) acacATTGTTCGGCGACGTGGGTACCGACACCCTGAACAGGGGGGCCGGCAACGACTTACTCA‑ACGGTGCGGCAGGAAACGATACGGTGGGGGGTGGGGCCGGTAACGACACCATGATCGCCACCGATGGAAACGATGTGTTCCAGTTc < 7:365851/149‑1 (MQ=255) aTTGTTCGGCGACGTGGGTACCGACACCCTGATCAGGGGGGCCGGCAACGACTTCCTCA‑ACGGTGCGGCAGGTAACGATACGGTGGTGGGTGGGGCCGGTAACGACACCATGATCGCCACCGATGGAAACGATGTGTTCCAGTTCGCTg > 5:158224/1‑149 (MQ=255) aTTGTTCGGCGACGTGGGTACCGACACCCTGATCAGGGGGGCCGGCAACGACTTCCTCA‑ACGGTGCGGCAGGTAACGATACGGTGGTGGGTGGGGCCGGTAACGACACCATGATCGCCACCGATGGAAACGATGTGTTCCAGTTCGCTg < 3:215268/149‑1 (MQ=255) aTTGTTCGGCGACGACGGTACCGACACCCTGATCAGGGGGGCCGGCAACGACTTCCTCA‑ACGGTGCGGCAGGTAACGATACGGTGGTGGGTGGGGCCGGTAACGACACCATGATCGCCACCGATGGAAACGATGTGTTCCAGTTCGCTg > 4:2413/1‑149 (MQ=255) gTTCGGCGACGTGGGTACCGACACCCTGATCAGGGGGGCCGGCAACGACTTCCTCA‑ACGGTGCGGCAGGTAACGATACGGTGGTGGGTGGGGCCGGTAACGACACCATGATCGCCACCGATGGAAACGATGTGTTCCAGTTCGCTGCAg > 5:182134/1‑149 (MQ=255) ttCGGAGACGTGTTTACCTACACGATGATCATGGGTTCCGTGAACGACATCCTCT‑AGGGCGCGGCCGGAAACGATACGGTGGTGGGGGTGGGCTGTAACGACACCATGATCGCCACCGATGGAAACGATGTGTTCCAGTTCGCTGCAgg < 6:121574/149‑1 (MQ=255) cGGCGACGTGGGTACCGACACCCTGATCAGGGGGGCCGGCAACGACTTCCTCA‑ACGGTGCGGCAGGTAACGATACGGTGGTGGGTGGGGCCGGTAACGACACCATGATCGCCACCGATGGAAACGATGTGTTCCAGTTCGCTGCAGGCt > 7:15536/1‑149 (MQ=255) ggCGACGTGGGTACCGACACCCTGATCAGGGGGGCCGGCAACGACTTCCTCA‑ACGGTGCGGCAGGTAACGATACGGTGGTGGGTGGGGCCGGTAACGACACCATGATCGCCACCGATGGAAACGATGTGTTCCAGTTCGCTGCAGGCtt < 6:432574/149‑1 (MQ=255) gCGACGTGGGTACCGACACCCTGATCAGGGGGGCCGGCAACGACTTCCTCA‑ACGGTGCGGCAGGTAACGATACGGTGGTGGGTGGGGCCGGTAACGACACCATGATCGCCACCGATGGAAACGATGTGTTCCAGTTCg < 5:328500/138‑1 (MQ=255) gCGACGTGGGTACCGACACCCTGATCAGGGGGGCCGGCAACGACTTCCTCA‑ACGGTGCGGCAGGTAACGATACGGTGGTGGGTGGGGCCGGTAACGACACCATGATCGCCACCGATGGAAACGATGTGTTCCAGTTCg > 6:328500/1‑138 (MQ=255) ggTACCGACACCCTGATCAGGGGGGCCGGCAACGACTTCCTCAGACGGTGCGGCAGGTACCGATACGGTGGTGGGTGGGGCCGGTAACGACACCATGATCGCCCCCGATGGAAACGAGTTGTTCCAGTTCGATGAAGGCTTTGGAAACg > 1:89152/1‑149 (MQ=255) gTACCGACACCCTGATCAGGGGGGCCGGCAACGACTTCCTCA‑ACGGTGCGGCAGGTAACGATACGGTGGTGGGTGGGGCCGGTAACGACACCATGATCGCCACCGATGGAAACGATGTGTTCCAGTTCGCTGCAGGCTTTGGCAACGAc < 3:214175/149‑1 (MQ=255) ccGACCCCCTGCTCCGGGGGGCCGGCAACGACTGCCTCA‑ACGGTGCTGCAGGTAACGATACGGTGGTGGGGGGGGCCGGTAACGACACCATGATCGCCACCGATGGAAACGATGTGTTCCAGTTCGCTGCAGGCTTTGGCAACGACCTg < 5:453158/149‑1 (MQ=255) gACACCCTGATCAGGGGGGCCGGCAACGACTTCCTCA‑ACGGTGCGGCAGGTAACGATACGGTGGTGGGTGGGGCCGGTAACGACACCATGATCGCCACCGATGGAAACGATGTGTTCCAGTTCGCTGCAGGCTTTGGCAACGACCTGat > 6:282635/1‑149 (MQ=255) acccccTGAGCCGGGGGGCCGGCAACGACTTCCTCA‑ACGGTGCGGCAGGTAACGATACGGTGGTGGGTGTGGCCGGTAACGACACCATGATCGCCACCGATGGAAACGATGTGTTCCAGTTCGCTGCAGGCTTTGGCAACGACCTGatc < 6:253702/146‑1 (MQ=255) acCCTGATCAGGGGGGCCGGCAACGACTTCCTCA‑ACGGTGCGGCAGGTAACGATACGGTGGTGGGTGGGGCCGGTAACGCCACAATGATCGCCACCGATGGAACGGATGTGTTCCATTTCGCTGCAGCCTATGGAAACGACCTGatca > 6:267052/1‑148 (MQ=255) acCCTGATCAGGGGGGCCGGCAACGACTTCCTCA‑ACGGTGCGGCAGGTAACGATACGGTGGTGGGTGGGGCCGGTAACGACACCATGATCGCCACCGATGGAAACGATGTGTTCCAGTTCGCTGCAGGCTTTGGCAACGACCTGatcat < 6:182134/149‑1 (MQ=255) ccTGATCAGGGGGGCCGGCAACGACTTCCTCA‑ACGGTGCGGCAGGTAACGATACGGTGGTGGGTGGGGCCGGTAACGACACCATGATCGCCACCGATGGAAACGATGTGTTCCAGTTCGCTGCAGGCTTTGGCAACGACCTGatcatc > 1:239583/1‑148 (MQ=255) aTCAGGGGGGCCGGCAACGACTTCCTCA‑ACGGTGCGGCAGGTAACGATACGGTGGTGGGTGGGGCCGGTAACGACACCATGATCGCCACCGAt < 7:335493/93‑1 (MQ=255) aTCAGGGGGGCCGGCAACGACTTCCTCA‑ACGGTGCGGCAGGTAACGATACGGTGGTGGGTGGGGCCGGTAACGACACCATGATCGCCACCGAt > 8:335493/1‑93 (MQ=255) | GCTGGGGGAGGCCGGTAACGACAACCTGAACGGGGGCGCTGGCGATGACAGCCTGGATGGCGGCAACGGCAATGACACCCTGCAGGGCGGCGATGGTAACGACACATTGTTCGGCGACGTGGGTACCGACACCCTGATCGGGGGGGCCGGCAACGACTTCCTCA‑ACGGTGCGGCAGGTAACGATACGGTGGTGGGTGGGGCCGGTAACGACACCATGATCGCCACCGATGGAAACGATGTGTTCCAGTTCGCTGCAGGCTTTGGCAACGACCTGATCATC > NC_002947/2921321‑2921600 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |