| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1697824 = | 49 (0.990) | 4 (0.090) | 3/242 | NT | 7.7% | coding (1857/2289 nt) | PP_1492 | two‑component system sensor histidine kinase/response regulator |
| ? | NC_002947 | 1697871 = | 49 (1.050) | coding (1904/2289 nt) | PP_1492 | two‑component system sensor histidine kinase/response regulator | |||||
CACCGCCACCGCCACGTCGTAGCCACGGTTGCCCAGCAGCTTGCGCTGCAGTTCGCGTACGGTCAGCGAGTCGTCGACCACCAGGATGCGTTTGCGGACTACGCCACGGGCTCCGCTGCTGCCGCGCTCGATGCGCTCCAGGCTGCCCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1697974‑1697824‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgtgGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACGTGGCGGTGGCGGTGGATGGCATGGACGGCTGGAACGCCCTGCGCAGTGAGGACTTC > NC_002947/1697871‑1698016 CACCGCCACCGCCTCGTCGTAGCGACGGTTGCCCTGCAGCTTGCGCTGCAGTTCGCGTACGGTCAGCGAGGCGGCGACCACCAGCATGCGTTTGCGGACTACGCGACGGGCTCCGCTGCTGCGGCGCTCTATGCGCTCCAGGCTGCCC < 3:93212/148‑1 ACGGTCAGCGAGTCGTCGACCACCAGGATGCGTTTGCGGACTACGCCACGGGCTCCGCTGCTGCCGCGCTCGATGCGCTCCAGGCTGCCCGTG > 5:102824/1‑93 ACGGTCAGCGAGTCGTCGACCACCAGGATGCGTTTGCGGACTACGCCACGGGCTCCGCTGCTGCCGCGCTCGATGCGCTCCAGGCTGCCCGTG < 6:102824/93‑1 CACGGGCTCCGCTGCTGCCGCGCTCGATGCGCTCCAGGCTGCCCGTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACGTGGCGGTGGCGG > 2:200499/1‑149 CACGGGCTCCGCTGCTGCCGCGCTCGATGCGCTCCAGGCTGCCCGTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACGTGGCGGTGGCGG > 7:24984/1‑149 ACGGGCTCCGCTGCTGCCGCGCTCGATGCGCTCCAGGCTGCCCGTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACGTGGCGGTGGCGGT < 1:200499/149‑1 CTCCGCTGCTGCCGCGCTCGATGCGCTCCAGGCTGCCCGTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACGTGGCGGTGGCGGTGGATG < 8:24984/149‑1 CCGTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACGTGGCGGTGGCGGTGGATGGCATGGACGGCTGGAACGCCCTGCGCAGTGATGAC < 5:105826/148‑1 GTGGCGTAGTCCTCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACGTGGCGGTGGCGGTGGATGGCATGGACGGCTGGAACGCCCTGCGCAGTGAGGACTTC < 6:29074/149‑1 GTGGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACGTGGCGGTGGCGGTGGATGGCATGGACGGCTGGAACGCCCTGCGCAGTGAGGACTTC < 5:72477/149‑1 CACCGCCACCGCCACGTCGTAGCCACGGTTGCCCAGCAGCTTGCGCTGCAGTTCGCGTACGGTCAGCGAGTCGTCGACCACCAGGATGCGTTTGCGGACTACGCCACGGGCTCCGCTGCTGCCGCGCTCGATGCGCTCCAGGCTGCCCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1697974‑1697824‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgtgGCGTAGTCCGCAAACGCATCCTGGTGGTCGACGACTCGCTGACCGTACGCGAACTGCAGCGCAAGCTGCTGGGCAACCGTGGCTACGACGTGGCGGTGGCGGTGGATGGCATGGACGGCTGGAACGCCCTGCGCAGTGAGGACTTC > NC_002947/1697871‑1698016 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |