New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 741643NA (NA)3 (0.060) 3/248 NT NA intergenic (+243/‑257) PP_t12/PP_0635 tRNA‑Thr/group II intron‑encoding maturase
?NC_002947 = 741675 NA (NA)intergenic (+275/‑225) PP_t12/PP_0635 tRNA‑Thr/group II intron‑encoding maturase

TTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCGGGTGACCGCGAATCTGAAGGAAGCCCGAGGCAAAATGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/741492‑741643
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgTGCCGCCTCTATCCGCTTCCTGTTCGTCAGGCCAGCATTTTGC  <  NC_002947/741675‑741633
                                                                                                                                                                                                   
TTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGATGCAAGGGTGGCGCGGGTGACCGCGAATCTGAAGGAAGCCCGAGGCAAAATG                                                <  6:185982/149‑1
   CGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCGGGTGACCGCGAATCTGAAGGAAGCCCGAGGCAAAATGCTG                                             <  8:68409/149‑1
   CGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCGGGTGACCGCGAATCTGAAGGAAGCCCGAGGCAAAATGCTG                                             <  3:77021/149‑1
   CGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCGGGTGACCGCGAATCTGAAGGAAGCCCGAGGCAAAATGCT                                              <  2:211271/148‑1
   CGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCGGGTGACCGCGAATCTGAAGGAAGCCCGAGGCAAAATGCT                                              >  6:238791/1‑148
   CGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACGTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCGGGTGACCGCGAATCTGAAGGAAGCCCGAGGCAAAATGCTG                                             <  8:270617/149‑1
   CGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGCGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCGGGTGACCGCGAATCTGAAGGAAGCCCGAGGCAAAATGCT                                              <  5:238791/148‑1
          GCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCGGGTGACCGCGAATCTGAAGGAAGCCCGAGGCAAAATGCTG                                             >  2:103159/1‑142
          GCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCGGGTGACCGCGAATCTGAAGGAAGCCCGAGGCAAAATGCTG                                             <  1:103159/142‑1
           CGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCGGGTGACCGCGAATCTGAAGGAAGCCCGAGGCAAAATGCT                                              >  5:101878/1‑140
           CGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCGGGTGACCGCGAATCTGAAGGAAGCCCGAGGCAAAATGCT                                              <  6:101878/140‑1
                                          GTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCGGGTGACCGCGAATCTGAAGGAAGCCCGAGGCAAAATGCTG                                             >  4:49845/1‑110
                                          GTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCGGGTGACCGCGAATCTGAAGGAAGCCCGAGGCAAAATGCTG                                             <  3:49845/110‑1
                                             ACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCGGGTGACCGCGAATCTGAAGGAAGCCCGAGGCAAAATGCTGTGCCGCCTCTATCCGCTTCCTGTTCGTCAGGCCAGCATTTT    <  8:71328/148‑1
                                                              CTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCGGGTGACCGCGAATCTGAAGGAAGCCCGAGGCAAAATGCT                                              <  7:109519/89‑1
                                                              CTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCGGGTGACCGCGAATCTGAAGGAAGCCCGAGGCAAAATGCT                                              >  8:109519/1‑89
                                                                                   AAGTGTTAGCCGGAGGCAAGGGTGTCGCGGGTGACCGCGAATCTGAAGGAAGCCCGAGGCAAAATGCTGTGCCGCCTCTATCCGCTTCCTGTTCGTCAGGCCAGCATTTTGC  >  4:38478/1‑112
                                                                                   AAGTGTTAGCCGGAGGCAAGGGTGTCGCGGGTGACCGCGAATCTGAAGGAAGCCCGAGGCAAAATGCTGTGCCGCCTCTATCCGCTTCCTGTTCGTCAGGCCAGCATTTTGC  <  3:38478/112‑1
                                                                                                                                                                                                   
TTGCGCGTAAGCGCAACCCGCTTGGTTGTGGTGGCCAAGTGGGTGACTTGGAGGTGAAAGTCCTCTACACACCCGGCAAGGGGAAGTGTTAGCCGGAGGCAAGGGTGTCGCGGGTGACCGCGAATCTGAAGGAAGCCCGAGGCAAAATGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/741492‑741643
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgTGCCGCCTCTATCCGCTTCCTGTTCGTCAGGCCAGCATTTTGC  <  NC_002947/741675‑741633

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.