Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 6,053,544 | Δ1 bp | 6.3% | intergenic (‑78/‑113) | PP_5305 ← / → exbB | epimerase/dehydratase‑like protein/biopolymer transport protein ExbB |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 6,053,544 | 0 | C | . | 6.3% | 192.2 / 7.4 | 63 | intergenic (‑78/‑113) | PP_5305/exbB | epimerase/dehydratase‑like protein/biopolymer transport protein ExbB |
Reads supporting (aligned to +/- strand): ref base C (29/29); new base . (2/2); total (32/31) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.75e-01 |
CCAACATCTGCTTGGCCAGACGCCCACCCACATCACCACAACCCACCACCATCACGGAAAGGTCTGACATCTCTAAACTCCCTAGACCAATTGATCAGCTTGGCCACGCTACACGATGGGCGGCTAGACCATAGGCGAAAAAAGCTACAATATTACTTTTGTTAACAAGAATTACTTGCAATAATGACCGCCAAATTGTTCTCGGCCTACATCGAGGCCTTG‑GAGAACGCTCACTTTTTTCTTCATCAGGTCCGGCCAGCATGACACGTACTCAACCTTCCGCTTCGCC > NC_002947/6053397‑6053685 | ccAACATCTGCTTGGCCAGACGCCCACCCACATCACCACAACCCACCACCATCACGGAAAGGTCTGACATCTCTAAACTCCCTAGACCAATTGATCAGCTTGGCCACGCTACACGATGGGCGGCTAGACCATAGGCGAAAAAAGCTAc > 7:216320/1‑148 (MQ=255) cAACATCTGCTTGGCCAGACGCCCACCCACATCACCACAACCCACCACCATCACGGAAAGGTCTGACATCTCTAAACTCCCTAGACCAATTGATCAGCTTGGCCACGATACACGATGGGCGGCTAGACCATAGGCGAAAAAAGCTACaa > 1:152030/1‑149 (MQ=255) cATCTGCTTGGCCAGACGCCCACCCACATCACCACAACCCACCACCATCACGGAAAGGTCTGACATCTCTAAACTCCCTAGACCAATTGATCAGCTTGGCCACGCTACACGATGGGCGGCTAGACCATAGGCGAAAAAAGCTACAatat < 3:56720/149‑1 (MQ=255) cATCTGCTTGGCCAGACGCCCACCCACATCACCACAACCCACCACCATCACGGAAAGGTCTGACATCTCTAAACTCCCTAGACCAATTGATCAGCTTGGCCACGCTACACGATGGGCGGCTAGACCATAGGCGAAAAAAGCTACAatat < 8:176276/149‑1 (MQ=255) tCTGCTTGGCCAGACGCCCACCCACATCACCACAACCCACCACCATCACGGAAAGGTCTGACATCTCTAAACTCCCTAGACCAATTGATCAGCTTGGCCACGCTACCCGATGGTCGGCTAGCCCATCGGCGAAAAAAGCTACAAAAtt > 8:114520/1‑148 (MQ=255) ggCCAGACGAACACCCACATCAACACAACCCACCACCATCACGGAAAGGTCTGACATCTCTAAACTCCCTATACCAATTGATCAGCTTCGCCACTCTACACTATTGGCGGCTAGACCATAGGCGAAAAAAGCTACAATATTACtttt < 7:239988/147‑1 (MQ=255) gcccAGACGCCCACCCACATCACCACAACCCACCACCATCACGGAAAGGTCTGACATCTCTAAACTCCCTAGACCAATTGATCAGCTTGGCCACGCTACACGATGGGCGGCTAGACCATAGGCGAAAAAAGCTACAATATTACTTTTGt < 1:285611/147‑1 (MQ=255) gCCAGACGCCCACCCACATCACCACAACCCACCACCATCACGGAAAGGTCTGACATCTCTAAACTCCCTAGACCAATTGATCAGCTTGGCCACGCTACACGATGGGCGGCTAGACCATAGGCGAAAAAAGCTACAATATTACTTTTGt < 5:101852/148‑1 (MQ=255) cAGACGCCCACCCACATCACCACAACCCACCACCATCACGGAAAGGTCTGACATCTCTAAACTCCCTAGACCAATTGATCAGCTTGGCCACGCTACACGATGGGCGGCTAGACCATAGGCGAAAAAAGCTACAATATTACTTTTGTTaa < 4:177720/149‑1 (MQ=255) aGACGCCCACCCACATCACCACAACCCACCACCATCACGGAAAGGTCTGACATCTCTAAACTCCCTAGACCAATTGATCAGCTTGGCCACGCTACACGATGGGCGGCTAGACCATAGGCGAAAAAAGCTACAATATTACTTTTGTTaa > 8:253934/1‑148 (MQ=255) gCCCACCCACATCACCACAACCCACCACCATCACGGAAAGGTCTGACATCTCTAAACTCCCTAGACCAATTGATCAGCTTGGCCACGCTACACGATGGGCGGCTAGACCATAGGCTAAAAAAGCTCTAATATTACTTGTGTTAACAAg > 2:303401/1‑148 (MQ=255) ccacccacATCACCACAACCCACCACCATCACGGAAAGGTCTGACATCTCTAAACTCCCTAGACCAATTGATCAGCTTGGCCACGCTACACGATGGGCGGCTAGACCATAGGCGAAAAAAGCTACAATATTACTTTTGTTAACAAGAAt > 8:83098/1‑149 (MQ=255) acccacATCACCACAACCCACCACCATCACGGAAAGGTCTGACATCTCTAAACTCCCTAGACCAATTGATCAGCTTGGCCACGCTACACGATGGGCGGCTAGACCATAGGCGAAAAAAGCTACAATATTACTTTTGTTAACAAGAATTa < 7:204264/149‑1 (MQ=255) acaTCACCACAACCCACCACCATCACGGAAAGGTCTGACATCTCTAAACTCCCTAGACCAATTGATCAGCTTGGCCACGCTACACGATGGGCGGCTAGACCATAGGCGAAAAAAGCTACAATATTACTTTTGTTAACAAGAATTACTTg < 3:15913/149‑1 (MQ=255) cacaACCCTCCACCATCACGGAAAGGTCTGACATCTCTAAACTCCCTAGACCAATTGATCAGCTTGGCCACGCTACACGATGGGCGGCTAGACCATAGGCGAAAAAAGCTACAATATTACTTTTGTTAACAAGAATTACTTGCaataat < 7:264254/149‑1 (MQ=255) ccaccaccaTCACGGAAAGGTCTGACATCTCTAAACTCCCTAGACCAATTGATCAGCTTGGCCACGCTACACGATGGGCGGCTAGACCATAGGCGAAAAAAGCTACAATATTACTTTTGTTAACAAGAATTACTTGCAATAATGACCGc < 6:211056/149‑1 (MQ=255) ccctCAAGGAAAGGTCTGACATCTCTAAACTCCCTAGACCAATTGATCAGCTTGGCCACGCTACACGATGGGCGGCTAGACCATAGGCGAAAAAAGCTACAATATTACTTTTGTTAACAAGAATTACTTGCAATAATGACCGCCAAAtt < 7:114520/146‑1 (MQ=255) cACGGAAAGGTCTGACATCTCTAAACTCCCTAGACCAATTGATCAGCTTGGCCACGCTACACGATGGGCGGCTAGACCATAGGCGAAAAAAGCTACAATATTACTTTTGTTAACAAGAATTACTTGCAATAATGACCGCCAAATTGTtc > 