Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,151,933:1 | +C | 8.9% | intergenic (+123/+28) | PP_3655 → / ← PP_3656 | cytosine/purine/uracil/thiamine/allantoin permease family protein/aromatic compound‑specific porin |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,151,933 | 1 | . | C | 8.9% | 165.9 / 10.8 | 45 | intergenic (+123/+28) | PP_3655/PP_3656 | cytosine/purine/uracil/thiamine/allantoin permease family protein/aromatic compound‑specific porin |
Reads supporting (aligned to +/- strand): ref base . (17/24); new base C (2/2); total (19/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.55e-01 |
GCGCCAAGCTGGCAGCGATGGCTTAATCGGTACTGGCCTTTCGTTGCAAAAGATGAAACGGCTGGGTGCAGGCGTCCGAACGCCTGGTGCAATTCAGGCGGAAAACAGCGAACCCTTCGATTGGGAATAAATGG‑CGAAAAATGGGCCGG‑CTTCAGAAGGCCGGCCCGTTTCGCTATTTAGAAGTTGAAGGTGTAGCGCATGATCAGGCGATTTTCATTAGCGCTGTCAGCGTAGGTCGAGCGGTTCGTGGAGTTACGCCACTGAAACGAAACACCCTTCGCCGGACCACTC > NC_002947/4151785‑4152075 | gcgcCAAGCTGGCAGCGATGGCTTAATCGGTACTGGCCTTTCGTTGCAAAAGATGAAACGGCTGGGTGCAGGCGTCCGAACGCCTGGTGCAATTCAGGCGGAAAACAGCGAACCCTTCGATTGGGAATAAATGG‑CGAAAAATGGGCCgg > 2:83283/1‑149 (MQ=255) cTGGCAGCGATGGCTTAATCGGTACTGGCCTTTCGTTGCAAAAGATGAAACGGCTGGGTGCAGGCGTCCGAACGCCTGGTGCAATTCAGGCGGAAAACAGCGAACCCTTCGATTGGGAATAAATGG‑CGAAAAATGGGCCGG‑CTTCAg > 4:290757/1‑147 (MQ=255) cGATGGCTTAATCGGTACTGGCCTTTCGTTGCAAAAGATGAAACGGCTGGGTGCAGGCGTCCGAACGCCTGGTGCAATTCAGGCGGAAAACAGCGAACCCTTCGATTGGGAATAAATGG‑CGAAAAACGGTCCGGCCTTCTGAa‑gccggc < 3:12531/149‑1 (MQ=255) cTTAATCGGTACTGGCCTTTCGTTGCAAAAGATGAAACGGCTGGGTGCAGGCGTCCGAACGCCTGGTGCAATTCAGGCGGAAAACAGCGAACCCTTCGATTGGGAATAAATGG‑CGAAAAATGGGCCGG‑CTTCAGAAGGCCGGCCCGttt > 7:144165/1‑149 (MQ=255) cTTAATCGGTACTGGCCTTTCGTTGCAAAAGATGAAACGGCTGGGTGCAGGCGTCCGAACGCCTGGTGCAATTCAGGCGGAAAACAGCGAACCCTTCGATTGGGAATAAATGG‑CGAAAAATGGGCCGG‑CTTCAGAAGGCCGGCCCGttt < 3:290757/149‑1 (MQ=255) aaTCGGTACTGGCCTTTCGTTGCAAAAGATGAAACGGCTGGGTGCAGGCGTCCGAACGCCTGGTGCAATTCAGGCGGAAAACAGCGAACCCTTCGATTGGGAATAAATGG‑CGAAAAATGGGCCGG‑CTTCAGAAGGCCGGCCCGTTTc < 7:34169/147‑1 (MQ=255) aTCGGTACTGGCCTTTCGTTGCAAAAGATGAAACGGCTGGGTGCAGGCGTCCGAACGCCTGGTGCAATTCAGGCGGAAAACAGCGAACCCTTCGATTGGGAATAAATGG‑CGAAAAATGGGCCGG‑Ctt > 4:17390/1‑127 (MQ=255) aTCGGTACTGGCCTTTCGTTGCAAAAGATGAAACGGCTGGGTGCAGGCGTCCGAACGCCTGGTGCAATTCAGGCGGAAAACAGCGAACCCTTCGATTGGGAATAAATGG‑CGAAAAATGGGCCGG‑Ctt < 3:17390/127‑1 (MQ=255) tCGGTACTGGCCTTTCGTTGCAAAAGATGAAACGGCTGGGTGCAGGCGTCCGAACGCCTGGTGCAATTCAGGCGGAAAACAGCGAACCCTTCGATTGGGAATAAATGG‑CGAAAAATGGGCCGG‑CTTCAGAAGGCCGGCCCGtt < 4:222895/143‑1 (MQ=255) tCGGTACTGGCCTTTCGTTGCAAAAGATGAAACGGCTGGGTGCAGGCGTCCGAACGCCTGGTGCAATTCAGGCGGAAAACAGCGAACCCTTCGATTGGGAATAAATGG‑CGAAAAATGGGCCGG‑CTTCAGAAGGCCGGCCCGtt > 3:222895/1‑143 (MQ=255) tGGCCTTTCGTTGCAAAAGATGAAACGGCTGGGTGCAGGCGTCCGAACGCCTGGTGCAATTCAGGCGGAAAACAGCGAACCCTTCGATTGGGAATAAATGG‑CGAAAAATGGGCCGG‑CTTCAGAAGGCCGGCCCGTTTCGCTATTTAGaa < 8:144165/149‑1 (MQ=255) gCCTTTCGTTGCAAAAGATGAAACGGCTGGGTGCAGGCGTCCGAACGCCTGGTGCAATTCAGGCGGAAAACAGCGAACCCTTCGATTGGGAATAAATGG‑CGAAAAATGGGCCGG‑CTTCAGAAGGCCGGCCCGTTTCGCTATTTAGAAGt < 8:262632/149‑1 (MQ=255) cGTTGCAAAAGATGAAACGGCTGGGGGCAGGCGTCCGAACGCCTGGGGCAATTCACGCGGAAAACACCGAACCCTTCGATTGGGAATAAATGGCCGAAAAATGGGCCGG‑CTTCAGAAGGCCGGCCCGTTTCGCTATTTAGAAGTTGaa < 1:83283/148‑1 (MQ=255) agTTTCAAAAGATGAAACGGCTGGGTGCAGGCGTCCGAACGCCTGGTGCAATTCAGGCGGAAAACAGCGAACCCTTCGATTGGGAATAAATGG‑CGAAAAATGGGCCGG‑CTTCAGAAGGCCGGCCCGTTTCGCTATTTAGAAGTTGAAg < 8:124991/147‑1 (MQ=255) ttGCAAAAGATGAAACGGCTGGGTGCAGGCGTCCGAACGCCTGGTGCAATTCAGGCGGAAAACAGCGAACCCTTCGATTGGGAATAAATGG‑CGAAAAATGGGCCGG‑CTTCAGAAGGCCGGCCCGTTTCGCTATTTAGAAGTTGAAGgtg < 4:77149/149‑1 (MQ=255) cAAAAGATGAAACGGCTGGGTGCAGGCGTCCGAACTTTTGTTTAAATTCATGCGGAAAACAGCTAACCTTTAGATTGTTAATAAATTT‑CGAAAAATGGGCCGG‑CTTCAGAAGGCCGGCCCGTTTCGCTATTTAGAAGTTGAAGGTGTa < 6:145871/148‑1 (MQ=255) aaGATGAAACGGCTGGGTGCAGGCGTCCGAACGCCTGGTGCAATTCAGGCGGAAAACAGCGAACCCTTCGATTGGGAATAAATGG‑CGAAAAATGGGCCGG‑CTTCAGAAGGCCGGCCCGTTTCGCTATTTAGAAGTTGAAGGTGTAgcgc < 8:98184/149‑1 (MQ=255) ggTGCAGGCGTCCGAACGCCTGGTGCAATTCAGGCGGAAAACAGTGAACCCTTCGATTGGGAATAAATGG‑CGAAAAATGGGCCGG‑CTTCAGAAGGCCGGCCCGTTTCGCTATTTAGAAGTTGAAGGTGTAg < 7:146423/131‑1 (MQ=255) ggTGCAGGCGTCCGAACGCCTGGTGCAATTCAGGCGGAAAACAGTGAACCCTTCGATTGGGAATAAATGG‑CGAAAAATGGGCCGG‑CTTCAGAAGGCCGGCCCGTTTCGCTATTTAGAAGTTGAAGGTGTAg > 8:146423/1‑131 (MQ=255) gcaccAGGCGTTCGGACGCCTGGTGCAATTCAGGCGGAAAACAGCGAACCCTTCGATTGGGAATAAATGG‑CGAAAAATGGGCCGG‑CTTCAGAAGGCCGGCCCGTTTCGCTATTTAGAAGTTGAAGGTGTAGCGCATGATCAGGCGAttt > 2:172956/5‑149 (MQ=255) caccAGGCGTTCGGACGCCTGGTGCAATTCAGGCGGAAAACAGCGAACCCTTCGATTGGGAATAAATGG‑CGAAAAATGGGCCGG‑CTTCAGAAGGCCGGCCCGTTTCGCTATTTAGAAGTTGAAGGTGTAGCGCATGATCAGGCGAtttt > 6:288279/4‑149 (MQ=255) tcggaCGCCTGGTGCAATTCAGGCGGAAAACAGCGAACCCTTCGATTGGGAATAAATGG‑CGAAAAATGGGCCGG‑CTTCAGAAGGCCGGCCCGTTTCGCTATTTAGAAGTTGAAGGTGTAGCGCATGATCAGGCGATTTTCATTAGCGCt > 8:41469/5‑149 (MQ=255) cGCCTGGTGCAATTCAGGCGGAAAACAGCGAACCCTTCGATTGGGAATAAATGG‑CGAAAAATGGGCCGG‑CTTCAGAAGGCCGGCCCGTTTCGCTATTTAGAAGTTGAAGGTGTAGCGCATGATCAGGCGATTTTCATTAGCGCTGTCAg > 4:65323/1‑149 (MQ=255) tGGTGCAATTCAGGCGGAAAACAGCGAACCCTTCGATTGGGAATAAATGG‑CGAAAAATGGGCCGG‑CTTCAGAAGGCCGGCCCGTTTCGCTATTTAGAAGTTGAAGGTGTAGCGCATGATCAGGCGATTTTCa > 1:259055/1‑132 (MQ=255) tGGTGCAATTCAGGCGGAAAACAGCGAACCCTTCGATTGGGAATAAATGG‑CGAAAAATGGGCCGG‑CTTCAGAAGGCCGGCCCGTTTCGCTATTTAGAAGTTGAAGGTGTAGCGCATGATCAGGCGATTTTCa < 2:259055/132‑1 (MQ=255) ttCAGGCGGAAAACAGCGAACCCTTCGATTGGGAATAAATGG‑CGAAAAATGGGCCGG‑CTTCAGAAGGCCGGCCCGTTTCGCTATTTAGAAGTTGAAGGTGTAGCGCATGATCAGGCGATTTTCATTAGCGCTGTCAGCGTAGGTCGAGc < 7:41469/149‑1 (MQ=255) cGGAAAACAGCGAACCCTTCGATTGGGAATAAATGG‑CGAAAAATGGGCCGG‑CTTCAGAAGGCCGGCCCGTTTCGCTATTTAGAAGTTGAAGGTGTAGCGCATGATCAGGCGATTTTCATTAGCGCTGTCAGCGTAGGTCGAGCGGTTCg > 7:212479/1‑149 (MQ=255) ggAAAACAGCGAACCCTTCGATTGGGAATAAATGG‑CGAAAAATGGGCCGG‑CTTCAGAAGGCCGGCCCGTTTCGCTATTTAGAAGTTGAAGGTGTAGCGCATGATCAGGCGATTTTCATTAGCGCTGTCAGCGTAGGTCGAGCGGTTCGt < 4:158919/149‑1 (MQ=255) aaaCAGCGAACCCTTCGATTGGGAATAAATGG‑CGAAAAATGGGCCGG‑CTTCAGAAGGCCGGCCCGTTTCGCTATTTAGAAGTTGAAGGTGTAGCGCATGATCAGGCGATTTTCATTAGCGCTGTCAGCGTAGGTCGAGCGGTTCGTGGa < 3:65323/149‑1 (MQ=255) aaaCAGCGAACCCTTCGATTGGGAATAAATGG‑CGAAAAATGGGCCGG‑CTTCAGAAGGCCGGCCCGTTTCGATATTTAGAAGTTGAAGGTGTAGAGCATGATCAGGCGATTTTAATTTGCGATGTCAGCGTAGGTAGAGCGGTTCGTg > 7:240979/1‑147 (MQ=255) aaCAGCGAACCCTTCGATTGGGAATAAATGG‑CGAAAAATGGGCCGG‑CTTAAGAAGGCAGGCCCGTTTCGCGATTTAGAAGTTTAACGTGGAGCACATGATCAGCCTATTTTCATTAGCGCAGTCAGCGTAGTTCGAGCGGTTCGTGGAg > 6:46846/1‑149 (MQ=255) gCGAACCCTTCGATTGGGAATAAATGG‑CGAAAAATGGGCCGG‑CTTCAGAAGGCCGGCCCGTTTCGCTATTTAGAAGTTGAAGGTGTAGCGCATGATCAGGCGATTTTCATTAGCGCTGTCAGCGTAGGTCGAGCGGTTCGTGGAGTTAc < 8:212479/149‑1 (MQ=255) cccTTCGATTGGGAATAAATGG‑CGAAAAATGGGCCGG‑CTTCAGAAGGCCGGCCCGTTTCGCTATTTAGAAGTTGAAGGTGTAGCGCATGATCAGGCGATTTTCATTAGCGCTGTCAGCGTAGGTCGAGCGGTTCGTGGAGTTACGCCAc < 1:172956/149‑1 (MQ=255) ccTTCGATTGGGAATAAATGG‑CGAAAAATGGGCCGG‑CTTCAGAAGGCCGGCCCGTTTCGCTATTTAGAAGTTGAAGGTGTAGCGCATGATCAGGCGATTTTCATTAGCGCTGTCAGCGTAGGTCGAGCGGTTCGTGGAGTTACGCCACt > 7:112930/1‑149 (MQ=255) ttCGATTGGGAATAAATGG‑CGAAAAATGGGCCGG‑CTTCAGAAGGCCGGCCCGTTTCGCTATTTAGAAGTTGAAGGTGTAGCGCa > 1:267152/1‑84 (MQ=255) ttCGATTGGGAATAAATGG‑CGAAAAATGGGCCGG‑CTTCAGAAGGCCGGCCCGTTTCGCTATTTAGAAGTTGAAGGTGTAGCGCa < 2:267152/84‑1 (MQ=255) ttCGATTGGGAATAAATGG‑CGAAAAATGGGCCGG‑CTTCAGAAGGCCGGCCCGTTTCGCTATTTAGAAGTTGAAGGTGTAGCGCATGATCAGGCGATTTTCATTAGCGCTGTCAGCGTAGGTCGAGCGGTTCGTGGAGTTACGCCACTg > 3:162969/1‑148 (MQ=255) ttGGGAATAAATGG‑CGAAAAATGGGCCGG‑CTTCAGAAGGCCGGCCCGTTTCGCTATTTAGAAGTTGAAGGTGTAGCGCATGATCAGGCGATTTTCATTAGCGCTGTCAGCGTAGGTCGAGCGGTTCGTGGAGTTACGCCACTgaaacga < 4:162969/149‑1 (MQ=255) tgtaaTAAATGG‑CGTAAAATGGGCCGG‑CTTCATAAGGTCGGCCCGTTTCGCTATTTAGAAGTTGAAGGTGTAGCACATGATGAGGCGATTTTCATTATCGCTGTCAGCGTAGGTCGATCTGTTCGTGGAGTTACGCCACTgaaacgaa < 5:46846/145‑1 (MQ=255) gAAAAATGGGCCGG‑CTTCAGAAGGCCGGCCCGTTTCGCTATTTAGAAGTTGAAGGTGTAGCGCATGATCAGGCGATTTTCATTAGCGCTGTCAGCGTAGGTCGAGCGGTTCGTGGAGTTACGCCACTgaaacgaaac < 8:130852/137‑1 (MQ=255) gAAAAATGGGCCGG‑CTTCAGAAGGCCGGCCCGTTTCGCTATTTAGAAGTTGAAGGTGTAGCGCATGATCAGGCGATTTTCATTAGCGCTGTCAGCGTAGGTCGAGCGGTTCGTGGAGTTACGCCACTgaaacgaaac > 7:130852/1‑137 (MQ=255) aaaaTGGGCCGG‑CTTCAGAAGGCCGGCCCGTTTCGCTATTTAGAAGTTGAAGGTGTAGCGCATGATCAGGCGATTTTCATTAGCGCTGTCAGCGTAGGTCGAGCGGTTCGTGGAGTTACGCCACTGAAACGAAACACCCTTCGCCGGAc < 2:244276/149‑1 (MQ=255) acgggCCGGCCTTCTGAA‑GCCGGCCCGTTTCGCTATTTAGAAGTTGAAGGTGTAGCGCATGATCAGGCGATTTTCATTAGCGCTGTCAGCGTAGGTCGAGCGGTTCGTGGAGTTACGCCACTGAAACGAAacac > 3:304123/3‑134 (MQ=255) acgggCCGGCCTTCTGAA‑GCCGGCCCGTTTCGCTATTTAGAAGTTGAAGGTGTAGCGCATGATCAGGCGATTTTCATTAGCGCTGTCAGCGTAGGTCGAGCGGTTCGTGGAGTTACGCCACTGAAACGAAacac < 4:304123/132‑1 (MQ=255) tGGGCCGG‑CTTCAGAAGGCCGGCCCGTTTCGCTATTTAGAAGTTGAAGGTGTAGCGCATGATCAGGCGATTTTCATTAGCGCTGTCAGCGTAGGTCGAGCGGTTCGTGGAGTTACGCCACTGAAACGAAACACCCTTCGCCGGACCAct < 5:288279/149‑1 (MQ=255) gggCCGGCCTTCTGAA‑GCCGGCCCGTTTCGCTATTTAGAAGTTGAAGGTGTAGCGCATGATCAGGCGATTTTCATTAGCGCTGTCAGCGTAGGTCGAGCGGTTCGTGGAGTTACGCCACTGAAACGAAACACCCTTCGCCGGACCActc > 1:296071/1‑149 (MQ=255) | GCGCCAAGCTGGCAGCGATGGCTTAATCGGTACTGGCCTTTCGTTGCAAAAGATGAAACGGCTGGGTGCAGGCGTCCGAACGCCTGGTGCAATTCAGGCGGAAAACAGCGAACCCTTCGATTGGGAATAAATGG‑CGAAAAATGGGCCGG‑CTTCAGAAGGCCGGCCCGTTTCGCTATTTAGAAGTTGAAGGTGTAGCGCATGATCAGGCGATTTTCATTAGCGCTGTCAGCGTAGGTCGAGCGGTTCGTGGAGTTACGCCACTGAAACGAAACACCCTTCGCCGGACCACTC > NC_002947/4151785‑4152075 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |