| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3214581 = | 68 (1.380) | 4 (0.090) | 3/242 | NT | 5.9% | coding (496/3129 nt) | mexD | multidrug RND transporter MexD |
| ? | NC_002947 | 3214620 = | 63 (1.350) | coding (535/3129 nt) | mexD | multidrug RND transporter MexD | |||||
CGAAGAACTGCAGCTTGCCCACGCCGGGCACGCGCAGCAGTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3214623‑3214581‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagttcTTCGCCTCGGAAGCGGCCATGCGGGTCTGGGTGGATCCGCAGAAGCTGGTGGGCTATGGCCTGTCCATCGACGACATCAACTCGGCCATTCGCGGCCAGAACGTCCAGGTACCGGCCGGCAGCTTCGGCAGCACGCCCGGT > NC_002947/3214620‑3214760 CGAAGAACTGCAGCTTGCCCACGCCGGGCACGCGCAGCAGTTCTTCGCCTCGGAAGCGGCCATGCGGGTCTGGGTGGATCCGCAGAAGCTGGTGGGCTATGGCCTGTCCATCGACGACATCAACTCGGCCATTCGCGGCCAGAACGTC > 7:73137/1‑148CGAAGAACTGCAGCTTGCCCACGCCGGGCACGCGCAGCAGTTCTTCGCCTCGGAAGCGGCCATGCGGGTCTGGGTGGATCCGCAGAAGCTGGTGGGCTATGGCCTGTCCATCGACGACATCAACTCGGCCATTCGCGGCCAGAACGTC < 8:73137/148‑1 GAAGAACTGCAGCTTGCCCACGCCGGGCACGCGCAGCAGTTCTTCGCCTCGGAAGCGGCCATGCGGGTCTGGGTGGATCCGCAGAAGCTGGTGGGCTATGGCCTGTCCATCGACGACATCAACTCGGCCATTCGCGGCCAGAACGTC > 6:214871/1‑147 GAAGAACTGCAGCTTGCCCACGCCGGGCA‑‑CGCTGCAGTTCTTCGCCTCGGAAGCGGCCATGCGGGTCTGGGTGGATCCGCAGAAGCTGGTGGGCTATGGCCTGTCCATCGACGACATCAACTCGGCCATTCGCGGCCAGAACGTCCAGG > 6:315272/1‑149 GCAGTTCTTCGCCTCGGAAGCGGCCATGCGGGTCTGGGTGGATCCGCAGAAGCTGGTGGGCTATGG > 1:213530/1‑66 GCAGTTCTTCGCCTCGGAAGCGGCCATGCGGGTCTGGGTGGATCCGCAGAAGCTGGTGGGCTATGG < 2:213530/66‑1 CAGTTCTTCGCCTCGGAAGCGGCCATGCGGGTCTGGGTGGATCCGCAGAAGCTGGTGGGCTATGGCCTGTCCATCGACGACATCAACTCGGCCATTCGCGGCCAGAACGTCCAGGTACCGGCCGGCAGCTTCGGCAGCACGCCCGGT < 7:286946/147‑1 TTCTTCGCCTCGGAAGCGGCCATGCGGGTCTGGGTGGATCCGCAGAAGCTGGTGGGCTATGGCCTGTCCATCGACGACATCAACTCGGCCATTCGCGGCCAGAACGTCCAG > 1:265035/1‑111 TTCTTCGCCTCGGAAGCGGCCATGCGGGTCTGGGTGGATCCGCAGAAGCTGGTGGGCTATGGCCTGTCCATCGACGACATCAACTCGGCCATTCGCGGCCAGAACGTCCAG < 2:265035/111‑1 CGAAGAACTGCAGCTTGCCCACGCCGGGCACGCGCAGCAGTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3214623‑3214581‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagttcTTCGCCTCGGAAGCGGCCATGCGGGTCTGGGTGGATCCGCAGAAGCTGGTGGGCTATGGCCTGTCCATCGACGACATCAACTCGGCCATTCGCGGCCAGAACGTCCAGGTACCGGCCGGCAGCTTCGGCAGCACGCCCGGT > NC_002947/3214620‑3214760 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |