Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,336,743 | Δ1 bp | 10.5% | coding (193/1443 nt) | PP_4696 → | nitrogen regulation protein NR(I) |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,336,743 | 0 | A | . | 10.5% | 112.6 / 6.6 | 38 | coding (193/1443 nt) | PP_4696 | nitrogen regulation protein NR(I) |
Reads supporting (aligned to +/- strand): ref base A (16/18); new base . (2/2); total (18/20) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GCCCTGCGTCGCCTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCACGACGAGATGCTGCAGGCAGTAGCGCGTATTCTGC > NC_002947/5336596‑5336890 | gCCCTGCGTCGCCTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCaa < 3:168408/149‑1 (MQ=255) cTGCGTCGCCTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCt > 6:309950/1‑149 (MQ=255) cagggccgAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCCAgg < 1:205385/142‑1 (MQ=255) ggAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCACCCCGGTg < 6:56205/149‑1 (MQ=255) ccAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCACCCCGGTGCTGa > 3:265160/1‑149 (MQ=255) cAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCCa > 2:269855/1‑125 (MQ=255) gTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCGCCGAGCTTGATC‑AGCTCggtgccg > 1:199424/1‑119 (MQ=255) gTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCGCCGAGCTTGATC‑AGCTCggtgccg < 2:199424/124‑6 (MQ=255) tGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCa < 2:272794/149‑1 (MQ=255) gAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCt > 4:229359/1‑92 (MQ=255) gAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCt < 3:229359/92‑1 (MQ=255) aaGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTg < 3:276870/149‑1 (MQ=255) ccAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACt < 5:309950/149‑1 (MQ=255) ttCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAAt > 8:121412/1‑149 (MQ=255) cATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGgcg < 4:265160/149‑1 (MQ=255) cACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTg > 2:82552/1‑148 (MQ=255) tCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCAGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTa > 8:122717/1‑148 (MQ=255) gACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACa < 1:5817/148‑1 (MQ=255) aTCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCaa < 7:121412/149‑1 (MQ=255) cAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCGCCGCGGTGCTGATc > 7:111608/1‑73 (MQ=255) cAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCGCCCCGGTGCTGATc < 8:111608/73‑1 (MQ=255) aGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCAAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCtt > 2:14246/1‑149 (MQ=255) cGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGc < 2:240737/88‑1 (MQ=255) cGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGc > 1:240737/1‑88 (MQ=255) cGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGa > 8:119614/1‑110 (MQ=255) cGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGa < 7:119614/110‑1 (MQ=255) cGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCg > 3:187820/1‑149 (MQ=255) cgcCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCacg < 1:271928/148‑1 (MQ=255) cccGGCGCGCCAGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCACGACGAGAt < 7:122717/149‑1 (MQ=255) ggCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCACGACGAGAtgct < 1:14246/149‑1 (MQ=255) ccGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTc > 2:203512/1‑125 (MQ=255) ccGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTc < 1:203512/125‑1 (MQ=255) cctggccGAGCTTGATC‑AGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCACGACGAGATGCTgcaggc > 2:286522/6‑147 (MQ=255) cctggccGAGCTTGATC‑AGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCACGACGAGATGCTgcaggc < 1:286522/142‑1 (MQ=255) cACCGAGC‑TGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCACGACgaga < 4:58117/134‑1 (MQ=255) cACCGAGC‑TGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCACGACgaga > 3:58117/1‑134 (MQ=255) tGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCACGACGAGATGCTGCAGGCAGTAGCGCGTAt > 4:57141/1‑148 (MQ=255) aTCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCACGACGAGATGCTGCAGGCAGTa > 1:316357/1‑138 (MQ=255) aTCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCACGACGAGATGCTGCAGGCAGTa < 2:316357/138‑1 (MQ=255) aaGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACACCGCCAAGCCCTTCGACCACGACGAGATGCTGCAGGCAGTAGCGCGTATTCTGc < 1:82552/148‑1 (MQ=255) | GCCCTGCGTCGCCTGCTTGAGCGGAACCAGTACCAGGTCAGCGAGGCCGGCTCGGTGCAGGAAGCCCAGGAACGCTTCAGCATTGCCACTTTCGACCTCATCGTCAGCGACCTGCGCCTGCCCGGCGCGCCCGGCACCGAGC‑TGATCAAGCTCGGCCAGGGCACCCCGGTGCTGATCATGACCAGTTACGCCAGCCTGCGCTCAGCGGTGGACTCGATGAAAATGGGCGCGGTGGACTACATCGCCAAGCCCTTCGACCACGACGAGATGCTGCAGGCAGTAGCGCGTATTCTGC > NC_002947/5336596‑5336890 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |