New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1681194 =	69 (1.400)	4 (0.080)	4/246	NT	5.8%	coding (264/543 nt)	PP_1476	hypothetical protein
	?	NC_002947	1681256 =	63 (1.330)					coding (326/543 nt)	PP_1476	hypothetical protein

TCCCACACTCGCAGGCTGCCGTAAGCCAGCAAGCTGGTGCGTTCGGTACGGCGCGAGCACCAGGTCAGGCGATCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1681271‑1681194 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcaGCCTGCGAGTGTGGGAGGGTAAAGTGGTGAGCGCGGTCAAGAACCTGAAAAACCTGAGCATTGCCGCTGTGCCGCAAGAGGTGCTGGAAACCCTGGCGACCGACATGCCGCGTAGCATCAAGTGGGACGTGA  >  NC_002947/1681256‑1681387                                                                                                                                                                                                                    TCCCACACTCGCAGGCTGCCGTAAGCCAGCAAGCTGGTGCGTTCGGTACGGCGCGAGCACCAGGTCAGGCGATCGGCAGCCTGCGAGTGTGGGAGGGTAAAGTGGTGAGCGCGGTCAAGAACCTGAAAAACCTGAGCATTGCCGCTGTG                                                               >  4:278040/1‑149                  GCCGTAAGCCAGCAAGCTGGTGCGTTCGGTACGGCGCGAGCACCAGGTCAGGCGATCGGCAGCCTGCGAGTGTGGGAGGGTAAAGTGGTGAGCGCGGTCAAGAACCTGAAAAACCTGAGCATTGCCGCTGTGCCGCAAGAGGTGCTGG                                               >  4:177896/1‑148                    CGTAAGCCAGCAAGCTGGTGCGTTCGGTACGGCGCGAGCACCAGGTCAGGCGATCGGCAGCCTGCGAGTGTGGGAGGGTAAAGTGGTGAGCGCGGTCAAGAACCTGAAAAACCTGAGCATTGCCGCTGTGCCGCAAGAGGTGCTGGAAA                                            <  3:177896/149‑1                                                              AGGTCAGGCGATCGGCAGCCTGCGAGTGTGGGAGGGTAAAGTGGTGAGCGCGGTCAAGAACCTGAAAAACCTGAGCATTGCCGCTGTGCCGCAAGAGGTGCTGGAAACCCTGGCGACCGACATGCCGCGTAGCATCAAGTGGGACGTGA  <  3:278040/149‑1                                                                                                                                                                                                                    TCCCACACTCGCAGGCTGCCGTAAGCCAGCAAGCTGGTGCGTTCGGTACGGCGCGAGCACCAGGTCAGGCGATCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1681271‑1681194 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcaGCCTGCGAGTGTGGGAGGGTAAAGTGGTGAGCGCGGTCAAGAACCTGAAAAACCTGAGCATTGCCGCTGTGCCGCAAGAGGTGCTGGAAACCCTGGCGACCGACATGCCGCGTAGCATCAAGTGGGACGTGA  >  NC_002947/1681256‑1681387

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.