New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3282789 =	47 (0.950)	5 (0.110)	5/240	NT	10.0%	coding (125/546 nt)	PP_2884	XRE family transcriptional regulator
	?	NC_002947	3282839 =	46 (0.990)					coding (75/546 nt)	PP_2884	XRE family transcriptional regulator

TTGACACCTCTGATTACAAGGCGGCTATGGACACGGGGACGCGACTCAAACTGGTGCGTGAACGCAACAACCTCTCCCAACGGGAACTGGCCCGTCGCAGCGGGCTGACCAATTCGACGATCTCGCAGATCGAGCAGAATCGCGTCAGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3282939‑3282789 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcagcccGCTGCGACGGGCCAGTTCCCGTTGGGAGAGGTTGTTGCGTTCACGCACCAGTTTGAGTCGCGTCCCCGTGTCCATAGCCGCCTTGTAATCAGAGGTGTCAATAATAATGAGCGATGCGCATTAAAACACACTCTGCGCCCTTGCGCGC  >  NC_002947/3282839‑3282986                                                                                                                                                                                                                                                                                                             TTGACACCTCTGATTACAAGGCGGCTATGGACACGGGGACTCGACTCAAACTGGTGCGTGAACGCAACAACCTCTCCCAACGGGAACTGGCCCGTCGCAGCGGGCTGACCAATTCGACGATCTCGCAGATCGAGCAGAATCGCGTCAG                                                                                                                                                         <  5:180783/148‑1                                                                                                   AGCGGGCTGACCAATTCGACGATCTCGCAGATCGAGCAGAATCGCGTCAGCCCGCTGCGACGGGCCAGTTCCCGTTGGGAGAGGTTGTTGCGTTCACGCACCAGTTTGAGTCGCGTCCCCGTGTCCATAGCCGCCTTGTAATCAGAGGT                                                      >  2:14135/1‑149                                                                                                     CGGGCTGACCAATTCGACGATCTCGCAGATCGAGCAGAATCGCGTCAGCCCGCTGCGACGGGCCAGTTCCCGTTGGGAGAGGTTGTTGCGTTCACGCACCAGTTTGAGTCGCGTCCCCGTGTCCATAGCCGCCTTGTAATCAGAGGTGT                                                    >  4:191167/1‑149                                                                                                       GGCTGACCAATTCGACGATCTCGCAGATCGAGCAGAATCGCGTCAGCCCGCTGCGACGGGCCAGTTCCCGTTGGGAGAGGTTGTTGCGTTCACGCACCAGTTTGAGTCGCGTCCCCGTGTCCATAGCCGCCTTGTAATCAGAGGTGTC                                                   >  2:200772/1‑148                                                                                                            ACCAATTCGACGATCTCGCAGATCGAGCAGAATCGCGTCAGCCCGCTGCGACGGGCCAGTTCCCGTTGGGAGAGGTTGTTGCGTTCACGCACCAGTTTGAGTCGCGTCCCCGTGTCCATAGCCGCCTTGTAATCAGAGGTGTCAATAA                                              <  3:191167/148‑1                                                                                                               AATTCGACGATCTCGCAGATCGAGCAGAATCGCGTCAGCCCGCTGCGACGGGCCAGTTCCCGTTGGGAGAGGTTGTTGCGTTCACGCACCAGTTTGAGTCGCGTCCCCGTGTCCATAGCCGCCTTGTAATCAGAGGTGTCAATAATAAT                                          <  1:200772/149‑1                                                                                                                                                GTCAGCCCGCTGCGACGGGCCAGTTCCCGTTGGGAGAGGTTGTTGCGTTCACGCACCAGTTTGAGTCGCGTCCCCGTGTCCATAGCCGCCTTGTAATCAGAGGTGTCAATAATAATGAGCGATGCGCATTAAAACACACTCTGCGCCCT         >  6:286475/1‑149                                                                                                                                                  CAGCCCGCTGCGACGGGCCAGTTCCCGTTGGGAGAGGTTGTTGCGTTCACGCACCAGTTTGAGTCGCGTCCCCGTGTCCATAGCCGCCTTGTAATCAGAGGTGTCAATAATAATTAGCGATGCGCATTAAAACACACTCTGCGCCC          >  1:279202/1‑146                                                                                                                                                  CAGCCCGCTGCGACGGGCCAGTTCCCGTTGGGAGAGGTTGTTGCGTTCACGCACCAGTTTGAGTCGCGTCCCCGTGTCCATAGCCGCCTTGTAATCAGAGGTGTCAATAATAATTAGCGATGCGCATTAAAACACACTCTGCGCCC          <  2:279202/146‑1                                                                                                                                                   AGCCCGCTGCGACGGGCCAGTTCCCGTTGGGAGAGGTTGTTGCGTTCACGCACCAGTTTGAGTCGCGTCCCCGTGTCCATAGCCGCCTTGTAATCAGAGGTGTCAATAATAATGAGCGATGCGCATTAAAACACACTCTGCGCCCTTGC      <  5:177930/149‑1                                                                                                                                                   AGCCCGCTGCGACGGGCCAGTTCCCGTTGGGAGAGGTTGTTGCGTTCACGCACCAGTTTGAGTCGCGTCCCCGTGTCCATAGCCGCCTTGTAATCAGAGGTGTCAATAATAATGAGCGATGCGCATTAAAACACACTCTGCGCCCTTGC      <  6:180783/149‑1                                                                                                                                                   AGCCCGCTGCGACGGGCCAGTTCCCGTTGGGAGAGGTTGTTGCGTTCACGCACCAGTTTGAGTCGCGTCCCCGTGTCCATAGCCGCCTTGTAATCAGAGGTGTCAATAATAATGAGCGATGCGCATTAAAACACACTCTGCGCCCTTGC      <  7:35620/149‑1                                                                                                                                                       CGCTGCGACGGGCCAGTTCCCGTTGGGAGAGGTTGTTGCGTTCACGCACCAGTTTGAGTCGCGTCCCCGTGTCCATAGCCGCCTTGTAATCAGAGGTGTCAATAATAATGAGCGATGCGCATTAAAACACACTCTGCGCCCTTGCGCGC  <  8:20198/149‑1                                                                                                                                                                                                                                                                                                             TTGACACCTCTGATTACAAGGCGGCTATGGACACGGGGACGCGACTCAAACTGGTGCGTGAACGCAACAACCTCTCCCAACGGGAACTGGCCCGTCGCAGCGGGCTGACCAATTCGACGATCTCGCAGATCGAGCAGAATCGCGTCAGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3282939‑3282789 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcagcccGCTGCGACGGGCCAGTTCCCGTTGGGAGAGGTTGTTGCGTTCACGCACCAGTTTGAGTCGCGTCCCCGTGTCCATAGCCGCCTTGTAATCAGAGGTGTCAATAATAATGAGCGATGCGCATTAAAACACACTCTGCGCCCTTGCGCGC  >  NC_002947/3282839‑3282986

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.