New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	663596 =	58 (1.170)	4 (0.080)	4/246	NT	6.8%	coding (462/4902 nt)	yfhM	lipoprotein
	?	NC_002947	663635 =	54 (1.140)					coding (501/4902 nt)	yfhM	lipoprotein

AGGAAGGTCGAGAGCATGTCTGGCTTGATGCGGAAGAACTCGACATCCACTTTGTCGACGTTCAGGGCAATCACCGGCAGGCCTTCGGCCAGGCGCGTAGGCAGCAAAGAGCCGCGGCTGGCAAAGCCGATGGTCGGCTGCATGTCGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/663745‑663596 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcggCTCTTTGCTGCCTACGCGCCTGGCCGAAGGCCTGCCGGTGATTGCCCTGAACGTCGACAAAGTGGATGTCGAGTTCTTCCGCATCAAGCCAGACATGCTCTCGACCTTCCTGGCCAACTGGGGACGCAACAGCAGCCTGTACTACTAC  >  NC_002947/663635‑663782                                                                                                                                                                                                                                                                                                            AGGAAGGTCGAGAGCATGTCTGGCTTGATGCGGAAGAACTCGACATCCACTTTGTCGACGTTCAGGGCAATCACCGGCAGGCCTTCGGCCAGGCGCGTAGGCAGCAAAGAGCCGCGGCTGGCAAAGCCGATGGTAGGCTGCATGTCGCG                                                                                                                                                       >  1:158127/1‑149  GGAAGGTCGAGAGCATGTCTGGCTTGATGCGGAAGAACTCGACATCCACTTTGTCGACGTTCAGGGCAATCACCGGCAGGCCTTCGGCCAGGCGCGTAGGCAGCAAAGAGCCGCGGCTGGCAAAGCCGATGGTCGGCTGCATGTCGCGG                                                                                                                                                      <  3:213715/149‑1   GAAGGTCGAGAGCATGTCTGGCTTGATGCGGAAGAACTCGACATCCACTTTGTCGACGTTCAGGGCAATCACCGGGAGGCCTTCGGCCAGGCGCGTAGGCATCAAAGAGCCGCGGCTGGCAAAGCCGATGGTCGGCTGCATGTCGCGG                                                                                                                                                      <  8:32687/148‑1                                                                                                               GCCGCGGCTGGCAAAGCCGATGGTCGGCTGCATGTCGCGGCTCTTTGCTGCCTACGCGCCTGGCCGAAGGCCTGCCGGTGATTGCCCTGAACGTCGACAAAGTGGATGTCGAGTTCTTCCGCATCAAGCCAGACATGCTCTCGACCTTC                                         >  3:223341/1‑149                                                                                                                CCGCGGCTGGCAAAGCCGATGGTCGGCTGCATGTCGCGGCTCTTTGCTGCCTACGCGCCTGGCCGAAGGCCTGCCGGTGATTGCCCTGAACGTCGACAAAGTGGATGTCGAGTTCTTCCGCATCAAGCCA                                                           <  5:220812/130‑1                                                                                                                CCGCGGCTGGCAAAGCCGATGGTCGGCTGCATGTCGCGGCTCTTTGCTGCCTACGCGCCTGGCCGAAGGCCTGCCGGTGATTGCCCTGAACGTCGACAAAGTGGATGTCGAGTTCTTCCGCATCAAGCCA                                                           >  6:220812/1‑130                                                                                                                  GCGGCTGGCAAAGCCGATGGTCGGCTGCATGTCGCGGCTCTTTGCTGCCTACGCGCCTGGCCGAAGGCCTGCCGGTGATTGCCCTGAACGTCGACAAAGTGGATGTCGAGTTCTTCCGCATCAAGCCAGACATGCTCTCGACCTTCCTG                                      >  5:216749/1‑149                                                                                                                                                   GCGGCTCTTTGCTGCCTACGCGCCTGGCCGAAGGCCTGCCGGTGATTGCCCTGAACGTCGACAAAGTGGATGTCGAGTTCTTCCGCATCAAGCCAGACATGCTCTCGACCTTCCTGGCCAACTGGGGACGCAACAGCAGCCTGTACTAC     >  6:237123/1‑149                                                                                                                                                      GCTCTTTGCTGCCTACGCGCCTGGCCGAAGGCCTGCCGGTGATTGCCCTGAACGTCGACAAAGTGGATGTCGAGTTCTTCCGCATCAAGCCAGACATGCTCTCGACCTTCCTGGCCAACTGGGGACGCAACAGCAGCCTGTACTACTAC  <  5:45477/149‑1                                                                                                                                                                                                                                                                                                            AGGAAGGTCGAGAGCATGTCTGGCTTGATGCGGAAGAACTCGACATCCACTTTGTCGACGTTCAGGGCAATCACCGGCAGGCCTTCGGCCAGGCGCGTAGGCAGCAAAGAGCCGCGGCTGGCAAAGCCGATGGTCGGCTGCATGTCGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/663745‑663596 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcggCTCTTTGCTGCCTACGCGCCTGGCCGAAGGCCTGCCGGTGATTGCCCTGAACGTCGACAAAGTGGATGTCGAGTTCTTCCGCATCAAGCCAGACATGCTCTCGACCTTCCTGGCCAACTGGGGACGCAACAGCAGCCTGTACTACTAC  >  NC_002947/663635‑663782

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.