New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	975171 =	43 (0.870)	3 (0.070)	3/216	NT	9.6%	intergenic (+20/+149)	ycfJ/suhB	flagella biosyntheis regulator/bifunctional inositol monophosphatase/glycerol‑2‑phosphatase
	?	NC_002947	975243 =	20 (0.480)					intergenic (+92/+77)	ycfJ/suhB	flagella biosyntheis regulator/bifunctional inositol monophosphatase/glycerol‑2‑phosphatase

AAGCATGAAGCGCTAAGCGCAGATTGCCGGCAAACAAAAAGCACCTCTTGAGGTGCTTTTTTGTGCCTGGTGGTTTTGCGTGGCCTGTACCGACCTCTTCGCGGGTAAACCCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCGGGTTTACCCGCGAAGAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/975335‑975171 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggtttacccgcgaagaggTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGC  >  NC_002947/975243‑975390                                                                                                                                                                                                                                                                                                                           AAGCATGAAGCGCTAAGCGCAGATTGCCGGCAAACAAAAAGCACCTCTTGAGGTGCTTTTTTGTGCCTGGTGGTTTTGCGTGGCCTGTACCGACCTCTTCGCGGGTAAACCCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCGGG                                                                                                                                                                      >  2:211253/1‑149        AAGCGCTAAGCGCAGATTGCCGGCAAACAAAAAGCACCTCTTGAGGTGCTTTTTTGTGCCTGGTGGTTTTGCGTGGCCTGTACCGACCTCTTCGCGGGTAAACCCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCGGGTTTACC                                                                                                                                                                <  8:136254/148‑1                AGCGCAGATTGCCGGCAAACAAAAAGCACCTCTTGAGGTGCTTTTTTGTGCCTGGTGGTTTTGCGTGGCCTGTACCGACCTCTTCGC‑GGTAAACCCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCGGGTTTACCCGCGAAGAGG                                                                                                                                                      >  7:201783/1‑149                 GCGCAGATTGCCGGCAAACAAAAAGCACCTCTTGAGGTGCTTTTTTGTGCCTGGTGGTTTTGCGTGGCCTGTACCGACCTCTTCGCGGGTAAACCCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCGGGTTTACCCGCGAAGAGG                                                                                                                                                      >  3:200030/1‑149                              GCAAACAAAAAGCACCTCTTGAGGTGCTTTTTTGTGCCTGGTGGTTTTGCGTGGCCTGTACCGACCTCTTCGCGGGTAAACCCGCTCCTACATGGATCGCCTTGCCCCGGTAGGATCGGGGTTACCCGCGAAGA                                                                                                                                                        >  6:324811/1‑134                              GCAAACAAAAAGCACCTCTTGAGGTGCTTTTTTGTGCCTGGTGGTTTTGCGTGGCCTGTACCGACCTCTTCGCGGGTAAACCCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCGGGTTTACCCGCGAAGA                                                                                                                                                        <  5:324811/134‑1                                                                                                        GGTAAACCCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTT                                                                >  6:33777/1‑148                                                                                                              CCCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTG                                                                                           >  7:154948/1‑115                                                                                                              CCCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCGGGTTTACCCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTG                                                                                           <  8:154948/115‑1                                                                                                                                                           CCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGGAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCAC            >  7:227124/1‑149                                                                                                                                                           CCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGC                                                   >  1:154213/1‑110                                                                                                                                                           CCGCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGC                                                   <  2:154213/110‑1                                                                                                                                                             GCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGAT                                     >  7:208566/1‑122                                                                                                                                                             GCGAAGAGGTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGAT                                     <  8:208566/122‑1                                                                                                                                                                     GTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGC  <  8:167135/149‑1                                                                                                                                                                                                                                                                                                                           AAGCATGAAGCGCTAAGCGCAGATTGCCGGCAAACAAAAAGCACCTCTTGAGGTGCTTTTTTGTGCCTGGTGGTTTTGCGTGGCCTGTACCGACCTCTTCGCGGGTAAACCCGCTCCTACATGGATCGCATTGCCCCTGTAGGATCGGGTTTACCCGCGAAGAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/975335‑975171 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggtttacccgcgaagaggTCGGTACAGGCCACGCAAAACCACCAGGCACAAAAAAGCACCTCAAGAGGTGCTTTTTGTTTGCCGGCAATCTGCGCTTAGCGCTTCATGCTTTCTGGCAGGTGCGGCTGGATGGCAGTCAGTACCGCCTTGAAGCACTTGATGTTGC  >  NC_002947/975243‑975390

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.