2:64918/1‑149 (MQ=255) aCGGAAAGGTCTGACATCTCTAAACTCCCTAGACCAATTGATCAGCTTGGCCACGCTACACGATGGGCGGCTAGACCATAGGCGAAAAAAGCTACAATATTACTTTTGTTAACAAGAATTACTTGCAATAATGACCGCCAAATTGTtc < 7:253934/148‑1 (MQ=255) ggAAAGGTCTGACATCTCTAAACTCCCTAGACCAATTGATCAGCTTGGCCACGCTACACGATGGGCGGCTAGACCATAGGCGAAAAAAGCTACAATATTACTTTTGTTAACAAGAATTACTTGCAATAATGAcc > 1:77005/1‑134 (MQ=255) ggAAAGGTCTGACATCTCTAAACTCCCTAGACCAATTGATCAGCTTGGCCACGCTACACGATGGGCGGCTAGACCATAGGCGAAAAAAGCTACAATATTACTTTTGTTAACAAGAATTACTTGCAATAATGAcc < 2:77005/134‑1 (MQ=255) aaaGGTCTGACATCTCTAAACTCCCTAGACCAATTGATCAGCTTGGCCACGCTACACGATGGGCGGCTAGACCATAGGCGAAAAAAGCTACAATATTACTTTTGTTAACAAGAATTACTTGCAATAATGAcc < 3:92478/132‑1 (MQ=255) aaaGGTCTGACATCTCTAAACTCCCTAGACCAATTGATCAGCTTGGCCACGCTACACGATGGGCGGCTAGACCATAGGCGAAAAAAGCTACAATATTACTTTTGTTAACAAGAATTACTTGCAATAATGAcc > 4:92478/1‑132 (MQ=255) gTCTGACATCTCTAAACTCCCTAGACCAATTGATCAGCTTGGCCACGCTACACGATGGGCGGCTAGACCATAGGCGAAAAAAGATACAATATTACTTTTGTTAACAAGAATTACTTGCAATAATGACCGCCAAATTGTTCTCGGc > 1:295577/1‑145 (MQ=255) gTCTGACATCTCTAAACTCCCTAGACCAATTGATCACCTTCGCCACGCAACACGATGGGCGGCTAGACCATAGGCGAAAAAAGCAACAATAATACTTTTGTAAACAAGAATTACTTGCAATAATGACCGCCAAATTGTTCTCGGc < 2:295577/145‑1 (MQ=255) tGACATCTCTAAACTCCCTAGACCAATTGATCAGCTTGGCCACGCTACACGATGGGCGGCTAGACCATAGGCGAAAAAAGCTACAATATTACTTTTGTTAACAAGAATTACTTGCAATAATGAcc < 2:74946/125‑1 (MQ=255) tGACATCTCTAAACTCCCTAGACCAATTGATCAGCTTGGCCACGCTACACGATGGGCGGCTAGACCATAGGCGAAAAAAGCTACAATATTACTTTTGTTAACAAGAATTACTTGCAATAATGAcc > 1:74946/1‑125 (MQ=255) tctAAACTCCCTAGACCAATTGATCAGCTTGGCCACGCTACACGATGGGCGGCTAGACCATAGGCGAAAAAAGCTACAATATTACTTTTGTTAACAAGAATTACTTGCaa < 6:294205/110‑1 (MQ=255) tctAAACTCCCTAGACCAATTGATCAGCTTGGCCACGCTACACGATGGGCGGCTAGACCATAGGCGAAAAAAGCTACAATATTACTTTTGTTAACAAGAATTACTTGCaa > 5:294205/1‑110 (MQ=255) tctAAACTCCCTAGACCAATTGATCAGCTTGGCCACGCTACACGATGGGCGGCTAGACCATAGGCGAAAAAAGCTACAATATTACTTTTGTTAACAAGAATTACTTGCAATAATGACCGCCAAATTGTTCTCg < 2:55831/133‑1 (MQ=255) tctAAACTCCCTAGACCAATTGATCAGCTTGGCCACGCTACACGATGGGCGGCTAGACCATAGGCGAAAAAAGCTACAATATTACTTTTGTTAACAAGAATTACTTGCAATAATGACCGCCAAATTGTTCTCg > 1:55831/1‑133 (MQ=255) tAAACTCCCTAGACCAATTGATCAGCTTGGCCACGCTACACGATGGGCGGCTAGACCATAGGCGAAAAAAGCTACAATATTACTTTTGTTAACAAGAATTACTTGCAATAATGACCGCCAAATTGTTCTCGGCCTACATCGAGGCCTTg < 7:83098/149‑1 (MQ=255) aaCTCCCTAGACCAATTGATCAGCTTGGCCACGCTACACGATGGGCGGCTAGACCATAGGCGAAAAAAGCTACAATATTACTTTTGTTAACAAGAATTACTTGCAATAATGACCGCCAAATTGTTCTCGGCCTACATCGAGGCCTTg‑g < 8:216320/148‑1 (MQ=255) tCCCTAGACCAATTGATCAGCTTGGCCACGCTACACGATGGGCGGCTAGACCATAGGCGAAAAAAGCTACAATATTACTTTTGTTAACAAGAATTACTTGCAATAATGACCGCCAAATTGTTCTCGGCCTACATCGAGGCCTTG‑GAGaa > 8:83007/1‑149 (MQ=255) aTTGATCAGCTTGGCCACGCTACACGATGGGCGGCTAGACCATAGGCGAAAAAAGCTACAATATTACTTTTGTTAACAAGAATTACTTGCAATAATGACCGCCAAATTGTTCTCGGCCTACATCGAGGCCTTG‑GAGAACGCt > 3:48777/1‑142 (MQ=255) aTTGATCAGCTTGGCCACGCTACACGATGGGCGGCTAGACCATAGGCGAAAAAAGCTACAATATTACTTTTGTTAACAAGAATTACTTGCAATAATGACCGCCAAATTGTTCTCGGCCTACATCGAGGCCTTG‑GAGAACGCt < 4:48777/142‑1 (MQ=255) cTTGGCCACGCTACACGATGGGCGGCTAGACCATAGGCGAAAAAAGCTACAATATTACTTTTGTTAACAAGAATTACTTGCAATAATGACCGCCAAATTGTTCTCGGCCTACATCGAGGCCTTG‑GAGAACGCTCACTTTTTTCTtcatc < 7:25531/149‑1 (MQ=255) ccACGCTACACGATGGGCGGCTAGACCATAGGCGAAAAAAGCTACAATATTACTTTTGTTAACAAGAATTACTTGCAATAATGACCGCCAAATTGTTCTCGGCCTACATCGAGGCCTTG‑GAGAACGCTCACTTTTTTCTTCATCAGGt < 1:131753/148‑1 (MQ=255) ccACGCTACACGATGGGCGGCTAGACCATAGGCGAAAAAAGCTACAATATTACTTTTGTTAACAAGAATTACTTGCAATAATGACCGCCAAATTGTTCTCGGCCTACATCGAGGCCTTG‑GAGAACGCTCACTTTTTTCTTCATCAGGt > 2:131753/1‑148 (MQ=255) ccACGCTACACGATGGGCGGCTAGACCATAGGCGAAAAAAGCTACAATATTACTTTTGTTAACAAGAATTACTTGCAATAATGACCGCCAAATTGTTCTCGGCCTACATCGAGGCCTTG‑GAGAACGCTCACTTTTTTCTTCATCAGGTc > 8:247613/1‑149 (MQ=255) cACGCTACACGATGGGCGGCTAGACCATAGGCGAAAAAAGCT‑‑AATATTACTTTTGTTAACAAGAATTACTTGCAATAATGACCGCCAAATTGTTCTCGGCCTACATCGAGGCCTTG‑ga > 4:162632/1‑118 (MQ=255) cACGCTACACGATGGGCGGCTAGACCATAGGCGAAAAAAGCT‑‑AATATTACTTTTGTTAACAAGAATTACTTGCAATAATGACCGCCAAATTGTTCTCGGCCTACATCGAGGCCTTG‑ga > 4:158264/1‑118 (MQ=255) cACGCTACACGATGGGCGGCTAGACCATAGGCGAAAAAAGCT‑‑AATATTACTTTTGTTAACAAGAATTACTTGCAATAATGACCGCCAAATTGTTCTCGGCCTACATCGAGGCCTTG‑ga < 3:158264/118‑1 (MQ=255) cACGCTACACGATGGGCGGCTAGACCATAGGCGAAAAAAGCT‑‑AATATTACTTTTGTTAACAAGAATTACTTGCAATAATGACCGCCAAATTGTTCTCGGCCTACATCGAGGCCTTG‑ga < 3:162632/118‑1 (MQ=255) gATGGGCGGCTAGACCATAGGCGAAAAAAGCTACAATATTACTTTTGTTAACAAGAATTACTTGCAATAATGACCGCCAAATTGTTCTCGGCCTACATCGAGGCCTTG‑GAGAACGCTCACTTTTTTCTTCATCAGGTCCGGCCAGCAt > 6:240615/1‑148 (MQ=255) ggcggcTAGACCATAGGCGAAAAAAGCTACAATATTACTTTTGTTAACAAGAATTACTTGCAATAATGACCGCCAAATTGTTCTCGGCCTACATCGAGGCCTTGAGAGAACGCTCACTTTTTTCTTCATCAGGTCCGGCCAGCATGaca < 1:64918/149‑1 (MQ=255) gcggcTAGACCATAGGCGAAAAAAGCTACAATATTACTTTTGTTAACAAGAATTACTTGCAATAATGACCGCCAAATTGTTCTCGGCCTACATCGAGGCCTTG‑GAGAACGCTCACTTTTTTCTTCATCAGGTCCGGCCAGCATGacac < 7:247613/148‑1 (MQ=255) tAGACCATAGGCGAAAAAAGCTACAATATTACTTTTGTTAACAAGAATTACTTGCAATAATGACCGCCAAATTGTTCTCGGCCTACATCGAGGCCTTG‑GAGAACGCTCACTTTTTTCTTCATCAGGTCCGGCCAGCATGACACGTACt > 2:199273/1‑148 (MQ=255) tAGACCATAGGCGAAAAAAGCTACAATATTACTTTTGTTAACAAGAATTACTTGCAATAATGACCGCCAAATTGTTCTCGGCCTACATCGAGGCATTG‑GAGAACGCTCACTTTTTTCTTCAAAAGTTCCGTCCAGCCTGACACGAACt > 3:126710/1‑148 (MQ=255) gACCATAGGCGAAAAAAGCTACAATATTACTTTTGTTAACAAGAATTACTTGCAATAATGACCGCCAAATTGTTCTCGGCCTACATCGAGGCCTTG‑GAGAACGCTCACTTTTTTCTTCATCAGGTCCGGCCAg < 3:238400/133‑1 (MQ=255) gACCATAGGCGAAAAAAGCTACAATATTACTTTTGTTAACAAGAATTACTTGCAATAATGACCGCCAAATTGTTCTCGGCCTACATCGAGGCCTTG‑GAGAACGCTCACTTTTTTCTTCATCAGGTCCGGCCAg > 4:238400/1‑133 (MQ=255) gACCATAGGCGAAAAAAGCTACAATATTACTTTTGTTAACAAGAATTACTTGCAATAATGACCGCCAAATTGTTCTCGGCCTACATCGAGGCCTTG‑GAGAACGCTCACTTTTTTCTTCATCAGGTCCGGCCAGCATGACACGTACTCaa > 8:193020/1‑149 (MQ=255) cATAGGCGAAAAAAGCTACAATATTACTTTTGTTAACAAGAATTACTTGCAATAATGACCGCCAAATTGTTCTCGGCCTACATCGAGGCCTTG‑GAGAACGCTCACTTTTTTCTTCATCAGGTcc > 3:210237/1‑124 (MQ=255) cATAGGCGAAAAAAGCTACAATATTACTTTTGTTAACAAGAATTACTTGCAATAATGACCGCCAAATTGTTCTCGGCCTACATCGAGGCCTTG‑GAGAACGCTCACTTTTTTCTTCATCAGGTcc < 4:210237/124‑1 (MQ=255) cATAGGCGAAAAAAGCTACAATATTACTTTTGTTAACAAGAATTACTTGCAATAATGACCGCCAAATTGTTCTCGGCCTACATCGAGGCCTTG‑GAGAACGCTCACTTTTTTCTTCATCAGGTCCGGCCAGCATGACACGTACTCAACCt > 4:289457/1‑149 (MQ=255) aTAGGCGAAAAAAGCTACAATATTACTTTTGTTAACAAGAATTACTTGCAATAATGACCGCCAAATTGTTCTCGGCCTACATCGAGGCCTTG‑GAGAACGCTCACTTTTTTCTTCATCAGGTCCGGCCAGCATGACACGTCCTCAACCtt > 2:145581/1‑149 (MQ=255) tAGGCGAAAAAAGCTACAATATTACTTTTGTTAACAAGAATTACTTGCAATAATGACCGCCAAATTGTTCTCGGCCTACATCGAGGCCTTG‑GAGAACGCTCACTTTTTTCTTCATCAGGTCCGGCCAGCATGACACGTACTCAACCTTc > 6:132452/1‑149 (MQ=255) aGGCGAAAAAAGCTACAATATTACTTTTGTTAACAAGAATTACTTGCAATAATGACCGCCAAATTGTTCTCGGCCTACATCGAGGCCTTG‑GAGAACGCTCACTTTTTTCTTCATCAGGTCCGGCCAGCATGACACGTACTCAACCTTcc > 7:58053/1‑149 (MQ=255) gCGAAAAAAGCTACAATATTACTTTTGTTAACAAGAATTACTTGCAATAATGACCGCCAAATTGTTCTCGGCCTACATCGAGGCCTTG‑GAGAACGCTCACTTTTTTCTTCATCAGGTCCGGCCAGCATGACACGTACTCAACCTTCCGc > 1:189032/1‑149 (MQ=255) aaaaaaGCTACAATATTACTTTTGTTAACAAGAATTACTTGCAATAATGACCGCCAAATTGTTCTCGGCCTACATCGAGGCCTTG‑GAGAACGCTCACTTTTTTCTTCATCAGGTCCGGCCAGCATGACACGTACTCAACCTTCCGCTTc > 1:102811/1‑149 (MQ=255) aaaaaaGCTACAATATTACTTTTGTTAACAAGAATTACTTGCAATAATGACCGCCAAATTGTTCTCGGCCTACATCGAGGCCTTG‑GAGAACGCTCACTTTTTTCTTCATCAGGTCCGGCCAGCATGACACGTACTCAACCTTCCGCTTc < 1:199273/149‑1 (MQ=255) aaaaaaGCTACAATATTACTTTTGTTAACAAGAATTACTTGCAATAATGACCGCCAAATTGTTCTCGGCCTACATCGAGGCCTTG‑GAGAACGCTCACTTTTTTCTTCATCAGGTCCGGCCAGCATGACACGTACTCAACCTTCCGCTTc > 2:198294/1‑149 (MQ=255) aaaaaaGCTACAATATTACTTTTGTTAACAAGAATTACTTGCAATAATGACCGCCAAATTGTTCTCGGCCTACATCGAGGCCTTG‑GAGAACGCTCACTTTTTTCTTCATCAGGTCCGGCCAGCATGACACGTACTCAACCTTCCGCTTc < 7:83007/149‑1 (MQ=255) aaGCTACAATATTACTTTTGTTAACAAGAATTACTTGCAATAATGACCGCCAAATTGTTCTCGGCCTACATCGAGGCCTTG‑GAGAACGCTCACTTTTTTCTTCATCAGGTCCGGCCAGCATGACACGTACTCAACCTTCCGCTTCGcc > 2:8293/1‑148 (MQ=255) | CCAACATCTGCTTGGCCAGACGCCCACCCACATCACCACAACCCACCACCATCACGGAAAGGTCTGACATCTCTAAACTCCCTAGACCAATTGATCAGCTTGGCCACGCTACACGATGGGCGGCTAGACCATAGGCGAAAAAAGCTACAATATTACTTTTGTTAACAAGAATTACTTGCAATAATGACCGCCAAATTGTTCTCGGCCTACATCGAGGCCTTG‑GAGAACGCTCACTTTTTTCTTCATCAGGTCCGGCCAGCATGACACGTACTCAACCTTCCGCTTCGCC > NC_002947/6053397‑6053685 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |