New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	742915 =	NA (NA)	6 (0.130)	5/244	NT	NA	coding (1016/1422 nt)	PP_0635	group II intron‑encoding maturase
	?	NC_002947	742945 =	NA (NA)					coding (1046/1422 nt)	PP_0635	group II intron‑encoding maturase

AGTTCCTCAAGCGGCCGCTTGCTCTGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/743068‑742915 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctcaGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGGGCTAGCTACTTCAAGCTCAGCCAGAGCAAGCGGCCGCTTGAGGAACTGGATGGTTGGGTCAGGCACAAACT  >  NC_002947/742945‑743092                                                                                                                                                                                                                                                                                                                AGTTCCTCAAGCGGCCGCTTGCTCTGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAG                                                                                                                                                           >  3:73915/1‑149  GTTCCTCAAGCGGCCGCTTGCTCTGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCGTTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGG                                                                                                                                                          <  1:173407/149‑1  GTTCCTCAAGCGGCCGCTTGCTCTGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGG                                                                                                                                                          <  1:73270/149‑1  GTTCCTCAAGCGGCCGCTTGCTCTGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGG                                                                                                                                                          <  6:247611/149‑1   TTCCTCAAGCGGCCGCTTGCTCTGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGC                                                                                                                                                         <  3:197514/149‑1   TTCCTCAAGCGGCCGCTTGCTCTGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGC                                                                                                                                                         <  7:247514/149‑1     CCTCAAGCGGCCGCTTGCTCTGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCT                                                                                                                                                        <  5:80903/148‑1      CTCAAGCGGCCGCTTGCTCTGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCA                                                                                                                                                      >  2:312947/1‑149      CTCAAGCGGCCGCTTGCTCTGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCA                                                                                                                                                      >  5:313998/1‑149      CTCAAGCGGCCGCTTGCTCTGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCA                                                                                                                                                      >  7:35532/1‑149      CTCAAGCGGCCGCTTGCTCTGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCA                                                                                                                                                      >  4:172460/1‑149      CTCAAGCGGCCGCTTGCTCTGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCA                                                                                                                                                      >  7:284437/1‑149      CTCAAGCGGCCGCTTGCTCTGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTC                                                                                                                                                       <  4:39859/148‑1       TCAAGCGGCCGCTTGCTCTGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGC                                                                                                                                                         <  8:44587/145‑1       TCAAGCGGCCGCTTGCTCTGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGC                                                                                                                                                         >  7:44587/1‑145          AGCGGCCGCTTGCTCTGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCA                                                                                                                                                      >  4:118869/1‑145          AGCGGCCGCTTGCTCTGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCA                                                                                                                                                      <  3:118869/145‑1                       TCTGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGC                                                                                                                                                         >  6:187035/1‑129                       TCTGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGC                                                                                                                                                         <  5:187035/129‑1                           GCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTC                                                                                                                                                       <  4:128279/127‑1                           GCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTC                                                                                                                                                       >  3:128279/1‑127                                            TAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTC                                                                                                                                                       <  7:44964/110‑1                                            TAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTC                                                                                                                                                       >  8:44964/1‑110                                                                          GCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGC                                                                                                                                                         <  6:71649/78‑1                                                                          GCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGC                                                                                                                                                         >  5:71649/1‑78                                                                                                                       GCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGGGCTAGCTACTTCAAGCTCAGCCAGAGCAAGCGGCCG                                     >  1:227735/1‑149                                                                                                                         ATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGGGCTAGCTACTTCTAGCTCAGCCAGAGCAAGCGGCCGCT                                   >  5:302643/1‑149                                                                                                                         ATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGGGCTAGCTACTTC                                                             >  7:30578/1‑123                                                                                                                         ATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGGGCTAGCTACTTC                                                             <  8:30578/123‑1                                                                                                                          TTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGGGGTAGCTACTTCAAGCTCAGCCAGAGCAAGCGGCCGCTT                                  >  6:163351/1‑149                                                                                                                                       GCGTAAGCGGTCTAGGCTCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGGGATAGCTACTTCAAGCTCAGCCAGAGCAAGCGGCCGCTTGAGGAACTGGATG                     <  5:163351/149‑1                                                                                                                                                     GGCTCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGGGCTAGCTACTTCAAGCTCAGCCAGAGCAAGCGGCCGCTTGAGGAACTGGATGGTTGGGTCAGGCAC       <  4:124763/149‑1                                                                                                                                                     GGCTCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGGGCTAGCTACTTCAAGCTCAGCCAGAGCAAGCGGCCCCTTGAGGAACTGGATGGTTGGGTCAGGCA        >  4:235844/1‑148                                                                                                                                                      GCTCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGGGCTAGCTACTTCAAGCTCAGCCAGAGCAAGCGGCCGCTTGAGGAACTGGATGGTTGGGTCAGGCAC       >  3:22875/1‑148                                                                                                                                                      GCTCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGGGCTAGCTACTTCAAGCTCAGCCAGAGCAAGCGGCCGCTTGAGGAACTGGATGGTTGGGTCAGGCAC       >  3:138940/1‑148                                                                                                                                                       CTCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGGGCTAGCTACTTCAAGCTCAGCCAGAGCAAGCGGCCGCTTGAGGAACTGGATGGTTGGGTCAGGCACA      >  7:291454/1‑148                                                                                                                                                        TCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGGGCTAGCTACTTCAAGCTCAGCCAGAGCAAGCGGCCGCTTGAGGAACTGGATGGTTGGGTC             >  4:134371/1‑140                                                                                                                                                        TCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGGGCTAGCTACTTCAAGCTCAGCCAGAGCAAGCGGCCGCTTGAGGAACTGGATGGTTGGGTC             <  3:134371/140‑1                                                                                                                                                        TCAGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGA                                                                               >  3:88800/1‑74                                                                                                                                                          AGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGGGCTAGCTACTTCAAGCTCAGCCAGAGCAAGCGGCCGCTTGAGGAACTGGATGGTTGGGTCAGGCACAAACT  >  3:47908/1‑149                                                                                                                                                          AGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGGGCTAGCTACTTCAAGCTCAGCCAGAGCAAGCGGCCGCTTGAGGAACTGGATGGTTGGGTCAGGCACAAAC   >  6:151302/1‑148                                                                                                                                                          AGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGGGCTAGCTACTTCAAGCTCAGCCAGAGCAAGCGGCCGCTTGAGGAACTGGATGGTTGGGTCAGGCACAAAC   <  5:151302/148‑1                                                                                                                                                                                                                                                                                                                AGTTCCTCAAGCGGCCGCTTGCTCTGGCTGAGCTTGAAGTAGCTAGCCCAGCCTCTCAGGACGGGGTTGATCCGCTCGATGACAGTCGCCATTTTGCGAGCCCGTACGCTGCGCAGCAGCATTCTGAGCCGGTCGCGTAAGCGGTCTAGGCTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/743068‑742915 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctcaGAATGCTGCTGCGCAGCGTACGGGCTCGCAAAATGGCGACTGTCATCGAGCGGATCAACCCCGTCCTGAGAGGCTGGGCTAGCTACTTCAAGCTCAGCCAGAGCAAGCGGCCGCTTGAGGAACTGGATGGTTGGGTCAGGCACAAACT  >  NC_002947/742945‑743092

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.