New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4491345 =	57 (1.150)	3 (0.060)	3/246	NT	5.2%	coding (519/2646 nt)	PP_3982	hypothetical protein
	?	NC_002947	4491381 =	55 (1.160)					coding (483/2646 nt)	PP_3982	hypothetical protein

CCCAGCTCCGGGGCTTGAATTTGGCTGGGCAGCCCACGGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4491385‑4491345 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggagCTGGGGAGCCACAAAACGTTCCTCATGAATATTGCGCAGGTACTGCCCAGCATCGATACGCTTCTGGGCACCTTCATCCACGGCCCCCAGCAATGCGTATTCCAGGGCTTCACACAGGCTGGTTTTTCCGCTGCCGTTAGGCCCATA  >  NC_002947/4491381‑4491527                                                                                                                                                                                              CCCAGCTCCGGGGCTTGAATTTGGCTGGGCAGCCCACGGAGCTGGGGAGCCACAAAACGTTCCTCATGAATATTGCGCAGGTACTGCCCAGCATCGATACGCTTCTGGGCACCTTCATCCACGGCCCCCAGCAATGCGTATTCCAGGG                                          >  5:853/1‑148 CCCAGCTCCGGGGCTTGAATTTGGCTGGGCAGCCCACGGAGCTGGGGAGCCACAAAACGTTCCTCATGAATATTGCGCAGGTACTGCCCAGCATCGATACGCTTCTGGGCACCTTCATCCACGGCCCCCAGCAATGCGTATTCCAGGG                                          <  6:853/148‑1   CAGCTCCGGGGCTTGAATTTGGCTGGGCAGCCCACGGAGCTGGGGAGCCACAAAACGTTCCTCATGAATATTGCGCAGGTACTGCCCAGCATCGATACGCTTCTGGGCACCTTCATCCACGGCCCCCAGCAATGCGTATTCCAGGGCTT                                       >  1:29456/1‑149                                        AGCTGGGGAGCCACAAAACGTTCCTCATGAATATTGCGCAGGTACTGCCCAGCATCGATACGCTTCTGGGCACCTTCATCCACGGCCCCCAGCAATGCGTATTCCAGGGCTTCACACAGGCTGGTTTTTCCGCTGCCGTTAGGCCCATA  <  6:58159/149‑1                                                                                                                                                                                              CCCAGCTCCGGGGCTTGAATTTGGCTGGGCAGCCCACGGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4491385‑4491345 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggagCTGGGGAGCCACAAAACGTTCCTCATGAATATTGCGCAGGTACTGCCCAGCATCGATACGCTTCTGGGCACCTTCATCCACGGCCCCCAGCAATGCGTATTCCAGGGCTTCACACAGGCTGGTTTTTCCGCTGCCGTTAGGCCCATA  >  NC_002947/4491381‑4491527

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.