New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2547980 =	35 (0.710)	4 (0.090)	4/242	NT	10.7%	coding (222/888 nt)	rhtA	threonine/homoserine exporter
	?	NC_002947	2548026 =	34 (0.730)					coding (176/888 nt)	rhtA	threonine/homoserine exporter

TCGATTCAGTCCGGCGCCTCCCTGGCCAAAAGCATGTTCCCGATCGTCGGCGCACAAGGCACTACCACCCTGCGCCTGATCTTCGCCAGCATCATCATGCTGCTTATATTGCGCCCGTGGCGGGTACGCATGACCGCCAACACGTTGCGCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2548132‑2547980 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcaatATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGACTGAATCGATGCCATGGCGATAAGCAGTAGGCCGATCGGGAAGAGG  >  NC_002947/2548026‑2548169                                                                                                                                                                                                                                                                                                           TCGATTCAGTCCGGCGCCTCCCTGGCCAAAAGCATGTTCCCGATCGTCGGCGCACAAGGCACTACCACCCTGCGCCTGATCTTCGCCAGCATCATCATGCTGCTTATATTGCGCCCGTGGCGGGTACGCATGACCGCCAACACGTTGCG                                                                                                                                                      >  5:313113/1‑149   GATTCAGTCCGGCGCCTCCCTGGCCAAAAGCATGTTCCCGATCGTCGGCGCACAAGGCACTACCACCCTGCGCCTGATCTTCGCCAGCATCATCATGCTGCTTATATTGCGCCCGTGGCGGGTACGCATGACCGCCAACACGTTGCGC                                                                                                                                                     <  7:81999/148‑1    ATTCAGTACGGCGCCTCCCTGGCCAAAAGCATGTTCCCGATCGTCGGCGCACAAGGCACTACGACCCTGCGCCTGATCTTCGCCAGCATCATGATGCTGCTTATATTGCGCCCGTGGCGGGTACGCATGACCGCCAACACGTTGCGCAA                                                                                                                                                   <  8:289742/149‑1                                                                                                     TGCTTATATTGCGCCCGTGGCGGGTACGCATGCCCGCCAACACGTTGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGACCATGCTTTTGGCCAGGGAGGCGCCG                                                  >  3:18853/1‑149                                                                                                       CTTATATTGCGCCCGTGGCGGGTACGCATGACCGCCAACACGTTGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCgg                                                  >  3:107769/1‑145                                                                                                        TTATATTGCGCCCGTGGCGGGTACGCATGACCGCCAACACGTTGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGAC                                               >  6:273591/1‑149                                                                                                           TATTGCGCCCGTGGCGGGTACGCATGACCGCCAACACGTTGCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCTGGACTG                                             >  8:158206/1‑148                                                                                                                                                   GCGCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGACTGAATCGATGCCATGGCGATAAGCAGTAGGCCGATCGGGAAGA    <  3:149232/149‑1                                                                                                                                                     GCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGACTGAATCGATGCCATGGCGATAAGCAGTAGGCCGCTCGGGAAGAGG  >  4:202908/1‑149                                                                                                                                                     GCAATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGACTGAATCGATGCCATGGCGATAAGCAGTAGGCCGATCGGGAAGAGG  <  8:3708/149‑1                                                                                                                                                        ATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGACTGAATCGATGCCATGGCGATAAGCAGTAGGCCGATCGGGAAGAGG  >  3:165692/1‑146                                                                                                                                                        ATATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGACTGAATCGATGCCATGGCGATAAGCAGTAGGCCGATCGGGAAGAGG  <  4:165692/146‑1                                                                                                                                                         TATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGACTGAATCGATGCCATGGCGATAAGCAG                     <  1:189902/126‑1                                                                                                                                                         TATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGACTGAATCGATGCCATGGCGATAAGCAG                     >  2:189902/1‑126                                                                                                                                                                                                                                                                                                           TCGATTCAGTCCGGCGCCTCCCTGGCCAAAAGCATGTTCCCGATCGTCGGCGCACAAGGCACTACCACCCTGCGCCTGATCTTCGCCAGCATCATCATGCTGCTTATATTGCGCCCGTGGCGGGTACGCATGACCGCCAACACGTTGCGCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2548132‑2547980 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcaatATAAGCAGCATGATGATGCTGGCGAAGATCAGGCGCAGGGTGGTAGTGCCTTGTGCGCCGACGATCGGGAACATGCTTTTGGCCAGGGAGGCGCCGGACTGAATCGATGCCATGGCGATAAGCAGTAGGCCGATCGGGAAGAGG  >  NC_002947/2548026‑2548169

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.