Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 3,735,139 Δ1 bp 8.9% coding (36/3093 nt) PP_3302 → RND family transporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029473,735,1390A. 8.9% 172.8 / 11.3 56coding (36/3093 nt)PP_3302RND family transporter
Reads supporting (aligned to +/- strand):  ref base A (30/21);  new base . (3/2);  total (33/23)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.86e-01

GACCTGCACGCTGGCGATCGGATCGTGGCACTGGGTGCGCATCTGCTGCGCGATGGCGTCGAGGTCATGGAACAGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTACGCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCAAGCTGGGCCGTGCAGAAGATCCGCCCTTCACCGTCAAGCAGATGACGATTATCACTGCCTGGCCCGGCGCCACTGCG  >  NC_002947/3734997‑3735286
                                                                                                                                              |                                                                                                                                                     
gACCTGCACGCTGGCGATCGGATCGTGGCACTGGGTGCGCATCTGCTGCGCGATGGCGTCGAGGTCATGGAACAGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTAcgc                                                                                                                                                >  3:12379/1‑149 (MQ=255)
 aCCTGCACGCTGGCGATCGGATCGTGGCACTGGGTGCGCATCTGCTGCGCGATGGCGTCGAGGTCATGGAACAGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTAcgc                                                                                                                                                >  5:122095/1‑148 (MQ=255)
 aCCTGCACGCTGGCGATCGGATCGTGGCACTGGGTGCGCATCTGCTGCGCGATGGCGTCGAGGTCATGGAACAGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTAcgc                                                                                                                                                >  6:104725/1‑148 (MQ=255)
  ccTGTACGCTGGCGATCGGATCGTGGCACTGGGTGCGCATCTGCTGCGCGATGGCGTCGAGGTCATGGAACAGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTACgcga                                                                                                                                              <  2:202197/149‑1 (MQ=255)
    tGCACGCTGGCGATCGGATCGTGGCACTGGGTGCGCATCTGCTGCGCGATGGCGTCGAGGTCATGGAACAGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTACgcgagc                                                                                                                                            >  4:307798/1‑149 (MQ=255)
      cACGCTGGCGATCGGATCGTGGCACTGGGTGCGCATCTGCTGCGCGATGGCGTCGAGGTCATGGAACAGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTACgcgagcga                                                                                                                                          <  5:104725/149‑1 (MQ=255)
        cGCTGGCGATCGGATCGTGGCACTGGGTGCGCATCTGCTGCGCGATGGCGTCGAGGTCATGGAACAGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTACGCGAGCGat                                                                                                                                         >  1:81203/1‑148 (MQ=255)
        cGCTGGCGATCGGATCGTGGCACTGGGTGCGCATCTGCTGCGCGATGGCGTCGAGGTCATGGAACAGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTACGCGAGCGat                                                                                                                                         >  7:252526/1‑148 (MQ=255)
             gCGATCGGATCGTGGCACTGGGTGCGCATCTGCTGCGCGATGGCGTCGAGGTCATGGAACAGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTACGCGAGCGatcaatc                                                                                                                                    <  6:122095/148‑1 (MQ=255)
                  cggatcgTGGCACTGGGTGCGCATCTGCTGCGCGATGGCGTCGAGGTCATGGAACAGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCGTACTgcgagcgc                                                                                                                                          >  4:299033/1‑136 (MQ=255)
                  cggatcgTGGCACTGGGTGCGCATCTGCTGCGCGATGGCGTCGAGGTCATGGAACAGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCGTACTgcgagcgc                                                                                                                                          >  4:155939/1‑136 (MQ=255)
                  cggatcgTGGCACTGGGTGCGCATCTGCTGCGCGATGGCGTCGAGGTCATGGAACAGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCGTACTgcgagcgc                                                                                                                                          <  3:299033/137‑2 (MQ=255)
                  cggatcgTGGCACTGGGTGCGCATCTGCTGCGCGATGGCGTCGAGGTCATGGAACAGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCGTACTgcgagcgc                                                                                                                                          <  3:155939/137‑2 (MQ=255)
                     atcgTGGCACTGGGTGCGCATCTGCTGCGCGATGGCGTCGAGGTCATGGAACAGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTACGCGAGCGATCAATCACCCTCTTc                                                                                                                           <  4:123640/149‑1 (MQ=255)
                     atcgTGGCACTGGGTGCGCATCTGCTGCGCGATGGCGTCGAGGTCATGGAACAGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTACGCGAGCGATCAATCACCCTCTTc                                                                                                                           <  3:307798/149‑1 (MQ=255)
                             aCTGGGTGCGCATCTGCTGCGCGATGGCGTCGAGGTCATGGAACAGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTACGCGAGCGATCAATCACCCTCTTCCTGATtgt                                                                                                                   >  2:153495/1‑149 (MQ=255)
                               tGGGTGCGCATCTGCTGCGCGATGGCGTCGAGGTCATGGAACAGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTACGCGAGCGATCAATCACCCTCTTCCTGATTGTGc                                                                                                                 >  3:210663/1‑149 (MQ=255)
                                        aTCTGCTGCGCGATGGCGTCGAGGTCATGGAACAGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTACGCGAGCGATCAATCACCCTCTTCCTGAtt                                                                                                                     >  1:26237/1‑136 (MQ=255)
                                        aTCTGCTGCGCGATGGCGTCGAGGTCATGGAACAGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTACGCGAGCGATCAATCACCCTCTTCCTGAtt                                                                                                                     <  2:26237/136‑1 (MQ=255)
                                             ctgcGCGATGGCGTCGAGGTCATGGAACAGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTACGCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCtt                                                                                                      <  1:153495/145‑1 (MQ=255)
                                                cgcgCTGGCGTCGATGGCATGGAACAGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTACGCGAGCGATCAATCAc                                                                                                                                  <  5:237642/115‑1 (MQ=255)
                                                            gAGGTCATGGAACAGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTACGCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCttt                                                                                   <  7:229712/149‑1 (MQ=255)
                                                             aGGTCATGGAACAGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTACGCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCtttt                                                                                  <  4:210663/149‑1 (MQ=255)
                                                               gTCATGGAACAGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTTCGTTTCAACTAATCAGCGCTCGCAGTACGCGAGCGATCAATCACCCTCTTACTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCttttt                                                                                 >  7:161526/1‑148 (MQ=255)
                                                                  aTGGAACAGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTACGCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCttttt                                                                                 >  1:312667/1‑145 (MQ=255)
                                                                  aTGGAACAGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTACGCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCttttt                                                                                 <  2:312667/145‑1 (MQ=255)
                                                                    ggAACAGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTACGCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGc                                                                                       <  4:146596/137‑1 (MQ=255)
                                                                    ggAACAGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTACGCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGc                                                                                       >  3:146596/1‑137 (MQ=255)
                                                                      aaCAGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTACGCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCAAGCTgg                                                                         <  4:12379/149‑1 (MQ=255)
                                                                       aCAGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTACGCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCAAGCTggg                                                                        >  2:162554/1‑149 (MQ=255)
                                                                         aGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTACGCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCAAGCTGGGcc                                                                      <  2:81203/149‑1 (MQ=255)
                                                                         aGGCTCAAACAGCTCAGGGCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTACGCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCAAGCTGGGcc                                                                      <  8:252526/149‑1 (MQ=255)
                                                                             tCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTACGCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCAAGCTGGGCCGTg                                                                   >  4:233944/1‑148 (MQ=255)
                                                                                   aGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTACGCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCAAGCTGGGCCGTGCag                                                                >  3:246972/1‑145 (MQ=255)
                                                                                      tCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTACGCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCAAGCTGGGCCGTGCAGAAGATcc                                                         >  6:78004/1‑149 (MQ=255)
                                                                                             aTGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTACGCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCAAGCTGGGCCGTGCAGAAGATCCGCCCtt                                                   >  7:291062/1‑148 (MQ=255)
                                                                                               ggggCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTACGCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCtt                                                                                                      >  6:53225/1‑95 (MQ=255)
                                                                                               ggggCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTACGCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCtt                                                                                                      <  5:53225/95‑1 (MQ=255)
                                                                                                gggCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTACGCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCAAGCTGGGCCGTg                                                                   >  7:230999/1‑129 (MQ=255)
                                                                                                gggCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTACGCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCAAGCTGGGCCGTg                                                                   <  8:230999/129‑1 (MQ=255)
                                                                                                         ccaTGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTACGCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCAAGCTGGGCCGTGCAGAAGATCCGCCCTTCACCGTCAAg                                         >  4:117413/1‑146 (MQ=255)
                                                                                                          caTGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTACGCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCAAGCTGGGCCGTGCAGAAGATCCGCCCTTCACCGTCAAg                                         >  1:32536/1‑145 (MQ=255)
                                                                                                          caTGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTACGCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCAAGCTGGGCCGTGCAGAAGATCCGCCCTTCACCGTCAAGCAGa                                     <  1:162554/149‑1 (MQ=255)
                                                                                                           aTGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTACGCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCAAGCTGGGCCGTGCAGAAGATCCGCCCTTCACCGTCAAGCAGAt                                    >  4:67627/1‑149 (MQ=255)
                                                                                                                     tGCGTTTCAACTTATCCGCGCTCGCAGTACGCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGTATCGCCTTCGCCGGCACGCTGGCCTTTTTCAAGCTGGGCCGTGCAGAAGATCCGCCCTTCACCGTCAAGCAGATGACGATTAt                           >  1:252783/1‑149 (MQ=255)
                                                                                                                     tGCGTTTCAACTTATCCGCGCTCGCAGTACGCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCAAGCTGGGCCGTGCAGAAGATCCGCCCTTCACCGTCAAGCAGATGACGATTAt                           >  3:141584/1‑148 (MQ=255)
                                                                                                                         tttCAACTTATCCGCGCTCGCAGTACGCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCAAGCTg                                                                          <  2:52579/97‑1 (MQ=255)
                                                                                                                         tttCAACTTATCCGCGCTCGCAGTACGCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCAAGCTg                                                                          >  1:52579/1‑97 (MQ=255)
                                                                                                                             aaCTTATCCGCGCTCGCAGTACGCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCAAGCTGGGCCGTGCAGAAGATCCGCCCTTCACCGTCAAGCAGATGACGATTATCACTGCCt                   <  3:67627/148‑1 (MQ=255)
                                                                                                                             aaCTTATCCGCGCTCGCAGTACGCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCAAGCTGGGCCGTGCAGAAGATCCGCCCTTCACCGTCAAGCAGATGACGATTATCACTGCCt                   <  2:32536/148‑1 (MQ=255)
                                                                                                                              aCTTATCCGCGCTCGCAGTACGCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCAGGCTGGGCCGTGCAGAAGATCCGCCCGTCACCGGCAACCAGATGACGATTATCACTGCCTgg                 >  4:28554/1‑149 (MQ=255)
                                                                                                                                  aTCCGCGCTCGCAGTACGCGAGCGATCAATCACGCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCAAGCTGGGCCGTGCAGAAGATCCGCCCTTCACCGTCAAGCAGATGACGATTATCACTGCCTGGCCCg             >  5:97047/1‑149 (MQ=255)
                                                                                                                                   tCCGCGCTCGCAGTACGCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCAAGCTGGGCCGTGCAGAAGATCCGCCCTTCACCGTCAAGCAGATGACGATTATCACTGCCTGGCCCgg            >  7:212314/1‑149 (MQ=255)
                                                                                                                                    gatcgcTCGCGTACTGCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCAAGCTGGGCCGTGCAGAAGATCCGCCCTTCACCGTCAAGCAGATGACGATTATCACTGCCTGGCCCGgc           >  3:3459/4‑149 (MQ=255)
                                                                                                                                          tCGCAGTACGCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCAAGCTGGGCCGTGCAGAAGATCCGCCCTTCACCGTCAAGCAGATGACGATTATCACTGCCTGGCCCGGCGCCACt     >  8:141545/1‑149 (MQ=255)
                                                                                                                                            gCAGTACGCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCAAGCTGGGCCGTGCAGAAGATCCGCCCTTCACCGTCAAGCAGATGACGATTATCACTGCCTGGCCCGGCGCCACTgc   >  2:227243/1‑149 (MQ=255)
                                                                                                                                              aGTACGCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCAAGCTGGGCCGTGCAGAAGATCCGCCCTTCACCGTCAAGCAGATGACGATTATCACTGCCTGGCCCGGCGCCACTgcg  >  2:59185/1‑148 (MQ=255)
                                                                                                                                              aGTACGCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCAAGCTGGGCCGTGCAGAAGATCCGCCCTTCACCGTCAAGCAGATGACGATTATCACTGCCTGGCCCGGCGACACTgcg  >  8:284205/1‑148 (MQ=255)
                                                                                                                                              |                                                                                                                                                     
GACCTGCACGCTGGCGATCGGATCGTGGCACTGGGTGCGCATCTGCTGCGCGATGGCGTCGAGGTCATGGAACAGGCTCAAACAGCTCAGGTCATGGGGCACCAACCATGAGCCAGCTGCGTTTCAACTTATCCGCGCTCGCAGTACGCGAGCGATCAATCACCCTCTTCCTGATTGTGCTGATCGCCTTCGCCGGCACGCTGGCCTTTTTCAAGCTGGGCCGTGCAGAAGATCCGCCCTTCACCGTCAAGCAGATGACGATTATCACTGCCTGGCCCGGCGCCACTGCG  >  NC_002947/3734997‑3735286

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: