New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	353371 =	59 (1.200)	3 (0.060)	3/240	NT	5.5%	coding (959/1179 nt)	cbcV	choline/betaine/carnitine ABC transporter ATP binding protein
	?	NC_002947	353410 =	47 (1.020)					coding (920/1179 nt)	cbcV	choline/betaine/carnitine ABC transporter ATP binding protein

GCCCATACCAACCCGCTGAACGTGCTGTGCGGGCGCAGCCTGATGCGCAGCCTGGACAACTGCAAGCGGGTCAATGGCTCGGTGTGCCTGGACCCAGGTATCGATTCGTGGCTGGACCTTGGCGAAGGCGGCGCGCTCAAGCGTGCACGCCAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/353525‑353371 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccaaggTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGACCCGCTTGCAGTTGTCCAGGCTGCGCATCAGGCTGCGCCCGCACAGCACGTTCAGCGGGTTGGTATGGGCGACGAAGGTGCGCACGTATTCGTCGGCCGG  >  NC_002947/353410‑353555                                                                                                                                                                                                                                                                                                               GCCCATACCAACCCGCTGAACGTGCTGTGCGGGCGCAGCCTGATGCGCAGCCTGGACAACTGCAAGCGGGTCAATGGCTCGGTGTGCCTGGACCCAGGTATCGATTCGTGGCTGGACCTTGGCGAAGGCGGCGCGCTCAAGCGTGCAC                                                                                                                                                           <  8:42098/148‑1     ATACCAACCCGCTGAACGTGCTGTGCGGGCGCAGCCTGATGCGCAGCCTGCACAACTGCAAGCGGGTCAATGGCTCGGTGTGCCTGGACCCAGGTATCGATTCGTGGCTGGACCTTGGCGAAGGCGGCGCGCTCAAGCGTGCACGCC                                                                                                                                                        >  6:203620/1‑147        CCAACCCGCTGAACGTGCTGTGCGGGCGCAGCCTGATGCGCAGCCTGGACAACTGCAAGCGGGTCAATGGCTCGGTGTGCCTGGACCCAGGTATCGATTCGTGGCTGGACCTTGGCGAAGGCGGCGCGCTCAAGCGTGCACGCCAAGG                                                                                                                                                    <  2:89928/148‑1                                                                                                                 TGGACCTTGGCGAAGGCGGCGCGCTCAAGCGTGCACGCCAAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGACCCGCTTGCAGTTGTCCAGGCTGCGCATCAGGCTGCGCCCGCACAGCACGTTCAGCGGGT                                          >  6:219283/1‑149                                                                                                                      CTTGGCGAAGGCGGCGCGCTCAAGCGCGCACGCCAAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATT                                                                                                        <  1:201459/82‑1                                                                                                                      CTTGGCGAAGGCGGCGCGCTCAAGCGCGCACGCCAAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATT                                                                                                        >  2:201459/1‑82                                                                                                                                                     GCCAAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGACCCGCTTGCAGTTGTCCAGGCTGCGCATCAGGCTGCGCCCGCACAGCACGTTCAGCGGGTTGGTATGGGCGACGAAGGTGCGCACGTATTCGTCG       <  5:132237/148‑1                                                                                                                                                     GCCAAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGACCCGCTTGCAGTTGTCCAGGCTGCGCAACAGGCTGCGCCCGCACAGCACGTTCAGCGGGTTGGTATGGGCGACGAAGGTGCGCACGTATTCGTCGG      >  7:63547/1‑149                                                                                                                                                       CAAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGACCCGCTTGCAGTTGTCCAGGCTGCGCATCAGGCTGCGCCCGCACAGCACGTTCAGCGGGTTGGTATGGGCGACGAAGGTGCGCACGTATTCGTCGGCC    >  8:99631/1‑149                                                                                                                                                        AAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGACCCGCTTGCAGTTGTCCAGGCTGCGCATCAGGCTGCGCCCGCACAGCACGTTCAGCGGGTTGGTATGGGCGACGAAGGTGCGCACGTATTCGTCGGCCG   >  6:38910/1‑149                                                                                                                                                        AAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGACCCGCTTGCAGTTGTCCAGGCTGCGCATCAGGCTGCGCCCGCACAGCACGTTCAGCGGGTTGGTATGGGCGACGAAGGTGCGCACGTATTCGTCGGCCG   >  6:43557/1‑149                                                                                                                                                         AGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGACCCGCTTGCAGTTGTCCAGGCTGCGCATCAGGCTGCGCCCGCACAGCACGTTCAGCGGGTTGGTATGGGCGACGAAGGTGCGCACGTATTCGTCGGCCGG  <  1:211778/149‑1                                                                                                                                                                                                                                                                                                               GCCCATACCAACCCGCTGAACGTGCTGTGCGGGCGCAGCCTGATGCGCAGCCTGGACAACTGCAAGCGGGTCAATGGCTCGGTGTGCCTGGACCCAGGTATCGATTCGTGGCTGGACCTTGGCGAAGGCGGCGCGCTCAAGCGTGCACGCCAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/353525‑353371 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccaaggTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGACCCGCTTGCAGTTGTCCAGGCTGCGCATCAGGCTGCGCCCGCACAGCACGTTCAGCGGGTTGGTATGGGCGACGAAGGTGCGCACGTATTCGTCGGCCGG  >  NC_002947/353410‑353555

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.