New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1750462	55 (1.110)	4 (0.080)	4/246	NT	6.7%	coding (139/177 nt)	PP_1550	Cro/CI family transcriptional regulator
	?	NC_002947	= 1750500	59 (1.240)					coding (177/177 nt)	PP_1550	Cro/CI family transcriptional regulator

GAGGAGGTCGCCATGACCAAGAGCCAGGCAATCCAACATTTCGGGTCTATTTCAGCCCTGGCGAAGGCGCTAGGGGTGACCTATGAGGCCGTCCGCCAATGGGCGGATGTTCCTGAGCTTCGCCAGTACCAAATCGAGCGTTTGACCAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1750312‑1750462 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaggTCACGCAGCGGCATCCCTTTTCCCTGCCTTCAGCGCGCCCTTGGTCAAACGCTCGATTTGGTACTGGCGAAGCTCAGGAACATCCGCCCATTGGCGGACGGCCTCATAGGTCACCCCTAGCGCCTTCGCCAGGGCTGAAATAGACCC  <  NC_002947/1750500‑1750354                                                                                                                                                                                                                                                                                                            GAGGAGGTCGCCATGACCAAGAGCCAGGCAATCCAACATTTCGGGTCTATTTCAGCCCTGGCGAAGGCGCTAGGGGTGACCTATGAGGCCGTCCGCCAATGGGCGGATGTTCCTGAGCTTCGCCAGTACCAAATCGAGCGTTTGACC                                                                                                                                                         >  2:16723/1‑147  AGGAGGTCGCCATGACCAAGAGCCAGGCAATCCAACATTTCGGGTCTATTTCAGCCCTGGCGAAGGCGCTAGGGGTGACCTATGAGGCCGTCCGCCAATGGGCGGATGTTCCTGAGCTTCGCCAGTACCAAATCGAGCGTTTGACCAAG                                                                                                                                                      >  2:27469/1‑149                                TCCAACATTTCGGGTCTATTTCAGCCCTGGCGAAGGCGCTAGGGGTGACCTATGAGGCCGTCCGCCAATGGGCGGATGTTCCTGAGCTTCGCCAGTACCAAATCGAGCGTTTGACCAAGGTCACGCAGCGGCATCCCTTTTCCCTGCCT                                                                                                                        >  4:7421/1‑149                                             GTCTATTTCAGCCCTGGCGAAGGCGCTAGGGGTGACCTATGAGGCCGTCCGCCAATGGGCGGATGTTCCTGAGCTTCGCCAGTACCAAATCGAGCGTTTGACCAAGGTCACGCAGCGGCATCCCTTTTCCCTGCCTTCAGCGCGCCCTT                                                                                                           <  3:7421/149‑1                                                        CCCTGGCGAAGGCGCTAGGGGTGACCTATGAGGCCGTCCGCCAATGGGCGGATGTTCCTGAGCTTCGCCAGTACCAAATCGAGCGTTTGACCAAGGTCACGCAGCGGCATCCCTTTTCCCTGCCTTCAGCGCGCCCTTGG                                                                                                         <  3:201790/140‑1                                                        CCCTGGCGAAGGCGCTAGGGGTGACCTATGAGGCCGTCCGCCAATGGGCGGATGTTCCTGAGCTTCGCCAGTACCAAATCGAGCGTTTGACCAAGGTCACGCAGCGGCATCCCTTTTCCCTGCCTTCAGCGCGCCCTTGG                                                                                                         >  4:201790/1‑140                                                                                                                                                   CAAGGTCACGCAGCGGCATCCCTTTTCCCTGCCTTCAGCGCGCCCTTGGTCAAACGCTCGATTTGGTACTGGCGAAGCTCAGGAACATCCGCCCATTGGCGGACGGCCTCATAGGTCACCCCTAGCGCCTTCGCCAGGGCTGAAATAGA     >  2:179363/1‑149                                                                                                                                                   CAAGGTCACGCAGCGGCATCCCTTTTCCCTGCCTTCAGCGCGCCCTTGGTCAAACGCTCGATTTGGTACTGGCGAAGCTCAGGAACATCCGCCCATTGGCGGACGGCCTCATAGGTCACCCCTAGCGCCTTCGCCAGGGCTGAAATA       <  5:143980/147‑1                                                                                                                                                   CAAGGTCACGCAGCGGCATCCCTTTTCCCTGCCTTCAGCGCGCCCTTGGTCAAACGCTCGATTTGGTACTGGCGAAGCTCAGGAACATCCGCCCATTGGCGGACGGCCTCATAGGTCACCCCTAGCGCCTTCGCCAGGGCTGAAATA       <  7:82650/147‑1                                                                                                                                                    AAGGTCACGCAGCGGCATCCCTTTTCCCTGCCTTCAGCGCGCCCTTGGTCAAACGCTCGATTTGGTACTGGCGAAGCTCAGGAACATCCGCCCATTGGCGGACGGCCTCATAGGTCACCCCTAGCGCCTTCGCCAGGGCTGAAATAGcc    >  7:96093/1‑147                                                                                                                                                      GGTCACGCAGCGGCATCCCTTTTCCCTGCCTTCAGCGCGCCCTTGGTCAAACGCTCGATTTGGTACTGGCGAAGCTCAGGAACATCCGCCCATTGGCGGACGGCCTCATAGGTCACCCCTAGCGCCTTCGCCAGGGCTGAAATAGACCC  >  1:16723/1‑149                                                                                                                                                      GGTCACGCAGCGGCATCCCTTTTCCCTGCCTTCAGCGCGCCCTTGGTCAAACGCTCGATTTGGTACTGGCGAAGCTCAGGAACATCCGCCCATTGGCGGACGGCCTCATAGGTCACCCCTAGCGCCTTCGCCAGGGCTGAAATAGACCC  <  5:224440/149‑1                                                                                                                                                                                                                                                                                                            GAGGAGGTCGCCATGACCAAGAGCCAGGCAATCCAACATTTCGGGTCTATTTCAGCCCTGGCGAAGGCGCTAGGGGTGACCTATGAGGCCGTCCGCCAATGGGCGGATGTTCCTGAGCTTCGCCAGTACCAAATCGAGCGTTTGACCAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1750312‑1750462 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaggTCACGCAGCGGCATCCCTTTTCCCTGCCTTCAGCGCGCCCTTGGTCAAACGCTCGATTTGGTACTGGCGAAGCTCAGGAACATCCGCCCATTGGCGGACGGCCTCATAGGTCACCCCTAGCGCCTTCGCCAGGGCTGAAATAGACCC  <  NC_002947/1750500‑1750354

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.