New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3677964	47 (0.950)	3 (0.060)	3/250	NT	5.4%	coding (967/1569 nt)	PP_3242	GGDEF domain‑containing protein
	?	NC_002947	= 3678010	60 (1.240)					coding (1013/1569 nt)	PP_3242	GGDEF domain‑containing protein

ATGGCTATCGCGCGTTGTCCAGCTACCCGTTGGTCGTGGAAGCGGGGCTGTCGCGTGAATCCATTGTCGCGCCCTGGCGGTACGATGCGATCAAGTCGGTGGCGGTCTTGCTGCTGTTGTTGGTGGGGCTGGCAGCGTTTGGCGGTGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3677815‑3677964 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggAGCAGCGCCCGCTCGATCACGATCCGCTCGCGCAGTTGGCGCAGCACCACACCGCCAAACGCTGCCAGCCCCACCAACAACAGCAGCAAGACCGCCACCGACTTGATCGCATCGTACCGCCAGGGCGCGACAATGGATTCACGCGA  <  NC_002947/3678010‑3677865                                                                                                                                                                                                                                                                                                          ATGGCTATCGCGCGTTGTCCAGCTACCCGTTGGTCGTGGAAGCGGGGCTGTCGCGTGAATCCATTGTCGCGCCCTGGCGGTACGATGCGATCAAGTCGGTGGCGGTCTTGCTGCTGTTGTTGGTGGGGCTGGCAGCGTTTGGCGGTGTG                                                                                                                                                     >  2:11032/1‑149  TGGCTATCGCGCGTTGTCAAGCTACACGTTGGTCGTGGAAGCGGGGCTGTCGCGTGAATCCATTGTCGCGCCCTGGCGGTACGATGCGATCAAGTCGGTGGCGGTCTTGCTGCTGATGTTGGTGGGGCTGGCTGAGTTTGGAGGTGTGG                                                                                                                                                    >  8:238421/1‑149                                                        TGAATCCATTGTCGCGCCCTGGCGGTACGATGCGATCAAGTCGGTGGCGGTCTTGCTGCTGTTGTTGGTGGGGCTGGCAGCGTTTGGCGGTGTGGAGCAGCGCCCGCTCGATCACGATCCGCTCGCGCAGTTGGCGCAGCACCACACCG                                                                                              <  1:42929/149‑1                                                            TCCATTGTCGCGCCCTGGCGGTACGATGCGATCAAGTCGGTGGCGGTCTTGCTGCTGTTGTTGGTGGGGCTGGCAGCGTTTGGCGGTGTGGAGCAGCGCCCGCTCGATCACGATCCGCTCGCGCAGTTGGCGCAGCACCACA                                                                                                 <  3:164114/142‑1                                                            TCCATTGTCGCGCCCTGGCGGTACGATGCGATCAAGTCGGTGGCGGTCTTGCTGCTGTTGTTGGTGGGGCTGGCAGCGTTTGGCGGTGTGGAGCAGCGCCCGCTCGATCACGATCCGCTCGCGCAGTTGGCGCAGCACCACA                                                                                                 >  4:164114/1‑142                                                                                                                                                    TGGAGCAGCGCCCGCTCGATCACGATCCGCTCGCGCAGTTGGCGCAGCACCACACCGCCAAACGCTGCCAGCCCCACCAACAACAGCAGCAAGACCGCCACCGACTTGATCGCATCGTACCGCCAGGGCGCGACAATGGATTCACGCGA  >  4:191874/1‑149                                                                                                                                                      GAGCAGCGCCCGCTCGATCACGATCCGCTCGCGCAGTTGGCGCAGCACCACACCGCCAAACGCTGCCAGCCCCACCAACAACAGCAGCAAGACCGCCACCGACTTGATCGCATCGTACCGCCAGGGCGCGACAATGGATTCACGCGA  <  7:163172/147‑1                                                                                                                                                                                                                                                                                                          ATGGCTATCGCGCGTTGTCCAGCTACCCGTTGGTCGTGGAAGCGGGGCTGTCGCGTGAATCCATTGTCGCGCCCTGGCGGTACGATGCGATCAAGTCGGTGGCGGTCTTGCTGCTGTTGTTGGTGGGGCTGGCAGCGTTTGGCGGTGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3677815‑3677964 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggAGCAGCGCCCGCTCGATCACGATCCGCTCGCGCAGTTGGCGCAGCACCACACCGCCAAACGCTGCCAGCCCCACCAACAACAGCAGCAAGACCGCCACCGACTTGATCGCATCGTACCGCCAGGGCGCGACAATGGATTCACGCGA  <  NC_002947/3678010‑3677865

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.